Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.2e-146 523.1 252 100.0
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.9e-88 329.7 253 64.0
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.2e-85 320.5 251 62.5
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.8e-84 315.5 247 59.5
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.9e-84 315.1 250 60.8
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 6.5e-84 314.7 248 61.3
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 1.9e-83 313.2 251 62.2
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.6e-82 310.1 251 60.2
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 2.7e-82 309.3 250 59.6
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 3.5e-82 308.9 247 60.7
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 6.0e-82 308.1 162 89.5
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 5.7e-80 301.6 252 59.9
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 7.4e-80 301.2 251 59.0
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.8e-78 296.6 253 56.9
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.9e-78 294.7 229 62.4
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.5e-77 292.0 252 55.6
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 6.5e-76 288.1 243 60.5
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 3.6e-74 282.3 250 57.6
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 7.9e-74 281.2 255 56.1
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.4e-73 280.4 247 54.7
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 2.3e-73 279.6 257 57.2
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 3.9e-73 278.9 251 56.6
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 3.9e-73 278.9 253 54.9
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 4.3e-72 275.4 255 56.1
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 5.7e-72 275.0 253 54.2
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 5.7e-72 275.0 249 57.8
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 7.4e-72 274.6 253 54.2
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.3e-71 273.9 246 53.7
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.2e-71 273.1 252 54.0
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.8e-71 272.7 251 55.0
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.8e-71 272.7 257 54.9
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 6.3e-71 271.6 248 54.4
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 4.1e-70 268.9 251 54.2
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.1e-70 268.9 247 56.7
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.1e-70 268.9 253 54.5
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.9e-70 268.1 249 54.6
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 9.1e-70 267.7 249 54.2
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 9.1e-70 267.7 250 54.8
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.2e-69 267.3 251 53.8
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.2e-69 267.3 240 56.2
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-69 266.9 256 53.9
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 1.5e-69 266.9 250 53.6
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.0e-69 266.5 241 55.6
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 2.0e-69 266.5 249 54.2
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.6e-69 266.2 253 53.0
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.4e-69 265.8 254 53.5
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 4.5e-69 265.4 255 56.1
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.5e-69 265.4 253 53.0
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 5.9e-69 265.0 257 53.3
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 1.3e-68 263.8 253 54.5
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.7e-68 263.5 243 55.1
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 2.2e-68 263.1 255 53.7
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 6.5e-68 261.5 241 55.2
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.5e-68 261.2 250 52.4
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.4e-67 260.4 249 51.8
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.5e-67 259.6 245 53.9
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.5e-67 259.6 256 51.2
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 5.5e-67 258.5 250 54.4
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 7.2e-67 258.1 252 53.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.6e-66 255.8 248 51.6
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 3.6e-66 255.8 247 51.8
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 4.7e-66 255.4 248 52.4
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 7.9e-66 254.6 236 54.2
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 7.9e-66 254.6 227 55.9
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 1.4e-65 253.8 253 53.0
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.8e-65 253.4 225 54.2
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 3.0e-65 252.7 222 51.8
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.0e-65 252.7 252 50.8
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 3.9e-65 252.3 232 54.3
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 6.7e-65 251.5 255 52.5
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 8.8e-65 251.1 251 50.2
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 8.8e-65 251.1 248 52.8
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 2.0e-64 250.0 270 50.4
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 5.7e-64 248.4 272 51.1
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 5.7e-64 248.4 254 50.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 7.4e-64 248.1 259 52.5
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 7.4e-64 248.1 239 53.1
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 7.4e-64 248.1 237 54.0
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 2.8e-63 246.1 272 50.7
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 2.8e-63 246.1 256 50.0
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.1e-62 244.2 299 45.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.4e-62 243.0 233 54.1
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 3.1e-62 242.7 254 50.0
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.1e-62 242.7 240 49.6
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 5.3e-62 241.9 254 49.6
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 7.0e-62 241.5 251 47.0
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 5.9e-61 238.4 186 60.8
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.2e-60 236.5 242 51.2
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.8e-60 235.7 243 48.6
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 8.5e-60 234.6 255 49.0
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 1.4e-59 233.8 222 50.9
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.9e-59 233.4 257 45.9
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.9e-59 233.4 213 54.0
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 2.5e-59 233.0 249 48.2
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 5.5e-59 231.9 225 50.7
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 7.2e-59 231.5 232 48.3
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.1e-58 229.9 256 48.0
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 2.7e-58 229.6 250 47.2
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 4.7e-58 228.8 209 53.1
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 1.0e-57 227.6 248 46.8
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.4e-57 227.3 249 47.8
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.8e-57 226.9 216 55.6
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 2.3e-57 226.5 199 53.3
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 3.9e-57 225.7 198 57.6
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 5.2e-57 225.3 232 50.9
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 6.7e-57 224.9 247 47.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 2.6e-56 223.0 248 47.6
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 2.6e-56 223.0 261 47.5
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 2.6e-56 223.0 196 55.1
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.3e-56 222.6 247 48.2
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 3.3e-56 222.6 247 48.2
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 3.3e-56 222.6 247 48.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 6.3e-55 218.4 236 51.3
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.3e-55 218.4 195 54.9
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 6.3e-55 218.4 236 47.9
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 8.2e-55 218.0 271 43.9
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 3.1e-54 216.1 174 60.9
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.3e-54 215.3 236 50.8
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 5.3e-54 215.3 214 51.9
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 7.0e-54 214.9 257 44.0
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.0e-53 213.4 249 45.4
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.0e-53 213.4 249 45.4
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 2.0e-53 213.4 249 44.6
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 3.5e-53 212.6 270 41.5
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.1e-51 207.6 249 44.6
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.1e-51 207.6 249 44.6
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.5e-51 207.2 256 42.2
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.5e-51 207.2 254 44.1
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.9e-51 206.8 235 47.7
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.9e-51 206.8 201 48.8
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 8.0e-50 201.4 256 42.6
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 8.0e-50 201.4 185 55.1
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 3.0e-49 199.5 161 59.0
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.4e-48 196.1 261 41.4
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.7e-47 193.7 255 45.1
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.8e-47 192.2 194 49.5
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.1e-46 191.0 216 45.8
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.4e-46 189.9 252 41.3
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.6e-45 187.2 284 38.7
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.0e-45 186.8 245 42.0
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 3.5e-45 186.0 195 47.7
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 6.5e-44 181.8 208 46.6
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.1e-43 181.0 200 44.0
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.5e-43 180.6 243 39.9
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.5e-43 179.9 247 40.1
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 3.6e-42 176.0 161 52.8
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 8.0e-42 174.9 156 54.5
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 5.2e-41 172.2 166 51.2
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 6.8e-41 171.8 159 51.6
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 3.4e-40 169.5 218 44.5
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.1e-38 162.9 247 39.7
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 5.9e-37 158.7 199 44.7
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.3e-36 157.5 228 40.8
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 9.5e-35 151.4 210 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 2.8e-34 149.8 287 30.7
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.6e-34 149.4 125 60.0
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 3.0e-33 146.4 224 37.9
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.4e-32 142.5 166 47.0
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 7.5e-32 141.7 230 37.4
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.7e-29 133.3 131 51.9
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 3.5e-29 132.9 148 41.9
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 1.7e-28 130.6 301 27.9
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 4.3e-27 125.9 145 44.8
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 6.1e-26 122.1 133 50.4
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.1e-25 119.8 189 40.7
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.0e-25 119.4 227 32.2
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 7.8e-21 105.1 68 67.6
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.3e-19 99.4 248 31.5
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-18 97.8 247 30.4
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.6e-18 97.4 87 56.3
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 2.1e-18 97.1 247 29.6
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.8e-18 96.7 72 61.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.0e-16 90.5 117 48.7
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 5.8e-16 89.0 72 56.9
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-16 88.6 171 32.2
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 7.5e-16 88.6 140 37.9
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 9.8e-16 88.2 131 41.2
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.4e-14 84.3 78 55.1
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 1.6e-13 80.9 96 42.7
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 3.5e-13 79.7 104 42.3
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.3e-09 67.0 61 54.1
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 3.1e-09 66.6 52 61.5
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 8.9e-09 65.1 43 65.1
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 8.3e-07 58.5 33 72.7


User provided reference genes

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