Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.3e-286 987.6 491 100.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.1e-212 743.4 495 75.8
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.1e-196 690.3 438 78.3
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 9.3e-196 687.2 503 70.0
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.1e-195 686.0 491 70.7
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.5e-193 679.1 491 70.1
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 3.3e-193 678.7 491 69.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 3.3e-193 678.7 502 68.1
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 8.2e-192 674.1 491 69.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.4e-190 668.7 491 68.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 4.5e-190 668.3 496 70.4
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 7.2e-188 661.0 491 67.8
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.6e-187 659.8 494 68.4
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.8e-186 656.4 492 68.1
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.3e-185 651.7 495 67.3
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 7.4e-185 651.0 499 66.5
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 9.7e-185 650.6 495 66.9
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.7e-184 648.7 493 65.5
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-183 647.1 493 65.3
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 4.1e-183 645.2 500 66.6
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.6e-182 642.5 491 67.2
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.5e-182 641.7 491 65.6
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-180 637.1 501 65.3
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.9e-180 636.3 459 69.3
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.5e-180 636.0 491 66.2
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.2e-180 635.6 493 66.5
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 5.5e-180 634.8 458 68.1
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.8e-178 629.8 492 64.2
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.7e-177 624.8 491 63.5
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.7e-176 623.2 494 64.0
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 6.3e-176 621.3 491 64.2
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.1e-175 620.5 493 65.5
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.5e-174 615.5 492 63.2
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 5.0e-173 611.7 497 63.8
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.9e-172 609.8 491 63.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.2e-171 607.1 493 62.7
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.6e-171 606.7 494 62.6
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.6e-171 606.7 494 62.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.1e-171 606.3 495 60.8
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.1e-171 606.3 491 63.1
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.2e-170 601.7 403 74.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.3e-169 599.0 494 62.1
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 4.4e-169 598.6 465 64.7
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.3e-168 597.0 480 64.8
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.8e-168 595.9 559 56.7
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.1e-167 594.0 493 63.5
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.8e-167 593.2 498 62.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 5.3e-167 591.7 482 65.1
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.0e-166 589.7 403 71.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.6e-166 589.3 447 65.5
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.7e-166 587.8 493 60.0
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.3e-165 587.0 743 47.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.3e-165 587.0 492 61.6
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 5.0e-165 585.1 491 59.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 2.5e-164 582.8 406 70.0
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 7.2e-164 581.3 493 60.4
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 9.4e-164 580.9 491 59.3
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.7e-163 579.3 464 62.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 3.6e-163 578.9 413 70.5
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 6.1e-163 578.2 491 59.9
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 8.8e-162 574.3 502 59.0
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 9.1e-159 564.3 477 59.5
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.5e-158 562.4 493 58.6
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.0e-157 558.5 492 57.7
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 8.5e-157 557.8 493 58.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 8.5e-157 557.8 493 58.6
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.5e-156 557.0 493 58.2
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 6.1e-155 551.6 482 59.8
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 8.8e-154 547.7 476 60.3
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.7e-153 545.0 492 57.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 7.5e-153 544.7 476 59.0
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.8e-152 542.7 562 52.0
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-151 540.4 476 58.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.2e-150 537.3 499 56.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.2e-150 537.3 482 57.9
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.2e-150 537.3 447 60.9
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 3.5e-150 535.8 406 65.3
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 5.9e-150 535.0 492 56.3
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.3e-149 533.1 495 56.6
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.3e-148 529.3 517 57.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.2e-148 528.1 492 55.9
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 9.5e-148 527.7 401 65.1
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.2e-147 527.3 529 54.3
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.2e-147 527.3 487 56.1
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.1e-147 526.6 491 55.8
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 2.8e-147 526.2 487 55.9
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.7e-147 525.4 410 64.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 5.2e-146 521.9 468 57.9
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 8.9e-146 521.2 462 58.4
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.2e-145 520.8 398 63.8
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.4e-145 519.2 431 59.9
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.4e-145 519.2 398 63.8
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 9.8e-145 517.7 400 61.5
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.3e-144 517.3 447 59.1
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.2e-144 516.5 536 53.9
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.7e-144 515.8 406 62.3
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 6.3e-144 515.0 433 58.2
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-143 514.2 433 58.2
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.1e-143 514.2 433 58.2
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.1e-143 514.2 438 59.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.2e-142 510.8 420 62.6
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.6e-142 510.4 420 63.1
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 2.0e-142 510.0 415 64.1
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.7e-142 509.6 566 51.4
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.7e-141 506.9 513 54.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-141 506.9 407 60.4
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.7e-141 506.9 420 62.9
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.3e-141 506.5 402 62.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.0e-141 505.4 394 65.2
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.6e-141 505.0 420 62.4
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 8.6e-141 504.6 455 59.8
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.1e-140 504.2 493 56.0
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.5e-140 503.1 467 57.0
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.3e-140 502.7 499 54.3
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 5.6e-140 501.9 406 62.3
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 5.6e-140 501.9 431 57.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.1e-139 500.0 467 57.8
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.8e-139 499.6 521 53.9
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.1e-139 498.4 408 61.8
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.0e-138 497.7 465 55.3
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.8e-138 496.9 362 64.9
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.3e-138 496.5 496 53.4
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-138 496.5 434 57.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.1e-138 496.1 408 60.8
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 6.8e-138 495.0 480 55.4
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 6.8e-138 495.0 480 55.4
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 6.8e-138 495.0 480 55.4
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 6.8e-138 495.0 381 63.5
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 7.5e-137 491.5 481 55.1
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 7.5e-137 491.5 422 58.5
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 9.8e-137 491.1 481 55.1
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.3e-136 490.7 475 56.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.7e-136 489.2 492 54.1
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.7e-136 489.2 406 59.4
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.4e-135 486.5 405 60.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 8.6e-133 478.0 319 73.4
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.5e-132 476.5 355 68.2
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.1e-130 469.5 615 45.5
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.2e-129 467.6 357 66.9
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.7e-125 453.8 402 55.7
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.4e-121 439.5 402 54.0
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 5.8e-121 438.7 396 55.1
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.7e-120 436.0 313 68.7
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 5.4e-119 432.2 406 53.4
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.6e-118 430.6 379 59.9
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.1e-110 403.7 380 54.7
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.5e-87 327.0 335 53.4
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.5e-84 317.0 222 68.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.0e-81 307.4 274 58.8
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.2e-80 303.9 202 70.3
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.8e-80 303.1 258 61.2
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.1e-78 295.8 222 66.7
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-71 275.0 220 61.8
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.6e-70 271.2 238 57.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 2.5e-63 247.3 314 45.5
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.7e-54 217.2 417 37.9
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.3e-51 208.4 438 33.1
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.6e-49 201.4 304 39.1
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.2e-35 154.5 268 37.7
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.7e-35 153.7 170 50.0
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.6e-30 138.3 182 45.1
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 9.8e-28 129.0 655 23.2
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.7e-27 128.3 288 30.2
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 6.4e-27 126.3 105 60.0
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.1e-26 125.6 116 52.6
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.4e-26 123.2 141 49.6
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.3e-23 113.6 113 55.8
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 9.5e-23 112.5 125 51.2
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.9e-16 90.5 101 50.5
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 7.3e-15 86.3 237 34.6
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 7.5e-12 76.3 372 24.7
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 9.8e-12 75.9 74 50.0
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.9e-10 71.6 50 64.0


User provided reference genes

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