Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 0.0e+00 1171.4 613 100.0
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 5.1e-308 1060.4 617 92.4
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 1.7e-138 497.3 578 53.3
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.4e-132 477.6 687 47.6
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 7.7e-131 471.9 619 49.9
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.5e-129 467.6 618 49.2
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 1.7e-125 454.1 615 48.8
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 5.5e-113 412.5 535 51.2
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 6.3e-109 399.1 611 44.7
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 2.4e-108 397.1 653 43.5
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 9.2e-108 395.2 627 43.9
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 3.7e-101 373.2 606 42.7
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 7.0e-100 369.0 605 43.0
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.6e-99 367.9 609 43.0
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.1e-97 361.7 602 43.4
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 6.8e-95 352.4 445 50.3
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 3.4e-94 350.1 587 42.6
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 1.2e-91 341.7 607 42.8
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 2.0e-86 324.3 613 40.3
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 6.4e-85 319.3 635 38.1
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 3.2e-84 317.0 548 40.7
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 7.1e-84 315.8 298 60.1
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 3.0e-82 310.5 301 59.5
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 3.9e-82 310.1 363 53.2
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 2.8e-80 303.9 539 42.5
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 3.4e-78 297.0 401 46.1
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 9.9e-78 295.4 291 57.0
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 1.1e-76 292.0 635 38.0
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.4e-76 291.6 620 39.2
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 2.4e-76 290.8 635 36.1
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 9.2e-76 288.9 540 39.4
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.6e-75 288.1 620 36.5
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.6e-75 288.1 534 38.8
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 2.1e-75 287.7 632 35.6
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 6.0e-75 286.2 538 38.5
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 3.0e-74 283.9 610 37.7
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.4e-71 275.0 319 53.6
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 4.0e-71 273.5 330 53.0
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 8.9e-71 272.3 382 46.6
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 3.4e-70 270.4 238 60.5
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 9.9e-70 268.9 652 34.5
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 2.2e-69 267.7 257 56.0
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.9e-69 267.3 309 53.1
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.9e-68 264.6 256 54.7
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 7.1e-68 262.7 307 53.1
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 2.7e-67 260.8 334 48.2
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 3.5e-67 260.4 517 40.6
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 6.0e-67 259.6 334 48.2
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 3.9e-66 256.9 565 36.8
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.1e-65 255.4 659 34.1
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.1e-65 255.4 334 47.6
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 3.3e-65 253.8 324 48.8
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 9.6e-65 252.3 320 48.8
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 2.8e-64 250.8 312 49.7
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 1.8e-63 248.1 609 34.5
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.5e-62 245.0 657 33.3
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 2.0e-62 244.6 271 53.5
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 5.8e-62 243.0 327 47.4
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 5.8e-62 243.0 284 51.1
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 6.4e-61 239.6 613 35.9
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 7.9e-59 232.6 356 41.9
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 3.0e-58 230.7 198 61.6
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 2.5e-57 227.6 515 36.3
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.3e-56 225.3 616 32.8
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 4.8e-56 223.4 335 43.6
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 8.1e-56 222.6 538 35.3
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 5.3e-55 219.9 280 49.3
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 6.9e-55 219.5 494 35.6
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.6e-54 217.6 282 47.9
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 9.9e-54 215.7 520 37.5
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.3e-53 215.3 519 37.0
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 1.1e-52 212.2 227 53.7
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.9e-52 211.5 310 45.2
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.2e-52 210.3 321 44.9
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.7e-51 207.6 322 43.8
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 6.0e-51 206.5 322 43.5
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 8.7e-50 202.6 321 43.3
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 8.7e-50 202.6 283 46.3
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.5e-49 201.1 304 45.1
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 4.3e-49 200.3 192 59.4
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.6e-48 198.4 607 32.9
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.8e-48 196.8 321 43.0
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 8.1e-48 196.1 318 42.5
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 8.1e-48 196.1 314 42.7
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.8e-47 194.9 175 60.0
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 2.6e-46 191.0 312 41.0
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 5.8e-46 189.9 329 39.8
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 5.8e-46 189.9 205 53.7
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 7.6e-46 189.5 289 44.3
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 7.6e-46 189.5 289 44.3
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 7.6e-46 189.5 289 44.3
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 1.0e-45 189.1 290 44.8
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 1.3e-45 188.7 305 40.7
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 1.3e-45 188.7 290 44.8
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.3e-45 188.7 290 44.8
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 3.2e-44 184.1 334 40.1
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 1.2e-43 182.2 624 30.9
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 5.1e-42 176.8 483 32.1
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.5e-41 175.3 177 56.5
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 3.7e-40 170.6 625 29.9
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 8.2e-40 169.5 216 50.0
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 2.4e-39 167.9 284 41.5
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 2.0e-38 164.9 298 38.3
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.4e-38 164.1 497 33.6
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.8e-32 144.4 435 32.6
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 3.7e-32 144.1 185 43.8
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.4e-31 142.1 242 41.7
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.0e-30 138.3 222 44.6
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.6e-30 137.9 147 55.1
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 4.5e-30 137.1 174 46.6
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 5.9e-30 136.7 156 48.7
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 7.7e-30 136.3 172 48.8
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 6.5e-29 133.3 220 43.2
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 3.3e-25 120.9 627 26.3
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 2.2e-24 118.2 192 41.7
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 2.4e-23 114.8 204 35.8
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 6.5e-21 106.7 126 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 3.2e-20 104.4 238 36.1
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 5.5e-20 103.6 399 30.8
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 9.4e-20 102.8 116 50.0
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 5.2e-18 97.1 115 48.7
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 1.5e-17 95.5 108 50.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 9.7e-17 92.8 186 35.5
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 6.3e-16 90.1 115 47.0
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 1.1e-15 89.4 317 30.6
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 1.0e-13 82.8 59 64.4
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 2.2e-13 81.6 80 55.0
Actinidia21472 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.8e-13 80.9 149 38.9
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 6.5e-13 80.1 188 33.0
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 8.0e-11 73.2 183 33.3
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 3.0e-10 71.2 205 29.8
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 4.0e-10 70.9 172 30.2
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 5.2e-10 70.5 68 54.4
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 5.2e-10 70.5 193 31.6
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 4.4e-09 67.4 76 51.3
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 5.7e-09 67.0 171 32.7
SEGI_20616 Sequoiadendron giganteum HOM05D042574 ORTHO05D384790 5.7e-09 67.0 69 47.8
SEGI_40313 Sequoiadendron giganteum HOM05D042574 ORTHO05D384823 5.7e-09 67.0 69 47.8
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 7.5e-09 66.6 43 72.1
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 2.2e-08 65.1 187 29.9
Lsat_1_v5_gn_1_105560 Lactuca sativa HOM05D003178 ORTHO05D003636 2.8e-08 64.7 59 52.5
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.8e-08 63.9 161 29.8
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.8e-08 63.9 161 29.8
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 4.8e-08 63.9 161 29.8
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 6.3e-08 63.5 136 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 8.2e-08 63.2 182 29.7
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 8.2e-08 63.2 189 28.6
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 1.2e-06 59.3 124 34.7
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.2e-06 59.3 218 27.1
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.2e-06 59.3 112 33.9
Actinidia39162 Actinidia chinensis HOM05D000686 ORTHO05D000512 2.0e-06 58.5 88 42.0
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.0e-06 58.5 196 27.6
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.7e-06 58.2 226 25.7
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 2.7e-06 58.2 129 32.6
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 2.7e-06 58.2 197 25.4
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 2.7e-06 58.2 112 33.9
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 3.5e-06 57.8 128 32.8
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 4.5e-06 57.4 181 27.6
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 4.5e-06 57.4 129 31.0
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 4.5e-06 57.4 195 26.2
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 4.5e-06 57.4 110 32.7


User provided reference genes

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