Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.1e-235 817.4 415 100.0
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 4.2e-189 664.8 411 81.8
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 2.1e-180 636.0 410 75.4
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.4e-179 633.3 411 77.1
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.3e-178 628.6 410 76.8
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.3e-177 626.7 411 75.2
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.4e-176 623.2 411 78.1
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 3.1e-176 622.1 410 74.4
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 5.3e-176 621.3 410 74.1
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 412 73.3
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.5e-175 618.2 412 72.8
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 4.5e-175 618.2 410 72.9
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 7.7e-175 617.5 410 72.9
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 7.7e-175 617.5 410 73.4
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.3e-174 616.7 410 73.4
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.1e-173 613.6 410 72.9
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.4e-173 613.2 409 75.3
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 2.1e-172 609.4 410 73.4
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 4.7e-172 608.2 410 72.0
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.7e-172 608.2 409 74.6
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.1e-172 607.8 410 71.7
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 7.9e-172 607.4 411 72.5
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.0e-171 607.1 411 72.3
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.4e-171 606.7 414 73.4
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.8e-171 606.3 410 73.7
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.3e-171 605.9 411 73.7
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 3.0e-171 605.5 411 74.2
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.0e-171 605.5 410 71.7
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.9e-171 605.1 410 71.5
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 3.9e-171 605.1 410 72.2
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.5e-170 603.2 413 73.1
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.6e-170 602.4 410 71.2
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 2.6e-170 602.4 410 71.0
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.6e-170 602.4 410 72.9
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 5.7e-170 601.3 410 72.9
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.7e-169 599.7 411 71.8
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.8e-169 599.0 411 73.0
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 3.7e-169 598.6 409 72.1
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 6.3e-169 597.8 410 72.7
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 2.4e-168 595.9 412 72.3
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 3.1e-168 595.5 407 71.5
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 4.1e-168 595.1 412 72.1
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 4.1e-168 595.1 410 71.7
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 4.1e-168 595.1 410 71.2
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 7.0e-168 594.3 410 71.0
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.2e-167 593.6 409 72.4
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.6e-167 593.2 413 72.6
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.0e-167 592.8 412 72.3
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 2.6e-167 592.4 411 71.3
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.9e-166 589.0 411 71.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 3.8e-166 588.6 375 77.3
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 5.0e-166 588.2 411 71.0
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.9e-165 586.3 411 70.8
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 3.2e-165 585.5 411 71.5
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 4.2e-165 585.1 410 70.5
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 9.4e-165 583.9 414 70.8
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 9.4e-165 583.9 413 72.4
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.2e-164 583.6 414 70.8
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 8.0e-164 580.9 411 71.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 1.4e-163 580.1 443 67.0
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.8e-163 579.7 414 68.6
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.8e-163 579.7 409 70.4
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 2.3e-163 579.3 415 69.4
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 5.2e-163 578.2 407 69.8
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 5.2e-163 578.2 412 69.9
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.1e-162 577.0 413 71.4
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.6e-162 575.9 478 63.0
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 5.7e-162 574.7 410 69.3
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 5.7e-162 574.7 413 70.0
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 9.7e-162 573.9 412 70.4
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.2e-161 572.8 410 69.8
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 2.2e-161 572.8 411 69.1
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.8e-161 572.4 413 70.2
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 6.3e-161 571.2 410 68.8
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 6.3e-161 571.2 410 69.3
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 6.3e-161 571.2 407 68.8
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 3.1e-160 568.9 408 69.6
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 4.1e-160 568.5 416 68.5
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 5.3e-160 568.2 410 68.5
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 9.1e-160 567.4 456 64.7
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.0e-159 566.2 410 67.8
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 2.7e-159 565.8 410 68.5
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 5.9e-159 564.7 410 67.8
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 7.7e-159 564.3 410 67.8
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 7.7e-159 564.3 410 67.8
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.2e-158 562.8 409 68.5
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 2.9e-158 562.4 417 68.1
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 3.8e-158 562.0 410 67.8
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 6.5e-158 561.2 506 60.7
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 8.5e-158 560.8 410 67.6
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.1e-157 560.5 410 67.6
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.5e-157 560.1 409 68.0
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.5e-157 560.1 409 68.2
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.5e-157 559.3 409 67.5
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.2e-157 558.9 410 68.0
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 5.5e-157 558.1 410 67.3
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 7.2e-157 557.8 411 67.9
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 7.2e-157 557.8 410 67.1
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 1.6e-156 556.6 410 67.1
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.6e-156 556.6 412 66.7
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.7e-156 555.8 411 67.6
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 6.1e-156 554.7 410 66.8
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 8.0e-156 554.3 417 66.7
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.2e-154 550.4 411 67.2
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.6e-154 549.3 410 67.6
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.6e-154 549.3 410 66.3
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 2.6e-154 549.3 410 67.6
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 3.4e-154 548.9 410 67.3
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.4e-154 548.9 410 68.0
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-153 547.0 410 67.6
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 1.2e-151 540.4 466 60.5
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 2.2e-150 536.2 403 68.0
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 2.1e-148 529.6 418 65.6
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 4.9e-145 518.5 415 62.2
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 2.7e-143 512.7 432 60.2
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 3.8e-142 508.8 413 62.0
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 1.4e-136 490.3 408 58.8
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.0e-134 482.6 347 69.7
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 2.8e-132 476.1 304 75.7
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 6.4e-129 464.9 409 55.5
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 9.5e-125 451.1 332 67.2
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.7e-124 448.7 348 66.7
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 8.1e-124 448.0 408 56.4
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 2.3e-123 446.4 329 68.1
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.6e-116 422.5 334 64.1
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 9.2e-112 407.9 418 52.4
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 3.5e-111 406.0 420 53.1
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 2.1e-108 396.7 418 51.0
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 5.4e-96 355.5 241 71.8
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.2e-95 354.4 234 73.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 8.7e-78 295.0 430 41.2
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 9.3e-72 275.0 391 42.7
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 4.3e-69 266.2 178 73.0
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.5e-58 231.1 235 53.6
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 7.2e-56 222.2 325 40.3
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.2e-48 196.4 181 58.6
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 8.2e-44 182.2 113 77.9
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 2.2e-41 174.1 253 45.1
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 5.9e-34 149.4 219 42.0
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.0e-30 138.7 125 53.6
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 4.4e-29 133.3 86 72.1
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.7e-28 131.3 80 76.2
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 6.6e-25 119.4 84 63.1
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.2e-21 108.6 89 61.8
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.2e-21 108.6 89 61.8
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.3e-20 105.1 87 60.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 6.4e-20 102.8 89 60.7
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.2e-19 100.5 83 61.4
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 2.0e-18 97.8 74 60.8
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 2.0e-18 97.8 74 60.8
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 3.0e-17 94.0 73 61.6
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 3.9e-17 93.6 74 58.1
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.9e-17 93.6 80 55.0
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 8.6e-17 92.4 184 40.2
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.8e-14 84.7 64 60.9
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 4.4e-13 80.1 63 57.1
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 5.4e-11 73.2 59 59.3
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 3.9e-09 67.0 88 43.2
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 5.6e-08 63.2 112 38.4
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 7.3e-08 62.8 112 37.5


User provided reference genes

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