Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 9.6e-239 829.7 404 100.0
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.2e-109 399.4 402 54.7
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.7e-63 246.9 399 41.6
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 5.0e-62 242.7 401 42.1
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.9e-61 240.7 399 41.4
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 2.5e-61 240.4 399 41.1
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 5.5e-61 239.2 399 41.1
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 7.2e-61 238.8 399 41.1
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 2.1e-60 237.3 399 41.9
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 6.8e-59 232.3 394 39.8
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.2e-58 231.5 394 39.1
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 1.2e-58 231.5 400 40.5
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.0e-58 230.7 416 38.7
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 3.7e-57 226.5 362 41.2
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 8.3e-57 225.3 395 38.5
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.8e-56 224.2 412 38.1
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 5.4e-56 222.6 401 40.9
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 9.1e-56 221.9 150 74.0
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.6e-55 221.1 400 38.2
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 7.7e-55 218.8 424 36.1
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 1.0e-54 218.4 394 38.1
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 1.5e-53 214.5 396 37.9
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 9.5e-53 211.8 272 49.3
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.4e-51 208.0 347 40.9
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 8.9e-51 205.3 414 36.5
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.3e-49 201.4 398 39.4
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 6.3e-49 199.1 309 43.4
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 4.5e-47 193.0 496 32.3
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 5.9e-47 192.6 348 38.5
TAR623G0101 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.5e-45 188.0 142 67.6
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 4.3e-45 186.4 344 38.7
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 8.9e-43 178.7 295 42.7
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 1.2e-42 178.3 398 34.4
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.4e-40 171.4 369 35.2
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.2e-39 168.3 396 33.6
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 1.6e-36 157.9 333 34.8
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 1.8e-35 154.5 399 30.8
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 1.5e-34 151.4 401 31.9
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 2.6e-34 150.6 344 31.1
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 3.2e-32 143.7 344 30.5
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 3.2e-32 143.7 344 30.5
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 2.7e-31 140.6 414 28.5
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 3.5e-31 140.2 402 30.1
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 6.0e-31 139.4 236 38.6
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.7e-30 137.9 375 28.5
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 2.3e-30 137.5 407 30.0
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 3.0e-30 137.1 404 29.2
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 8.6e-30 135.6 229 41.5
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 1.1e-29 135.2 349 31.2
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 3.3e-29 133.7 357 30.5
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 3.3e-29 133.7 229 41.0
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 3.3e-29 133.7 229 41.0
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 2.1e-28 131.0 326 32.2
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 2.8e-28 130.6 298 34.6
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 2.8e-28 130.6 378 33.1
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 4.7e-28 129.8 320 32.5
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 8.1e-28 129.0 377 29.2
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 1.1e-27 128.6 343 29.4
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 1.8e-27 127.9 370 32.2
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 1.8e-27 127.9 221 39.8
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 2.3e-27 127.5 361 31.6
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 5.2e-27 126.3 204 39.7
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 5.2e-27 126.3 349 28.4
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.2e-26 125.2 145 48.3
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.5e-26 124.8 378 28.6
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 1.3e-25 121.7 376 27.1
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 1.7e-25 121.3 360 30.6
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 3.7e-25 120.2 413 27.6
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 4.9e-25 119.8 361 30.5
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 6.4e-25 119.4 359 29.8
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 6.4e-25 119.4 346 30.3
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 6.4e-25 119.4 362 27.6
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 1.1e-24 118.6 352 28.4
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 1.4e-24 118.2 350 30.3
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.2e-23 115.2 380 29.5
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 1.2e-23 115.2 374 29.4
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 7.8e-23 112.5 328 30.8
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.3e-22 111.7 366 29.0
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 8.6e-22 109.0 382 27.5
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 8.6e-22 109.0 356 30.1
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 1.5e-21 108.2 271 29.5
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.5e-21 108.2 346 31.5
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.9e-21 107.8 376 27.4
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 1.9e-21 107.8 163 41.1
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 1.9e-21 107.8 163 41.1
TAR623G0335 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.9e-21 107.8 85 64.7
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 7.3e-21 105.9 347 29.4
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 6.2e-20 102.8 244 30.7
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.4e-19 101.7 355 28.7
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 3.1e-19 100.5 231 32.0
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 7.6e-18 95.9 298 30.2
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 6.4e-17 92.8 350 29.4
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 1.4e-16 91.7 245 29.8
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 1.4e-16 91.7 283 27.2
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 2.4e-16 90.9 113 39.8
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 5.4e-16 89.7 365 27.9
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.7e-15 87.4 348 31.3
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 7.8e-15 85.9 95 50.5
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 5.1e-14 83.2 352 27.0
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 1.5e-13 81.6 372 29.6
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.9e-13 81.3 372 29.6
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 4.3e-13 80.1 346 29.8
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 4.3e-13 80.1 237 29.5
ATR0307G108 Amborella trichopoda HOM05D007266 ORTHO05D005982 5.6e-13 79.7 346 26.3
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 9.6e-13 79.0 348 29.6
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 1.2e-12 78.6 348 29.6
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-12 78.2 374 29.7
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 2.1e-12 77.8 220 34.1
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 2.8e-12 77.4 220 34.1
Aqoxy2G00436 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 6.2e-12 76.3 99 39.4
SHI11361 Sapria himalayana HOM05D000436 ORTHO05D000678 8.1e-12 75.9 181 29.8
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 3.1e-11 73.9 349 28.1
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 4.0e-11 73.6 377 28.9
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 6.9e-11 72.8 114 43.0
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 6.9e-11 72.8 102 45.1
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 1.5e-10 71.6 242 30.2
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 1.5e-10 71.6 242 30.2
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 3.4e-10 70.5 226 27.9
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 5.8e-10 69.7 108 40.7
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 7.6e-10 69.3 108 40.7
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 7.6e-10 69.3 108 40.7
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 7.6e-10 69.3 348 28.4
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.3e-09 68.6 108 39.8
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 2.2e-09 67.8 108 39.8
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.2e-09 67.8 142 36.6
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 2.9e-09 67.4 109 38.5
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 3.8e-09 67.0 108 38.9
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 4.9e-09 66.6 100 43.0
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 8.4e-09 65.9 96 39.6
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 8.4e-09 65.9 96 39.6
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 8.4e-09 65.9 96 39.6
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 8.4e-09 65.9 228 29.4
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.1e-08 65.5 228 28.9
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.9e-08 64.7 222 30.6
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.9e-08 64.7 111 38.7
Peaxi162Scf00220g00314 Petunia axillaris HOM05D007266 ORTHO05D005982 2.4e-08 64.3 217 24.0
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 3.2e-08 63.9 104 36.5
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 5.4e-08 63.2 318 27.0
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 7.1e-08 62.8 116 32.8
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-07 62.0 88 44.3
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-07 62.0 95 41.1
SEGI_41395 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 2.1e-07 61.2 179 29.6
Ciclev10004446m.g Citrus clementina HOM05D004414 ORTHO05D001824 2.7e-07 60.8 119 33.6
C03p03440 Brassica napus HOM05D008873 ORTHO05D005982 3.5e-07 60.5 98 42.9
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 7.8e-07 59.3 123 29.3
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.0e-06 58.9 105 37.1
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.0e-06 58.9 150 27.3
SEGI_03595 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 1.7e-06 58.2 132 29.5
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 2.3e-06 57.8 104 32.7
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 2.3e-06 57.8 129 32.6
Zm00001eb018850 Zea mays HOM05D003662 ORTHO05D001824 2.3e-06 57.8 89 38.2
Mapoly0169s0020 Marchantia polymorpha HOM05D003662 ORTHO05D001824 3.0e-06 57.4 91 38.5
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 3.9e-06 57.0 116 31.9
Glyma.08G073300 Glycine max HOM05D003662 ORTHO05D001824 3.9e-06 57.0 94 37.2
SEGI_13704 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 3.9e-06 57.0 128 29.7
Zm00001eb332560 Zea mays HOM05D064550 ORTHO05D037019 3.9e-06 57.0 81 42.0
CARHR278080 Cardamine hirsuta HOM05D003662 ORTHO05D001824 6.6e-06 56.2 177 28.2
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 6.6e-06 56.2 115 30.4
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 8.7e-06 55.8 129 32.6
Gohir.D04G154500 Gossypium hirsutum HOM05D003662 ORTHO05D001824 8.7e-06 55.8 114 31.6
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 8.7e-06 55.8 220 27.3
Zm00001eb392400 Zea mays HOM05D003662 ORTHO05D001824 8.7e-06 55.8 88 35.2


User provided reference genes

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