Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.7e-103 379.4 198 100.0
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 6.3e-34 148.3 361 35.5
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 3.2e-22 109.4 365 29.0
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 1.2e-21 107.5 355 32.1
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.1e-21 106.7 184 40.2
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 6.1e-21 105.1 219 39.7
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 8.0e-21 104.8 258 36.4
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.0e-20 104.4 184 39.1
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 1.4e-20 104.0 358 30.2
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.3e-20 103.2 183 40.4
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 2.3e-20 103.2 362 29.8
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.3e-20 103.2 184 39.7
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 3.0e-20 102.8 364 28.6
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 2.0e-19 100.1 367 30.0
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 2.0e-19 100.1 357 29.4
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 3.4e-19 99.4 184 39.1
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 4.4e-19 99.0 185 38.9
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 7.5e-19 98.2 352 28.7
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 7.5e-19 98.2 359 29.5
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 9.8e-19 97.8 363 29.8
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 9.8e-19 97.8 355 29.0
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 3.7e-18 95.9 371 28.3
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 3.7e-18 95.9 367 29.4
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 3.7e-18 95.9 367 29.4
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 6.3e-18 95.1 177 39.5
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 8.3e-18 94.7 362 27.9
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 8.3e-18 94.7 357 28.6
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 1.8e-17 93.6 180 39.4
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 1.8e-17 93.6 178 38.8
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 3.1e-17 92.8 352 28.4
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 3.1e-17 92.8 177 39.0
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 4.1e-17 92.4 359 28.4
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 7.0e-17 91.7 184 38.6
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 2.0e-16 90.1 185 35.7
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 2.0e-16 90.1 195 36.4
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 2.7e-16 89.7 187 36.9
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 2.7e-16 89.7 361 28.5
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 4.5e-16 89.0 358 27.7
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 4.5e-16 89.0 182 37.4
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.9e-16 88.6 363 27.8
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 5.9e-16 88.6 182 36.8
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.0e-15 87.8 182 36.8
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 1.0e-15 87.8 159 39.6
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.3e-15 87.4 363 27.5
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 1.7e-15 87.0 360 28.1
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 1.7e-15 87.0 187 35.8
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 2.9e-15 86.3 182 36.8
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 3.8e-15 85.9 179 37.4
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 8.5e-15 84.7 357 27.5
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 8.5e-15 84.7 174 37.4
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 1.1e-14 84.3 363 27.0
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.5e-14 84.0 163 37.4
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 1.9e-14 83.6 359 28.7
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 1.9e-14 83.6 172 37.2
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 4.2e-14 82.4 364 26.6
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 4.2e-14 82.4 170 37.1
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 5.5e-14 82.0 184 33.7
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 5.5e-14 82.0 365 27.4
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 7.2e-14 81.6 173 37.0
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 9.4e-14 81.3 185 33.0
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 9.4e-14 81.3 371 25.6
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 9.4e-14 81.3 174 36.8
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 9.4e-14 81.3 173 36.4
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 2.7e-13 79.7 361 24.7
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 3.6e-13 79.3 172 37.2
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 6.1e-13 78.6 181 36.5
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 8.0e-13 78.2 185 31.4
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 1.0e-12 77.8 173 37.0
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 1.4e-12 77.4 355 25.9
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.4e-12 77.4 173 36.4
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 2.3e-12 76.6 372 26.1
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 2.3e-12 76.6 178 36.0
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 3.0e-12 76.3 185 29.7
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 4.0e-12 75.9 192 33.9
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 4.0e-12 75.9 174 34.5
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 5.2e-12 75.5 363 25.6
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 8.8e-12 74.7 189 32.8
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 8.8e-12 74.7 393 25.4
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 8.8e-12 74.7 158 32.9
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 1.2e-11 74.3 176 31.8
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.2e-11 74.3 191 33.0
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 1.2e-11 74.3 178 33.1
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.5e-11 73.9 173 35.3
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 1.5e-11 73.9 172 36.0
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 1.5e-11 73.9 389 25.7
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 5.7e-11 72.0 316 27.2
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 9.8e-11 71.2 181 34.8
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 1.3e-10 70.9 183 32.2
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 1.3e-10 70.9 184 31.0
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.3e-10 70.9 85 50.6
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 2.8e-10 69.7 400 23.8
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 3.7e-10 69.3 184 31.0
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 4.9e-10 68.9 79 53.2
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 8.3e-10 68.2 175 33.1
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 1.4e-09 67.4 172 35.5
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 2.4e-09 66.6 187 27.8
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 3.1e-09 66.2 314 27.7
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 4.1e-09 65.9 349 24.6
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 1.2e-08 64.3 194 28.4
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 3.5e-08 62.8 194 28.4
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 3.5e-08 62.8 59 57.6
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 5.9e-08 62.0 202 29.2
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 7.7e-08 61.6 342 24.3
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 5.0e-07 58.9 157 32.5
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 5.0e-07 58.9 201 29.9
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 1.5e-06 57.4 44 65.9
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 4.3e-06 55.8 54 51.9
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 9.5e-06 54.7 90 38.9


User provided reference genes

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