Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.1e-48 195.3 94 100.0
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.0e-13 80.1 72 61.1
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 4.6e-11 71.2 38 86.8
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 3.9e-10 68.2 37 89.2
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 5.1e-10 67.8 37 86.5
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 6.7e-10 67.4 37 86.5
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 6.7e-10 67.4 37 89.2
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 8.8e-10 67.0 37 86.5
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 8.8e-10 67.0 37 86.5
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 8.8e-10 67.0 37 86.5
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 8.8e-10 67.0 37 86.5
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 8.8e-10 67.0 37 86.5
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 8.8e-10 67.0 42 78.6
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 1.1e-09 66.6 40 82.5
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 1.5e-09 66.2 37 86.5
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 1.5e-09 66.2 37 86.5
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.5e-09 66.2 37 86.5
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 1.5e-09 66.2 37 86.5
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 2.0e-09 65.9 37 83.8
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 2.0e-09 65.9 37 83.8
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.0e-09 65.9 38 78.9
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 2.0e-09 65.9 37 86.5
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.0e-09 65.9 37 86.5
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.0e-09 65.9 37 86.5
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 2.5e-09 65.5 37 86.5
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 2.5e-09 65.5 37 86.5
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 2.5e-09 65.5 37 83.8
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 86.5
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 86.5
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 83.8
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 83.8
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 86.5
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 86.5
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 86.5
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 86.5
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 3.3e-09 65.1 37 86.5
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 3.3e-09 65.1 40 82.5
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 4.3e-09 64.7 37 83.8
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 4.3e-09 64.7 37 83.8
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 5.7e-09 64.3 37 83.8
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 5.7e-09 64.3 37 83.8
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 5.7e-09 64.3 37 81.1
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 5.7e-09 64.3 37 81.1
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 7.4e-09 63.9 37 83.8
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 9.7e-09 63.5 40 75.0
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 9.7e-09 63.5 37 83.8
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 1.3e-08 63.2 37 81.1
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 1.3e-08 63.2 37 78.4
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 1.3e-08 63.2 37 78.4
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 1.3e-08 63.2 37 78.4
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 1.7e-08 62.8 37 83.8
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 2.2e-08 62.4 37 81.1
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 2.8e-08 62.0 37 81.1
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 2.8e-08 62.0 37 81.1
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.8e-08 62.0 37 78.4
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 2.8e-08 62.0 37 81.1
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 2.8e-08 62.0 37 81.1
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 3.7e-08 61.6 37 81.1
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 3.7e-08 61.6 37 83.8
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 4.8e-08 61.2 37 81.1
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 4.8e-08 61.2 37 78.4
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 4.8e-08 61.2 37 78.4
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 4.8e-08 61.2 37 78.4
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 6.3e-08 60.8 37 78.4
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 6.3e-08 60.8 37 78.4
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 6.3e-08 60.8 37 78.4
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 6.3e-08 60.8 37 78.4
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 6.3e-08 60.8 53 60.4
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 8.2e-08 60.5 52 63.5
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 8.2e-08 60.5 37 78.4
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 8.2e-08 60.5 37 78.4
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 1.1e-07 60.1 37 78.4
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 1.4e-07 59.7 37 78.4
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 1.4e-07 59.7 37 75.7
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 1.8e-07 59.3 38 76.3
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 1.8e-07 59.3 38 76.3
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 1.8e-07 59.3 37 75.7
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 2.4e-07 58.9 38 76.3
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 2.4e-07 58.9 37 78.4
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 2.4e-07 58.9 37 78.4
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 2.4e-07 58.9 37 78.4
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 2.4e-07 58.9 37 75.7
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 2.4e-07 58.9 37 75.7
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 2.4e-07 58.9 37 78.4
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.1e-07 58.5 37 75.7
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.1e-07 58.5 37 75.7
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 5.3e-07 57.8 37 75.7
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 6.9e-07 57.4 37 75.7
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 6.9e-07 57.4 37 75.7
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 2.0e-06 55.8 35 77.1
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 2.6e-06 55.5 37 73.0
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 5.9e-06 54.3 40 65.0


User provided reference genes

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