Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.2e-109 399.8 198 100.0
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.7e-92 342.8 196 84.7
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.2e-90 336.7 195 82.6
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 7.1e-86 320.9 196 78.1
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.6e-85 319.7 197 79.7
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 3.0e-84 315.5 198 77.3
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 3.3e-83 312.0 198 76.3
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 2.1e-82 309.3 198 75.3
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 3.1e-81 305.4 198 74.7
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 3.1e-81 305.4 194 73.7
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.6e-80 302.4 200 72.0
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 4.4e-80 301.6 199 71.9
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 9.9e-80 300.4 201 73.6
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-79 300.1 200 70.5
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 2.2e-79 299.3 199 71.4
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.9e-79 298.9 198 71.2
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 4.9e-79 298.1 201 73.1
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 4.9e-79 298.1 200 73.0
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 6.4e-79 297.7 200 70.0
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.1e-78 297.0 200 70.5
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.9e-78 296.2 201 72.6
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.2e-78 295.4 200 73.0
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.4e-78 294.7 200 71.0
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 3.5e-77 292.0 194 69.1
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 3.5e-77 292.0 200 69.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 6.6e-76 287.7 200 68.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.6e-76 287.7 194 71.6
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 3.3e-75 285.4 198 69.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 9.6e-75 283.9 194 67.0
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 1.3e-74 283.5 195 68.7
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.1e-74 282.7 198 69.2
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.1e-74 282.7 198 69.2
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 8.1e-74 280.8 198 69.2
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 8.1e-74 280.8 189 68.3
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 4.0e-73 278.5 200 67.0
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 5.3e-73 278.1 198 66.7
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 5.3e-73 278.1 198 68.2
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 6.9e-73 277.7 198 67.2
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.2e-72 276.9 201 65.2
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.2e-72 276.9 201 65.2
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.7e-71 273.1 197 64.0
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.7e-71 273.1 202 64.4
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.2e-71 272.7 202 66.8
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 6.4e-71 271.2 202 63.4
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.4e-70 270.0 197 64.5
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.4e-70 269.2 225 63.1
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 3.2e-70 268.9 199 64.8
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 5.5e-70 268.1 199 64.8
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 5.5e-70 268.1 199 64.3
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 7.1e-70 267.7 199 65.3
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 9.3e-70 267.3 197 62.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 9.3e-70 267.3 197 63.5
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.2e-69 266.9 201 63.2
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 4.6e-69 265.0 202 64.9
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 7.9e-69 264.2 231 60.2
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.0e-68 263.8 191 63.4
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.3e-68 262.7 198 62.6
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 3.0e-68 262.3 169 74.0
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.0e-68 262.3 191 62.8
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.9e-68 261.9 198 62.6
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 5.1e-68 261.5 195 64.1
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 5.1e-68 261.5 196 67.3
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.1e-68 261.5 191 62.8
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 5.1e-68 261.5 200 64.0
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.1e-67 260.4 193 64.2
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 1.9e-67 259.6 202 60.9
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.5e-67 259.2 193 65.8
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.5e-67 259.2 198 61.6
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 9.6e-67 257.3 183 69.4
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 4.8e-66 255.0 202 59.9
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 4.8e-66 255.0 192 62.5
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 8.1e-66 254.2 228 57.9
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.1e-65 253.8 202 59.9
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.8e-65 253.1 199 63.8
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 2.4e-65 252.7 172 70.3
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.4e-65 252.7 199 59.3
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.1e-65 252.3 190 62.6
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 3.1e-65 252.3 201 60.7
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 3.1e-65 252.3 225 56.4
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 4.0e-65 251.9 199 59.3
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 5.3e-65 251.5 246 55.3
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 6.9e-65 251.1 202 59.4
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.5e-64 250.0 202 57.9
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 1.5e-64 250.0 202 58.9
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 2.0e-64 249.6 199 59.3
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 2.0e-64 249.6 199 59.3
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 5.8e-64 248.1 224 57.1
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 5.8e-64 248.1 225 57.3
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 7.6e-64 247.7 200 58.5
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 7.6e-64 247.7 200 58.5
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 2.2e-63 246.1 199 60.3
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 2.9e-63 245.7 198 62.6
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 8.4e-63 244.2 202 56.4
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 5.5e-62 241.5 193 59.6
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 9.3e-62 240.7 205 61.0
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.2e-61 240.4 190 61.1
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.0e-60 237.3 267 48.3
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 2.3e-60 236.1 200 55.0
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.9e-60 235.3 193 57.0
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.5e-59 233.4 231 51.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.5e-59 232.6 193 57.0
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 2.5e-59 232.6 229 53.3
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 9.6e-59 230.7 231 51.9
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.6e-58 229.9 228 52.2
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 6.3e-58 228.0 228 50.9
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.2e-56 223.8 151 72.8
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.0e-56 223.0 198 62.6
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.4e-56 222.2 195 50.8
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 3.4e-56 222.2 222 50.5
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-55 219.9 148 68.2
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 2.9e-55 219.2 189 52.4
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 5.0e-55 218.4 194 52.6
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 2.5e-54 216.1 193 52.3
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 9.3e-54 214.2 190 58.4
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.7e-53 212.6 146 71.2
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 3.5e-53 212.2 194 54.6
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 7.9e-53 211.1 199 51.8
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 7.9e-53 211.1 199 51.8
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.0e-52 210.7 144 67.4
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.3e-52 209.5 194 51.0
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 3.9e-52 208.8 250 44.8
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 6.7e-52 208.0 143 72.0
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.7e-51 204.9 216 50.9
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.8e-50 202.6 136 68.4
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.4e-49 200.3 116 84.5
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.3e-47 193.7 191 55.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 4.2e-46 188.7 157 59.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 9.4e-46 187.6 196 51.0
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.7e-44 181.4 119 71.4
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 8.8e-44 181.0 195 43.6
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.1e-43 180.6 204 45.1
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 5.7e-43 178.3 174 56.9
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.8e-42 176.0 190 49.5
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.8e-41 173.3 197 46.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.1e-41 172.2 149 55.0
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.2e-40 170.6 189 48.7
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 5.9e-40 168.3 154 51.9
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.4e-36 157.1 118 64.4
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.7e-36 154.8 115 67.8
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 3.3e-35 152.5 113 66.4
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.7e-34 149.1 114 58.8
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 3.7e-34 149.1 152 53.3
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 4.1e-33 145.6 110 63.6
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.0e-31 141.0 195 32.3
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 5.2e-28 128.6 111 55.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 8.8e-28 127.9 82 78.0
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.8e-26 122.9 86 60.5
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.0e-23 114.4 197 39.1
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 8.5e-23 111.3 127 49.6
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.1e-22 110.9 59 91.5
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 8.0e-21 104.8 202 29.7
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.8e-17 93.6 204 27.5
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.0e-17 91.7 57 78.9
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 2.7e-13 79.7 66 56.1
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.6e-08 63.9 49 59.2
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 1.5e-06 57.4 49 55.1
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 2.5e-06 56.6 112 30.4


User provided reference genes

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