Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0759 Trochodendron aralioides HOM05D002943 ORTHO05D002685 2.1e-59 233.4 284 100.0
Dinv34766 Davidia involucrata HOM05D002943 ORTHO05D002685 3.7e-43 179.5 282 86.5
ClCG09G007120 Citrullus lanatus HOM05D002943 ORTHO05D002685 6.5e-40 168.7 284 74.3
CiPaw.07G090800 Carya illinoinensis HOM05D002943 ORTHO05D002685 1.1e-39 167.9 274 82.1
MBI04_g36449_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 5.5e-39 165.6 280 79.6
Cfa006157 Carpinus fangiana HOM05D002943 ORTHO05D002685 2.7e-38 163.3 286 71.0
Haze_04694 Corylus avellana HOM05D002943 ORTHO05D002685 2.7e-38 163.3 286 70.3
Medtr1g072140 Medicago truncatula HOM05D002943 ORTHO05D002685 2.3e-37 160.2 282 78.4
CsaV3_7G028040 Cucumis sativus L. HOM05D002943 ORTHO05D002685 5.1e-37 159.1 284 72.9
VMungo0720G0375 Vigna mungo HOM05D002943 ORTHO05D002685 2.5e-36 156.8 283 58.7
Glyma.02G146800 Glycine max HOM05D002943 ORTHO05D002685 5.7e-36 155.6 280 78.2
SGA_v2.0_scaffold1G00490 Striga asiatica HOM05D002943 ORTHO05D002685 1.6e-35 154.1 282 83.7
QL12p021366 Quercus lobata HOM05D002943 ORTHO05D002685 2.1e-35 153.7 286 69.2
Sed0026548 Sechium edule HOM05D002943 ORTHO05D002685 3.7e-35 152.9 284 71.5
Phvul.007G172600 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 6.3e-35 152.1 281 77.9
MSTRG.18239 Avicennia marina HOM05D002943 ORTHO05D002685 8.2e-35 151.8 282 86.5
Ca_09752_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 1.8e-34 150.6 265 81.5
Lsat_1_v5_gn_9_3501 Lactuca sativa HOM05D002943 ORTHO05D002685 9.0e-34 148.3 275 86.9
Prupe.8G239500 Prunus persica HOM05D002943 ORTHO05D002685 9.0e-34 148.3 284 71.5
CANSAT56G2303 Cannabis sativa HOM05D002943 ORTHO05D002685 1.2e-33 147.9 284 70.1
Lj5g0020766 Lotus japonicus HOM05D002943 ORTHO05D002685 1.2e-33 147.9 276 77.5
Psat6g060720 Pisum sativum HOM05D002943 ORTHO05D002685 1.5e-33 147.5 265 80.8
MELO3C015824.2 Cucumis melo HOM05D002943 ORTHO05D002685 3.4e-33 146.4 291 69.8
MD03G1263200 Malus domestica HOM05D002943 ORTHO05D002685 5.9e-33 145.6 284 70.4
RcHm_v2.0_Chr6g0290821 Rosa chinensis HOM05D002943 ORTHO05D002685 7.6e-33 145.2 284 71.5
Eucgr.K03366 Eucalyptus grandis HOM05D002943 ORTHO05D002685 1.3e-32 144.4 284 70.8
SGA_v2.0_scaffold138G35332 Striga asiatica HOM05D002943 ORTHO05D002685 2.9e-32 143.3 276 84.8
ECA247G3845 Erigeron canadensis HOM05D002943 ORTHO05D002685 3.8e-32 142.9 269 81.4
Glyma.10G027100 Glycine max HOM05D002943 ORTHO05D002685 2.5e-31 140.2 282 78.4
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 4.2e-31 139.4 282 82.3
PGR044G0058 Punica granatum HOM05D002943 ORTHO05D002685 5.5e-31 139.0 277 71.8
Nn4g26296 Nelumbo nucifera HOM05D002943 ORTHO05D002685 3.6e-30 136.3 252 85.3
Aqoxy2G03372 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 1.3e-29 134.4 279 86.0
TWI59G0374 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 3.9e-29 132.9 284 77.5
AL6G50270 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 6.7e-29 132.1 285 62.5
Carub.0006s3437 Capsella rubella HOM05D002943 ORTHO05D002685 6.7e-29 132.1 285 62.8
SalBow4G2517 Salvia bowleyana HOM05D002943 ORTHO05D002685 8.7e-29 131.7 276 75.0
Lj2A1170T16 Lonicera japonica HOM05D002943 ORTHO05D002685 1.1e-28 131.3 282 75.2
CARHR251070 Cardamine hirsuta HOM05D002943 ORTHO05D002685 1.5e-28 131.0 282 67.0
AT4G02730 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 1.9e-28 130.6 272 64.0
Sp6g02690 Schrenkiella parvula HOM05D002943 ORTHO05D002685 1.9e-28 130.6 282 61.0
Thhalv10028762m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 3.3e-28 129.8 285 58.6
BcaB05g23663 Brassica carinata HOM05D002943 ORTHO05D002685 5.7e-28 129.0 282 62.4
SHI25865 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-26 124.8 277 70.0
arahy.Tifrunner.gnm1.ann1.NISQ8K Arachis hypogaea HOM05D002943 ORTHO05D002685 3.4e-25 119.8 334 35.3
Cc03_g10690 Coffea canephora HOM05D002943 ORTHO05D002685 3.8e-24 116.3 95 58.9
GSVIVG01001162001 Vitis vinifera HOM05D002943 ORTHO05D002685 4.2e-23 112.8 97 56.7
EL10Ac5g10558 Beta vulgaris HOM05D002943 ORTHO05D002685 3.6e-22 109.8 277 70.8
CDE05G3340 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 6.1e-22 109.0 283 78.4
DCAR_012486 Daucus carota HOM05D002943 ORTHO05D002685 1.8e-21 107.5 92 81.5
COL.COLO4_09075 Corchorus olitorius HOM05D002943 ORTHO05D002685 2.3e-21 107.1 253 71.5
Ah.11g050560 Amaranthus hybridus HOM05D002943 ORTHO05D002685 6.7e-21 105.5 283 69.3
Solyc09g065290.4 Solanum lycopersicum HOM05D002943 ORTHO05D002685 6.7e-21 105.5 251 87.6
Sopen09g027040 Solanum pennellii HOM05D002943 ORTHO05D002685 6.7e-21 105.5 251 87.6
Peaxi162Scf00939g00121 Petunia axillaris HOM05D002943 ORTHO05D002685 8.8e-21 105.1 273 72.2
Thecc.01G277000 Theobroma cacao HOM05D002943 ORTHO05D002685 8.8e-21 105.1 253 71.1
HanXRQChr10g0282271 Helianthus annuus HOM05D002943 ORTHO05D002685 1.1e-20 104.8 279 79.6
Duzib138G1878 Durio zibethinus HOM05D002943 ORTHO05D002685 1.5e-20 104.4 253 71.1
Actinidia09125 Actinidia chinensis HOM05D002943 ORTHO05D002685 2.6e-20 103.6 249 89.2
PGSC0003DMG400019361 Solanum tuberosum HOM05D002943 ORTHO05D002685 3.3e-20 103.2 251 87.6
Gohir.A08G045160 Gossypium hirsutum HOM05D002943 ORTHO05D002685 9.7e-20 101.7 253 71.1
Gohir.D08G055200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 9.7e-20 101.7 253 71.1
Gorai.004G055700 Gossypium raimondii HOM05D002943 ORTHO05D002685 9.7e-20 101.7 253 71.1
Peaxi162Scf00641g00318 Petunia axillaris HOM05D002943 ORTHO05D002685 1.3e-19 101.3 249 79.1
vmacro02583 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 1.7e-19 100.9 51 86.3
ATR0332G039 Amborella trichopoda HOM05D002943 ORTHO05D002685 3.7e-19 99.8 49 89.8
CSS0015908 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 6.3e-19 99.0 250 88.8
Ciclev10021263m.g Citrus clementina HOM05D002943 ORTHO05D002685 1.8e-18 97.4 242 81.4
BcaC03g16173 Brassica carinata HOM05D002943 ORTHO05D002685 2.4e-18 97.1 51 80.4
A02p24970 Brassica napus HOM05D002943 ORTHO05D002685 2.4e-18 97.1 51 80.4
C02p39070 Brassica napus HOM05D002943 ORTHO05D002685 2.4e-18 97.1 51 80.4
BolC2t09917H Brassica oleracea HOM05D002943 ORTHO05D002685 2.4e-18 97.1 51 80.4
BraA02t07487Z Brassica rapa HOM05D002943 ORTHO05D002685 2.4e-18 97.1 51 80.4
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 3.1e-18 96.7 103 48.5
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 3.1e-18 96.7 91 51.6
Nitab4.5_0004318g0010 Nicotiana tabacum HOM05D002943 ORTHO05D002685 3.1e-18 96.7 245 78.8
Atru.chr5.1459 Acer truncatum HOM05D002943 ORTHO05D002685 6.9e-18 95.5 240 73.3
PSO761G0421 Papaver somniferum HOM05D002943 ORTHO05D002685 6.9e-18 95.5 254 78.7
PSO210G2619 Papaver somniferum HOM05D002943 ORTHO05D002685 1.2e-17 94.7 254 78.3
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 2.0e-17 94.0 295 64.7
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 2.0e-17 94.0 85 51.8
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 2.6e-17 93.6 85 51.8
Nitab4.5_0005971g0020 Nicotiana tabacum HOM05D002943 ORTHO05D002685 3.4e-17 93.2 249 70.3
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 4.5e-17 92.8 51 78.4
Hma1.2p1_0667F.1_g199660 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 7.7e-17 92.0 249 75.9
AL6G50240 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.0e-16 91.7 51 76.5
Lsat_1_v5_gn_4_28161 Lactuca sativa HOM05D002943 ORTHO05D002685 1.0e-16 91.7 95 48.4
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.7e-16 90.9 51 74.5
Cpa.g.sc52.53 Carica papaya HOM05D002943 ORTHO05D002685 2.2e-16 90.5 251 70.5
Lalb_Chr21g0306431 Lupinus albus HOM05D002943 ORTHO05D002685 2.2e-16 90.5 240 72.9
vmacro02582 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 2.9e-16 90.1 55 81.8
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 3.8e-16 89.7 51 72.5
Lj2C426T10 Lonicera japonica HOM05D002943 ORTHO05D002685 5.0e-16 89.4 51 72.5
Manes.01G207000 Manihot esculenta HOM05D002943 ORTHO05D002685 5.0e-16 89.4 250 80.4
arahy.Tifrunner.gnm1.ann1.FR17PC Arachis hypogaea HOM05D002943 ORTHO05D002685 8.5e-16 88.6 62 72.6
Rhsim13G0026000 Rhododendron simsii HOM05D002943 ORTHO05D002685 8.5e-16 88.6 67 70.1
Zm00001eb276600 Zea mays HOM05D002943 ORTHO05D002685 8.5e-16 88.6 51 72.5
Sc17g0001450 Simmondsia chinensis HOM05D002943 ORTHO05D002685 1.4e-15 87.8 240 89.6
Potri.002G051900 Populus trichocarpa HOM05D002943 ORTHO05D002685 2.5e-15 87.0 66 66.7
Oeu054736.1 Olea europaea HOM05D002943 ORTHO05D002685 4.2e-15 86.3 51 72.5
Nn1g05606 Nelumbo nucifera HOM05D002943 ORTHO05D002685 1.6e-14 84.3 51 72.5
Migut.D00309 Erythranthe guttata HOM05D002943 ORTHO05D002685 2.7e-14 83.6 244 86.5
FvH4_2g23370 Fragaria vesca HOM05D002943 ORTHO05D002685 6.1e-14 82.4 64 67.2
Hund02771 Selenicereus undatus HOM05D002943 ORTHO05D002685 6.1e-14 82.4 280 76.8
HPP92_017535 Vanilla planifolia HOM05D002943 ORTHO05D002685 7.9e-14 82.0 245 66.9
AagrBONN_evm.TU.Sc2ySwM_253.2 Anthoceros agrestis HOM05D009278 ORTHO05D002685 1.8e-13 80.9 93 67.7
AagrBONN_evm.TU.Sc2ySwM_368.2446 Anthoceros agrestis HOM05D009278 ORTHO05D002685 1.8e-13 80.9 93 67.7
SEGI_40787 Sequoiadendron giganteum HOM05D002943 ORTHO05D002685 1.8e-13 80.9 46 73.9
AagrBONN_evm.TU.Sc2ySwM_295.9 Anthoceros agrestis HOM05D009278 ORTHO05D002685 1.1e-12 78.2 93 44.1
THA.LOC104815938 Tarenaya hassleriana HOM05D002943 ORTHO05D002685 1.5e-12 77.8 241 68.0
AagrBONN_evm.TU.Sc2ySwM_261.2 Anthoceros agrestis HOM05D009278 ORTHO05D002685 7.4e-12 75.5 93 65.6
AagrBONN_evm.TU.Sc2ySwM_292.2 Anthoceros agrestis HOM05D002943 ORTHO05D002685 9.7e-12 75.1 52 63.5
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 3.7e-11 73.2 53 64.2
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 4.8e-11 72.8 87 43.7
Haze_27348 Corylus avellana HOM05D002943 ORTHO05D002685 8.2e-11 72.0 50 62.0
C03p06110 Brassica napus HOM05D002943 ORTHO05D002685 1.0e-08 65.1 64 45.3
Eucgr.H02400 Eucalyptus grandis HOM05D002943 ORTHO05D002685 1.0e-08 65.1 54 61.1
TPR.G9116 Trifolium pratense HOM05D002943 ORTHO05D002685 1.7e-08 64.3 66 53.0
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 2.2e-08 63.9 71 43.7
Dinv36997 Davidia involucrata HOM05D002943 ORTHO05D002685 2.9e-08 63.5 53 58.5
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 6.5e-08 62.4 48 60.4
BcaB01g02009 Brassica carinata HOM05D002943 ORTHO05D002685 8.5e-08 62.0 37 73.0
Dinv26988 Davidia involucrata HOM05D002943 ORTHO05D002685 8.5e-08 62.0 57 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1648 Anthoceros agrestis HOM05D002943 ORTHO05D002685 1.1e-07 61.6 90 36.7
PGR031G0631 Punica granatum HOM05D002943 ORTHO05D002685 1.1e-07 61.6 61 54.1
CSS0049699 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 1.5e-07 61.2 45 64.4
SMO119G0268 Selaginella moellendorffii HOM05D002943 ORTHO05D002685 1.5e-07 61.2 46 65.2
Duzib187G0476 Durio zibethinus HOM05D002943 ORTHO05D002685 1.9e-07 60.8 54 59.3
TAR628G0306 Trochodendron aralioides HOM05D002943 ORTHO05D002685 1.9e-07 60.8 41 63.4
GSVIVG01003702001 Vitis vinifera HOM05D002943 ORTHO05D002685 1.9e-07 60.8 47 66.0
ECA238G4010 Erigeron canadensis HOM05D002943 ORTHO05D002685 4.2e-07 59.7 66 47.0
Lsat_1_v5_gn_2_81981 Lactuca sativa HOM05D002943 ORTHO05D002685 4.2e-07 59.7 52 53.8
Hund07388 Selenicereus undatus HOM05D002943 ORTHO05D002685 4.2e-07 59.7 43 67.4
ClCG01G018070 Citrullus lanatus HOM05D002943 ORTHO05D002685 5.5e-07 59.3 56 57.1
DCAR_010766 Daucus carota HOM05D000670 ORTHO05D002685 7.2e-07 58.9 59 50.8
arahy.Tifrunner.gnm1.ann1.DT5KC6 Arachis hypogaea HOM05D002943 ORTHO05D002685 9.4e-07 58.5 67 47.8
arahy.Tifrunner.gnm1.ann1.MJC5Q8 Arachis hypogaea HOM05D002943 ORTHO05D002685 9.4e-07 58.5 67 47.8
arahy.Tifrunner.gnm1.ann1.RFJS66 Arachis hypogaea HOM05D002943 ORTHO05D002685 9.4e-07 58.5 67 47.8
Duzib147G1423 Durio zibethinus HOM05D002943 ORTHO05D002685 9.4e-07 58.5 59 52.5
CiPaw.07G041100 Carya illinoinensis HOM05D002943 ORTHO05D002685 1.2e-06 58.2 42 66.7
FvH4_1g18760 Fragaria vesca HOM05D002943 ORTHO05D002685 1.2e-06 58.2 45 60.0
FAN19G1191 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.2e-06 58.2 45 60.0
FAN23G1457 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.2e-06 58.2 45 60.0
FAN28G1172 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.2e-06 58.2 45 60.0
RcHm_v2.0_Chr2g0109631 Rosa chinensis HOM05D002943 ORTHO05D002685 1.2e-06 58.2 42 64.3
Sc09g0001310 Simmondsia chinensis HOM05D002943 ORTHO05D002685 1.2e-06 58.2 52 53.8
ATR0332G110 Amborella trichopoda HOM05D002943 ORTHO05D002685 1.6e-06 57.8 46 58.7
TWI74G1409 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 1.6e-06 57.8 46 58.7
TAR376G1143 Trochodendron aralioides HOM05D002943 ORTHO05D002685 1.6e-06 57.8 41 63.4
Ciclev10026097m.g Citrus clementina HOM05D002943 ORTHO05D002685 2.1e-06 57.4 47 57.4
Haze_03949 Corylus avellana HOM05D002943 ORTHO05D002685 2.1e-06 57.4 57 54.4
Lj2C426T11 Lonicera japonica HOM05D002943 ORTHO05D002685 2.1e-06 57.4 49 55.1
Thecc.01G081600 Theobroma cacao HOM05D002943 ORTHO05D002685 2.1e-06 57.4 56 53.6
DCAR_005275 Daucus carota HOM05D002943 ORTHO05D002685 2.7e-06 57.0 59 50.8
Manes.12G119800 Manihot esculenta HOM05D002943 ORTHO05D002685 3.6e-06 56.6 46 58.7
Medtr4g119620 Medicago truncatula HOM05D002943 ORTHO05D002685 3.6e-06 56.6 66 48.5
HPP92_012269 Vanilla planifolia HOM05D002943 ORTHO05D002685 3.6e-06 56.6 40 70.0
Ca_14440_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 4.7e-06 56.2 66 48.5
DCAR_017974 Daucus carota HOM05D002943 ORTHO05D002685 4.7e-06 56.2 56 51.8
Oeu025000.1 Olea europaea HOM05D002943 ORTHO05D002685 4.7e-06 56.2 46 58.7
Psat0s2006g0120 Pisum sativum HOM05D002943 ORTHO05D002685 4.7e-06 56.2 66 47.0
Rhsim10G0085400 Rhododendron simsii HOM05D002943 ORTHO05D002685 4.7e-06 56.2 48 56.2
Actinidia11939 Actinidia chinensis HOM05D002943 ORTHO05D002685 6.1e-06 55.8 44 56.8
Cc07_g07680 Coffea canephora HOM05D002943 ORTHO05D002685 6.1e-06 55.8 46 54.3
MD01G1047000 Malus domestica HOM05D002943 ORTHO05D002685 6.1e-06 55.8 49 53.1
Nn1g05949 Nelumbo nucifera HOM05D002943 ORTHO05D002685 6.1e-06 55.8 40 62.5
Sed0027180 Sechium edule HOM05D002943 ORTHO05D002685 6.1e-06 55.8 54 55.6
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 6.1e-06 55.8 61 50.8
CANSAT01G2837 Cannabis sativa HOM05D002943 ORTHO05D002685 8.0e-06 55.5 43 60.5
COL.COLO4_11661 Corchorus olitorius HOM05D002943 ORTHO05D002685 8.0e-06 55.5 54 51.9
HanXRQChr14g0447041 Helianthus annuus HOM05D002943 ORTHO05D002685 8.0e-06 55.5 42 59.5
PSO541G4758 Papaver somniferum HOM05D002943 ORTHO05D002685 8.0e-06 55.5 42 57.1
PSO675G4958 Papaver somniferum HOM05D002943 ORTHO05D002685 8.0e-06 55.5 42 57.1
Prupe.6G211800 Prunus persica HOM05D002943 ORTHO05D002685 8.0e-06 55.5 49 55.1


User provided reference genes

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