Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 3521.9 1833 100.0
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 3134.4 1836 88.7
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2879.0 1842 80.9
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2801.5 1840 79.2
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2783.4 1845 78.5
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2765.7 1884 77.0
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2751.1 1861 77.3
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2717.6 1840 76.5
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2716.8 1854 76.4
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2703.7 1838 76.7
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2691.4 1842 75.7
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2679.8 1826 76.7
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2675.6 1843 76.4
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2649.4 1841 75.5
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2648.2 1844 74.9
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2641.7 1843 74.8
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2639.0 1823 75.7
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2630.1 1844 74.8
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2627.4 1831 75.2
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2621.7 1850 74.6
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2620.5 1839 75.1
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2614.7 1874 73.4
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2604.3 1842 74.3
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2600.1 1842 74.4
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2590.5 1840 73.9
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2575.0 1826 74.1
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2574.7 1843 73.7
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2574.3 1821 74.5
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2568.5 1826 74.1
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2568.1 1830 73.6
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2528.4 1850 72.7
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2519.6 1841 71.8
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2512.6 1839 72.5
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2509.9 1858 71.7
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2507.6 1840 71.2
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2506.5 1854 72.2
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2504.2 1842 71.1
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2501.9 1864 72.0
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2501.5 1854 72.1
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2497.6 1841 71.2
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2497.2 1841 70.8
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2491.1 1917 69.4
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2489.9 1840 71.1
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2489.1 1805 72.4
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2489.1 1840 70.8
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2486.4 1852 72.1
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2472.6 1841 70.3
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2472.2 1907 69.0
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2471.4 1843 71.6
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2468.7 1840 70.7
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2448.7 1840 69.9
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2447.9 1841 70.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2447.2 1841 69.7
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2441.4 1843 69.4
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2434.4 1838 70.9
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2431.4 1845 70.4
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2430.6 1816 70.3
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2427.5 1850 69.5
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2427.5 1850 69.5
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2414.8 1839 69.3
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2405.9 1841 69.9
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2372.8 1842 68.6
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2372.4 1846 68.7
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2345.1 1846 68.5
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2337.4 1844 68.3
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2318.9 1849 67.3
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2318.9 1841 67.8
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2312.0 1835 67.1
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2308.5 1838 67.6
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2290.8 1741 68.7
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2279.6 1837 67.0
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2271.1 1859 65.7
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2266.9 1834 66.7
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2262.3 1840 66.5
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2196.8 1873 63.8
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2182.1 1837 64.4
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2171.0 1845 64.2
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2156.3 1830 65.0
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2151.3 1836 64.5
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2149.4 1836 64.2
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2112.0 1839 63.3
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2109.7 1845 63.3
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2105.9 1837 63.0
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2104.3 1834 63.0
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2098.2 1834 63.2
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2095.5 1775 64.1
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2083.5 1838 62.3
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2070.4 1834 62.7
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2048.9 1840 62.5
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1983.0 1833 60.8
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1983.0 1837 60.7
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1982.2 1837 60.6
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1975.3 1833 59.8
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1969.1 1854 60.0
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1936.4 1851 58.0
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1882.1 1840 56.6
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1859.7 1373 71.4
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1810.0 1705 59.3
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1780.4 1219 75.9
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1763.0 1500 63.7
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1710.7 1807 54.7
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1707.2 1581 61.7
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1672.5 1335 66.4
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1672.1 1345 65.8
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1593.9 1305 64.6
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1579.7 1382 63.6
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1500.7 1811 50.9
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1470.3 1193 64.5
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1413.3 1988 45.4
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1339.7 1386 56.5
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1285.0 1023 68.1
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1272.3 1149 60.6
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1252.3 1001 66.1
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1245.0 1852 43.1
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1232.2 1929 41.4
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1221.5 1939 41.1
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1192.6 1991 39.8
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1102.0 872 67.3
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 8.7e-271 938.3 1384 44.3
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 2.8e-261 906.7 1486 40.6
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 6.3e-245 852.4 632 69.9
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 8.0e-224 782.3 518 77.4
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 1.7e-213 748.0 487 78.4
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 2.9e-202 710.7 490 77.1
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 4.7e-200 703.4 611 61.9
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 4.1e-196 690.3 466 75.5
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 9.9e-166 589.3 380 80.3
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 3.8e-165 587.4 623 54.1
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.9e-164 585.1 361 80.6
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 2.4e-164 584.7 360 80.6
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 4.6e-163 580.5 560 57.5
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 8.7e-162 576.2 378 80.7
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 9.6e-161 572.8 423 67.1
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 1.5e-158 565.5 485 62.9
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.9e-140 505.4 384 72.1
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 5.3e-135 487.3 324 72.2
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 7.7e-126 456.8 381 61.4
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 3.9e-122 444.5 435 59.1
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.1e-119 436.4 259 83.4
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 4.8e-112 411.0 266 85.0
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.4e-79 302.4 305 57.7
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 3.2e-79 302.0 306 57.5
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.3e-77 296.6 310 58.7
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 8.1e-51 207.6 123 85.4
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 2.0e-49 203.0 141 70.9
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 2.5e-23 116.3 70 88.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 4.2e-23 115.5 141 48.9
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 3.3e-20 105.9 71 77.5
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 5.3e-18 98.6 70 71.4
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 9.0e-18 97.8 585 22.7
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 2.5e-15 89.7 100 56.0
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.5e-15 89.7 70 64.3
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 4.2e-15 89.0 66 69.7
Nn3g17882 Nelumbo nucifera HOM05D004252 ORTHO05D005101 7.9e-14 84.7 76 67.1
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.5e-12 80.5 70 54.3
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 1.5e-12 80.5 70 54.3
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 1.9e-12 80.1 204 27.5
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.3e-11 77.4 39 82.1
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.8e-11 75.5 34 91.2
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.8e-11 75.5 34 91.2
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.8e-11 75.5 34 91.2
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 4.8e-11 75.5 34 91.2
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 4.8e-11 75.5 34 91.2
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 3.8e-08 65.9 179 29.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 8.5e-08 64.7 193 30.1
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 4.2e-07 62.4 37 81.1


User provided reference genes

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