Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 5.9e-80 300.8 155 100.0
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 4.2e-25 118.6 134 51.5
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.5e-17 92.8 74 71.6
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.5e-16 89.0 61 73.8
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 4.6e-16 88.6 72 66.7
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 6.1e-16 88.2 69 68.1
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.3e-15 86.3 55 74.5
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 8.7e-15 84.3 67 68.7
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 4.3e-14 82.0 61 68.9
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.3e-14 82.0 68 64.7
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 5.7e-14 81.6 57 71.9
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 9.7e-14 80.9 55 69.1
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 9.7e-14 80.9 70 61.4
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 1.3e-13 80.5 71 59.2
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 1.3e-13 80.5 62 61.3
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 2.2e-13 79.7 68 61.8
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 2.2e-13 79.7 68 58.8
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.2e-13 79.7 62 66.1
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 3.7e-13 79.0 72 59.7
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 3.7e-13 79.0 62 66.1
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 3.7e-13 79.0 65 63.1
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 8.2e-13 77.8 70 61.4
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 8.2e-13 77.8 62 67.7
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 8.2e-13 77.8 63 69.8
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.1e-12 77.4 72 55.6
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.1e-12 77.4 49 75.5
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.8e-12 76.6 67 61.2
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.8e-12 76.6 48 77.1
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 2.4e-12 76.3 49 73.5
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.4e-12 76.3 49 73.5
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.4e-12 76.3 49 73.5
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 2.4e-12 76.3 62 66.1
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 4.1e-12 75.5 69 59.4
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 5.3e-12 75.1 49 71.4
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 9.0e-12 74.3 61 62.3
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.2e-11 73.9 53 64.2
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 2.0e-11 73.2 66 63.6
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 2.0e-11 73.2 79 51.9
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.0e-11 73.2 58 69.0
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 2.6e-11 72.8 57 64.9
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 3.4e-11 72.4 79 51.9
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 3.4e-11 72.4 65 56.9
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 3.4e-11 72.4 54 64.8
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 5.9e-11 71.6 69 55.1
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 5.9e-11 71.6 48 72.9
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 5.9e-11 71.6 51 66.7
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 7.7e-11 71.2 53 64.2
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 7.7e-11 71.2 68 57.4
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.0e-10 70.9 65 64.6
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 1.3e-10 70.5 69 59.4
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.3e-10 70.5 67 59.7
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.7e-10 70.1 66 54.5
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.7e-10 70.1 54 63.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.7e-10 70.1 54 63.0
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.7e-10 70.1 54 63.0
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.7e-10 70.1 54 63.0
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 2.2e-10 69.7 66 53.0
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 2.2e-10 69.7 55 61.8
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 3.8e-10 68.9 61 55.7
CiPaw.01G161200 Carya illinoinensis HOM05D008368 ORTHO05D010489 5.0e-10 68.6 53 58.5
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 5.0e-10 68.6 59 57.6
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 5.0e-10 68.6 60 56.7
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 5.0e-10 68.6 43 76.7
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 6.5e-10 68.2 54 61.1
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 6.5e-10 68.2 54 61.1
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 6.5e-10 68.2 44 72.7
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.5e-10 68.2 66 56.1
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 8.5e-10 67.8 52 63.5
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 8.5e-10 67.8 74 50.0
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 8.5e-10 67.8 53 62.3
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.9e-09 66.6 50 60.0
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.9e-09 66.6 71 54.9
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.5e-09 66.2 50 62.0
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 2.5e-09 66.2 65 53.8
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.2e-09 65.5 67 55.2
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 9.4e-09 64.3 50 64.0
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 1.2e-08 63.9 56 60.7
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 1.6e-08 63.5 37 78.4
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 2.1e-08 63.2 50 60.0
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.1e-08 63.2 68 58.8
Prupe.1G152900 Prunus persica HOM05D008368 ORTHO05D010489 3.6e-08 62.4 47 57.4
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 3.6e-08 62.4 65 50.8
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 7.9e-08 61.2 60 60.0
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 7.9e-08 61.2 52 63.5
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.0e-07 60.8 48 58.3
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 1.0e-07 60.8 71 45.1
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.4e-07 60.5 67 55.2
FAN22G0200 Fragaria x ananassa HOM05D008368 ORTHO05D010489 2.3e-07 59.7 46 58.7
Os02g0715400 Oryza sativa ssp. japonica HOM05D027844 ORTHO05D037205 3.0e-07 59.3 64 50.0
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 3.9e-07 58.9 43 62.8
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 6.7e-07 58.2 55 56.4
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 8.8e-07 57.8 67 43.3
FvH4_4g14770 Fragaria vesca HOM05D008368 ORTHO05D010489 1.5e-06 57.0 46 54.3
FAN07G1534 Fragaria x ananassa HOM05D008368 ORTHO05D010489 1.5e-06 57.0 46 54.3
FAN17G1872 Fragaria x ananassa HOM05D008368 ORTHO05D010489 1.5e-06 57.0 46 54.3
SEGI_00564 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 2.0e-06 56.6 64 43.8
Cc03_g03240 Coffea canephora HOM05D008368 ORTHO05D010489 2.5e-06 56.2 39 64.1
Actinidia08510 Actinidia chinensis HOM05D008368 ORTHO05D010489 3.3e-06 55.8 64 45.3
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 3.3e-06 55.8 60 51.7
unitig_0.g1010 Utricularia gibba HOM05D007833 ORTHO05D009855 3.3e-06 55.8 47 57.4
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 4.3e-06 55.5 68 44.1
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 5.7e-06 55.1 66 43.9
MD13G1185300 Malus domestica HOM05D008368 ORTHO05D010489 5.7e-06 55.1 40 57.5
CSS0036726 Camellia sinensis var. sinensis HOM05D008368 ORTHO05D010489 7.4e-06 54.7 74 41.9
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 7.4e-06 54.7 57 43.9
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 7.4e-06 54.7 68 44.1
HanXRQChr10g0282781 Helianthus annuus HOM05D007833 ORTHO05D009855 9.7e-06 54.3 39 71.8


User provided reference genes

Program Settings