Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 9.0e-120 433.7 238 100.0
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 3.1e-64 249.2 210 69.5
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 8.3e-49 198.0 237 54.4
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 9.2e-48 194.5 237 54.4
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 9.2e-48 194.5 246 52.8
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 1.9e-45 186.8 235 49.8
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 7.3e-45 184.9 235 51.1
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 3.1e-43 179.5 240 50.0
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 6.8e-43 178.3 241 52.7
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 6.8e-43 178.3 240 49.6
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 6.8e-43 178.3 237 46.8
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 4.4e-42 175.6 240 48.8
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 5.8e-42 175.3 238 48.7
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 1.7e-41 173.7 245 45.7
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 4.9e-41 172.2 243 48.1
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 6.4e-41 171.8 235 48.5
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 1.1e-40 171.0 188 58.5
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 2.4e-40 169.9 235 48.1
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 4.1e-40 169.1 251 47.8
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 9.2e-40 167.9 239 47.7
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 1.6e-39 167.2 240 51.2
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 1.6e-39 167.2 181 57.5
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 3.5e-39 166.0 236 47.9
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 7.8e-39 164.9 233 48.1
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 1.3e-38 164.1 237 45.1
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 1.7e-38 163.7 220 50.0
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 5.1e-38 162.2 239 46.0
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 6.6e-38 161.8 242 47.5
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 1.1e-37 161.0 223 43.9
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 3.3e-37 159.5 222 45.5
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 4.7e-36 155.6 233 45.5
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 1.8e-35 153.7 152 60.5
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 3.1e-35 152.9 245 42.4
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 4.0e-35 152.5 233 43.3
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 6.8e-35 151.8 224 44.6
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 6.8e-35 151.8 231 45.5
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 1.2e-34 151.0 215 46.0
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.0e-34 150.2 185 48.6
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 7.6e-34 148.3 226 46.0
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 2.9e-33 146.4 185 50.3
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 2.9e-33 146.4 217 44.7
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 4.9e-33 145.6 216 43.1
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 1.4e-32 144.1 178 53.4
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.4e-32 143.3 230 44.3
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 2.4e-32 143.3 231 44.6
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 5.4e-32 142.1 206 46.6
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 9.2e-32 141.4 210 44.8
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 1.6e-31 140.6 211 43.6
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 2.7e-31 139.8 251 41.4
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 1.0e-30 137.9 241 42.7
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.7e-30 137.1 210 44.8
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 2.3e-30 136.7 243 41.2
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 2.3e-30 136.7 210 44.8
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 3.0e-30 136.3 243 40.7
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 3.9e-30 136.0 235 41.7
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 3.9e-30 136.0 236 41.5
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 5.1e-30 135.6 234 39.7
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 8.7e-30 134.8 209 45.5
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.1e-29 134.4 239 41.4
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.5e-29 134.0 234 43.2
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 2.5e-29 133.3 233 42.5
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.3e-29 132.9 210 43.3
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.6e-28 130.6 178 48.9
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 2.8e-28 129.8 246 42.3
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 2.8e-28 129.8 246 42.3
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 2.8e-28 129.8 246 42.3
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 8.1e-28 128.3 243 39.1
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 8.1e-28 128.3 250 38.8
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 1.1e-27 127.9 243 37.9
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 1.4e-27 127.5 249 40.2
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 2.4e-27 126.7 247 40.1
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 2.4e-27 126.7 225 42.7
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 3.1e-27 126.3 188 43.6
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 4.0e-27 125.9 246 40.7
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 1.5e-26 124.0 211 40.8
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 2.0e-26 123.6 223 39.9
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 2.0e-26 123.6 218 41.7
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 2.6e-26 123.2 248 40.7
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 2.6e-26 123.2 244 39.3
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 1.3e-25 120.9 241 38.2
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 2.2e-25 120.2 209 41.6
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 3.8e-25 119.4 184 41.8
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 4.9e-25 119.0 214 40.2
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 8.4e-25 118.2 187 43.3
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 1.2e-23 114.4 256 36.7
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.6e-23 114.0 234 38.5
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 3.5e-23 112.8 186 44.1
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 3.5e-23 112.8 250 36.8
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 1.3e-22 110.9 264 36.0
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 1.7e-22 110.5 207 42.5
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 6.6e-22 108.6 227 37.9
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 8.7e-22 108.2 226 39.4
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 1.9e-21 107.1 151 43.0
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 4.3e-21 105.9 127 52.0
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 2.8e-20 103.2 113 57.5
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 1.4e-19 100.9 213 38.5
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 5.3e-19 99.0 233 36.1
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 5.3e-19 99.0 153 40.5
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 6.9e-19 98.6 141 48.2
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 2.0e-18 97.1 119 51.3
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 7.6e-18 95.1 238 31.5
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 9.3e-16 88.2 158 41.1
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 1.2e-15 87.8 187 36.4
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.1e-15 87.0 217 35.5
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.3e-14 84.3 217 34.6
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 6.9e-11 72.0 226 30.1
Zm00001eb370010 Zea mays HOM05D007216 ORTHO05D049898 2.9e-09 66.6 246 29.3
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 1.9e-08 63.9 139 37.4
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 2.5e-08 63.5 136 38.2
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 2.5e-08 63.5 140 36.4
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 2.5e-08 63.5 114 37.7
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 3.2e-08 63.2 104 39.4
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 7.1e-08 62.0 104 37.5
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 7.1e-08 62.0 167 34.1
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 7.1e-08 62.0 153 33.3
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 7.1e-08 62.0 124 36.3
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 9.3e-08 61.6 130 33.8
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 9.3e-08 61.6 105 41.0
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 1.2e-07 61.2 106 37.7
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 1.2e-07 61.2 134 34.3
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 1.6e-07 60.8 66 53.0
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 1.6e-07 60.8 133 33.8
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.6e-07 60.8 210 30.0
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 2.1e-07 60.5 61 52.5
TAR375G0391 Trochodendron aralioides HOM05D007216 ORTHO05D415735 2.7e-07 60.1 41 80.5
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 3.5e-07 59.7 81 49.4
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 3.5e-07 59.7 81 49.4
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 3.5e-07 59.7 81 49.4
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 3.5e-07 59.7 126 35.7
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 4.6e-07 59.3 70 52.9
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 4.6e-07 59.3 150 34.7
unitig_749.g14229 Utricularia gibba HOM05D004059 ORTHO05D004591 4.6e-07 59.3 99 38.4
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 6.0e-07 58.9 81 48.1
arahy.Tifrunner.gnm1.ann1.H4FASW Arachis hypogaea HOM05D004059 ORTHO05D004591 7.9e-07 58.5 145 36.6
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 7.9e-07 58.5 63 50.8
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 7.9e-07 58.5 216 27.3
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 1.0e-06 58.2 136 35.3
CDE06G2535 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 1.0e-06 58.2 141 29.8
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.3e-06 57.8 128 32.8
Manes.16G101000 Manihot esculenta HOM05D004059 ORTHO05D004591 1.3e-06 57.8 131 35.1
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.3e-06 57.8 234 27.8
SGA_v2.0_scaffold62G21623 Striga asiatica HOM05D004059 ORTHO05D004591 1.3e-06 57.8 96 37.5
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 1.8e-06 57.4 98 37.8
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.8e-06 57.4 99 37.4
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.8e-06 57.4 99 37.4
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.8e-06 57.4 99 37.4
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.8e-06 57.4 99 37.4
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 1.8e-06 57.4 110 36.4
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 1.8e-06 57.4 95 40.0
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 1.8e-06 57.4 134 33.6
TAR636G3314 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.8e-06 57.4 157 31.2
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 2.3e-06 57.0 70 52.9
Ciclev10007937m.g Citrus clementina HOM05D004059 ORTHO05D004591 2.3e-06 57.0 145 34.5
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 2.3e-06 57.0 126 31.7
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 2.3e-06 57.0 177 31.1
Dinv42329 Davidia involucrata HOM05D004059 ORTHO05D004591 3.0e-06 56.6 79 44.3
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 3.0e-06 56.6 103 39.8
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 3.0e-06 56.6 103 35.9
Eucgr.C03476 Eucalyptus grandis HOM05D004059 ORTHO05D004591 3.9e-06 56.2 106 36.8
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 3.9e-06 56.2 142 35.2
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 5.1e-06 55.8 227 26.4
Medtr2g039620 Medicago truncatula HOM05D004059 ORTHO05D004591 5.1e-06 55.8 140 35.7
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 5.1e-06 55.8 74 40.5
SEGI_33369 Sequoiadendron giganteum HOM05D010622 ORTHO05D011909 5.1e-06 55.8 132 33.3
DCAR_031333 Daucus carota HOM05D004059 ORTHO05D004591 6.7e-06 55.5 136 31.6
Manes.03G034700 Manihot esculenta HOM05D004059 ORTHO05D004591 6.7e-06 55.5 122 32.8
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 6.7e-06 55.5 136 33.1
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 8.7e-06 55.1 229 27.9
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 8.7e-06 55.1 130 34.6
Sabra06G0117700 Salix brachista HOM05D004059 ORTHO05D004591 8.7e-06 55.1 139 31.7


User provided reference genes

Program Settings