Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 0.0e+00 1162.5 588 100.0
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.1e-247 859.0 600 75.5
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.2e-245 853.2 596 73.7
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.5e-245 852.8 588 75.9
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 1.6e-242 842.8 611 74.0
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.6e-234 815.1 589 72.8
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 3.4e-229 798.5 589 72.5
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 4.7e-226 788.1 607 69.2
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.6e-224 782.3 597 70.5
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 3.3e-224 781.9 587 71.7
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 7.4e-224 780.8 612 69.8
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.3e-223 780.0 598 67.9
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.2e-223 779.2 600 67.3
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.8e-223 778.9 601 68.2
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.7e-223 778.5 601 68.2
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 6.3e-223 777.7 601 67.9
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.1e-222 773.9 619 67.7
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.5e-221 773.1 591 68.7
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 5.9e-221 771.2 576 70.7
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 5.0e-220 768.1 590 69.5
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.1e-219 766.9 572 71.5
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 2.5e-219 765.8 576 69.4
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 4.2e-219 765.0 601 67.9
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.5e-219 764.6 605 67.1
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 5.5e-219 764.6 581 68.8
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.6e-218 763.1 588 68.7
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.0e-217 760.4 601 67.4
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.0e-217 760.4 601 67.7
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.4e-217 760.0 599 69.1
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.9e-217 758.4 605 67.1
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.7e-217 757.7 613 66.7
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 4.4e-216 755.0 594 69.0
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 5.7e-216 754.6 594 69.4
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 9.7e-216 753.8 589 69.3
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.7e-215 753.1 599 67.9
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.2e-215 750.7 615 66.7
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 8.2e-215 750.7 609 66.8
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 1.1e-214 750.4 590 69.2
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.8e-214 749.6 605 66.6
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.4e-214 749.2 592 68.8
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 2.4e-214 749.2 603 66.8
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 3.1e-214 748.8 569 69.8
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 5.3e-214 748.0 580 69.3
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.6e-213 745.7 468 80.3
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 2.6e-213 745.7 614 65.8
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 5.9e-213 744.6 513 77.2
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.3e-212 743.4 591 68.4
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 3.8e-212 741.9 602 65.4
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 1.5e-211 740.0 602 68.1
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.5e-211 740.0 605 65.8
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 4.2e-211 738.4 515 75.5
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 5.5e-211 738.0 591 67.0
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 9.4e-211 737.3 595 66.6
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 2.7e-210 735.7 605 64.0
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 3.6e-210 735.3 587 67.0
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.3e-209 732.6 592 67.9
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.3e-209 732.6 599 65.8
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 5.2e-209 731.5 592 68.2
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.5e-208 729.9 600 66.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 7.5e-208 727.6 580 66.2
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 9.7e-208 727.2 588 66.8
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.1e-206 723.8 659 61.2
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.4e-206 723.4 595 64.5
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.8e-206 723.0 603 64.0
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 4.1e-206 721.8 598 65.2
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 5.3e-206 721.5 660 60.8
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.6e-205 719.9 621 64.1
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 3.5e-205 718.8 585 65.5
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 3.5e-205 718.8 623 61.3
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 3.5e-205 718.8 613 62.2
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 4.5e-205 718.4 594 65.8
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 1.3e-204 716.8 582 65.1
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.2e-204 716.1 520 72.5
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 2.9e-204 715.7 520 71.2
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 8.5e-204 714.1 599 64.6
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.1e-203 713.8 592 65.4
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 3.2e-203 712.2 615 63.1
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 4.2e-203 711.8 648 60.3
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 5.5e-203 711.4 605 63.5
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.2e-202 710.3 576 64.8
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.6e-202 709.9 598 63.4
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 2.1e-202 709.5 584 65.4
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 3.0e-201 705.7 615 62.8
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 3.0e-201 705.7 596 63.8
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.5e-200 703.4 589 64.0
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 4.4e-200 701.8 592 64.4
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 9.8e-200 700.7 580 65.2
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.7e-199 698.7 611 64.5
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 6.3e-199 698.0 581 64.2
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.1e-198 697.2 644 61.5
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.1e-198 697.2 664 59.8
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.1e-198 697.2 611 63.5
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 3.1e-198 695.7 592 64.4
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 3.5e-197 692.2 604 63.2
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 7.7e-197 691.0 562 66.0
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 7.7e-197 691.0 597 63.5
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.0e-196 690.6 569 63.4
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.5e-195 686.0 550 66.2
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.2e-195 685.3 588 63.3
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.3e-193 679.5 586 63.3
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.2e-192 677.2 599 60.8
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.2e-192 677.2 590 60.5
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.4e-192 675.2 615 61.0
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 9.8e-192 674.1 598 61.4
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.8e-192 674.1 600 61.7
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 1.3e-191 673.7 597 61.1
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 8.3e-191 671.0 602 61.5
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 3.1e-190 669.1 597 60.6
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.7e-189 666.0 621 59.7
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 5.0e-188 661.8 586 60.1
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 8.6e-188 661.0 588 61.7
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 2.5e-187 659.4 576 62.3
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 3.3e-187 659.1 593 60.9
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 3.6e-186 655.6 593 60.2
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 4.7e-186 655.2 599 60.8
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 8.0e-186 654.4 592 60.3
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 4.9e-183 645.2 575 60.2
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 5.4e-182 641.7 602 58.6
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 2.7e-181 639.4 592 59.5
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.7e-180 636.7 593 59.0
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.7e-180 636.7 593 59.2
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 3.0e-180 636.0 596 59.7
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.2e-178 628.2 479 69.7
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.4e-176 622.1 472 66.9
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 7.5e-176 621.3 579 59.4
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 9.2e-174 614.4 588 59.7
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.7e-173 612.8 549 61.0
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 3.5e-173 612.5 587 56.9
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.1e-171 607.4 559 58.7
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.5e-171 606.3 565 59.8
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.1e-169 600.9 569 58.0
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 3.0e-164 582.8 546 58.1
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.6e-164 581.6 624 53.8
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.2e-162 577.4 505 62.2
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 8.4e-159 564.7 586 53.8
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 4.6e-157 558.9 584 54.1
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 1.3e-151 540.8 604 51.7
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 4.9e-151 538.9 569 54.5
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 2.1e-149 533.5 583 53.9
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 2.0e-144 516.9 454 60.6
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.9e-143 512.3 448 61.8
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.9e-142 510.4 384 68.8
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.8e-138 496.5 339 74.9
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 2.5e-123 446.8 394 59.6
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 6.9e-121 438.7 315 72.7
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.1e-109 400.6 339 63.1
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 8.8e-108 395.2 669 38.1
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 3.1e-97 360.1 370 54.1
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.9e-66 256.5 274 56.6
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.1e-65 255.4 163 82.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 3.0e-63 247.3 228 62.7
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 2.6e-59 234.2 248 54.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 6.0e-48 196.4 138 73.2
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 7.3e-38 162.9 290 35.2
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.2e-34 151.4 476 26.3
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 6.0e-32 143.3 551 24.7
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 2.4e-28 131.3 165 52.7
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 8.4e-26 122.9 84 70.2
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 3.7e-21 107.5 118 50.0
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 4.8e-21 107.1 80 60.0
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 1.4e-20 105.5 73 68.5
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 7.6e-19 99.8 83 67.5
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 8.4e-18 96.3 72 66.7
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.9e-17 95.1 66 78.8
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 7.9e-16 89.7 62 71.0
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 3.9e-15 87.4 101 49.5
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.5e-14 84.7 202 35.6
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 9.0e-12 76.3 103 45.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.0e-07 62.8 35 82.9
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 3.9e-07 60.8 148 34.5
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 3.9e-07 60.8 36 80.6
Aqoxy6G01667 Aquilegia oxysepala HOM05D000873 ORTHO05D018236 1.9e-06 58.5 41 65.9


User provided reference genes

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