Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.2e-132 476.5 236 100.0
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.2e-120 434.5 229 93.9
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 6.6e-115 417.5 238 85.3
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 5.6e-114 414.5 231 87.4
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 9.6e-114 413.7 230 87.8
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.3e-113 413.3 230 87.4
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 2.1e-113 412.5 230 89.1
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 4.0e-112 408.3 230 87.8
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 4.0e-112 408.3 229 88.2
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 4.0e-112 408.3 225 88.4
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 9.0e-112 407.1 230 86.1
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.0e-111 406.0 230 86.1
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 2.0e-111 406.0 231 87.4
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.4e-111 405.2 231 87.0
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 1.3e-110 403.3 231 87.9
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.3e-110 403.3 231 86.1
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 1.7e-110 402.9 232 86.2
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 2.2e-110 402.5 230 84.8
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 2.9e-110 402.1 230 85.7
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 2.9e-110 402.1 231 87.0
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 2.9e-110 402.1 230 86.1
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 3.8e-110 401.7 231 87.4
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 3.8e-110 401.7 233 85.4
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 4.9e-110 401.4 231 86.1
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 4.9e-110 401.4 231 85.3
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 8.4e-110 400.6 225 87.6
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 8.4e-110 400.6 230 85.2
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.4e-109 399.8 234 84.6
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.2e-109 398.7 229 85.6
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 3.2e-109 398.7 230 84.3
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 4.2e-109 398.3 233 83.7
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 4.2e-109 398.3 230 83.9
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 4.2e-109 398.3 230 84.8
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 4.2e-109 398.3 230 84.8
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 7.1e-109 397.5 224 86.6
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 7.1e-109 397.5 231 86.6
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.2e-108 396.7 231 84.8
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.2e-108 396.7 236 83.1
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 2.7e-108 395.6 231 86.1
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 4.6e-108 394.8 233 84.1
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 6.0e-108 394.4 273 74.0
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.3e-107 393.3 230 84.8
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.3e-107 393.3 234 82.5
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 6.6e-107 391.0 231 84.0
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 8.7e-107 390.6 230 83.0
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.5e-106 389.8 230 84.8
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.3e-106 387.5 234 81.6
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 9.6e-106 387.1 240 80.0
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 1.3e-105 386.7 255 77.3
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.6e-105 386.3 234 81.2
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.8e-105 384.8 240 79.2
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 1.8e-104 382.9 227 83.3
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 6.9e-104 380.9 230 82.2
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.2e-103 380.2 231 82.7
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 3.4e-103 378.6 229 81.2
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 7.6e-103 377.5 232 81.5
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 2.9e-102 375.6 232 81.0
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.9e-102 375.6 230 81.3
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 8.4e-102 374.0 237 78.5
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 8.4e-102 374.0 233 79.8
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.4e-101 373.2 226 79.2
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.2e-101 372.1 233 79.4
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 1.0e-99 367.1 232 78.9
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.0e-99 367.1 223 80.7
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.3e-99 366.7 232 76.7
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.8e-99 366.3 234 77.8
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 2.3e-99 365.9 232 78.9
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.3e-99 365.9 232 76.3
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 3.0e-99 365.5 234 77.8
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 3.0e-99 365.5 234 77.8
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 3.0e-99 365.5 234 77.8
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 1.1e-98 363.6 231 77.9
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.5e-98 363.2 234 77.4
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.9e-98 362.8 232 78.4
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.5e-98 362.5 229 81.2
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 3.3e-98 362.1 226 77.4
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 4.3e-98 361.7 230 77.4
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 5.6e-98 361.3 232 77.2
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 5.6e-98 361.3 232 77.2
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 5.6e-98 361.3 232 77.2
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 5.6e-98 361.3 232 77.2
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 5.6e-98 361.3 232 77.2
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 5.6e-98 361.3 230 78.7
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 9.6e-98 360.5 232 78.0
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.3e-97 360.1 234 76.9
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.6e-97 359.8 231 76.6
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 2.1e-97 359.4 231 77.1
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 4.8e-97 358.2 231 76.6
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 6.2e-97 357.8 209 84.7
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 6.2e-97 357.8 230 77.0
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 6.2e-97 357.8 230 77.0
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.4e-96 356.7 236 74.2
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 2.4e-96 355.9 231 79.2
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 2.4e-96 355.9 238 73.1
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 3.1e-96 355.5 209 84.2
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 3.1e-96 355.5 232 76.3
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 1.2e-95 353.6 236 73.7
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.2e-95 353.6 236 73.7
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.2e-95 353.6 232 75.4
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.0e-95 352.8 236 73.3
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 7.6e-95 350.9 232 74.6
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 7.6e-95 350.9 232 75.0
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.0e-94 350.5 232 74.6
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.3e-94 350.1 233 75.5
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.7e-94 349.7 236 72.9
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.4e-93 346.7 244 72.1
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 1.2e-92 343.6 228 75.0
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.3e-91 340.1 245 75.5
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 3.1e-88 328.9 174 90.8
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 9.0e-88 327.4 227 74.0
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 9.3e-85 317.4 180 84.4
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.1e-82 310.5 233 69.5
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 4.5e-79 298.5 227 67.8
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.0e-75 287.3 235 57.4
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 3.0e-75 285.8 209 63.6
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.3e-73 280.4 217 61.3
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 2.2e-73 279.6 206 62.1
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 5.9e-71 271.6 174 76.4
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 1.0e-70 270.8 228 56.1
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 5.0e-70 268.5 149 85.2
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 8.5e-70 267.7 228 56.1
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.1e-69 267.3 228 63.2
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 3.6e-68 262.3 233 61.4
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 2.0e-66 256.5 148 83.1
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 4.8e-65 251.9 141 85.8
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.1e-61 240.7 174 62.6
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 2.2e-54 216.5 230 47.4
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 4.4e-50 202.2 228 42.1
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.2e-39 167.5 136 55.9
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.5e-39 166.0 94 83.0
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.0e-38 164.5 94 81.9
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.0e-38 164.5 94 81.9
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.3e-38 163.3 190 50.0
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.3e-35 153.3 87 82.8
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 8.9e-35 151.4 131 63.4
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 4.4e-34 149.1 109 71.6
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 5.7e-34 148.7 232 41.8
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 2.9e-33 146.4 220 38.6
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.9e-29 133.7 78 76.9
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 1.6e-28 130.6 213 35.7
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.0e-22 109.8 55 98.2
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.5e-21 106.7 56 87.5
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 7.3e-21 105.1 75 72.0
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 2.1e-20 103.6 56 87.5
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.1e-20 103.6 57 89.5
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 6.4e-17 92.0 93 55.9
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.4e-16 90.1 53 79.2
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.2e-12 77.8 44 79.5
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.4e-08 63.5 84 44.0


User provided reference genes

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