Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 0.0e+00 1558.1 829 100.0
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.5e-254 883.2 650 73.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.9e-250 869.0 655 72.2
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.6e-248 863.2 654 72.6
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 6.1e-248 861.3 657 72.3
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.3e-242 843.6 652 71.5
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 3.2e-241 839.0 654 69.9
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 5.2e-239 831.6 600 73.7
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 8.8e-239 830.9 654 69.3
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 8.8e-239 830.9 595 74.3
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 5.7e-238 828.2 658 69.6
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 3.1e-236 822.4 661 69.6
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 5.9e-235 818.1 654 68.3
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.1e-233 813.9 673 66.7
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.5e-233 812.8 673 66.7
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 3.2e-233 812.4 609 72.4
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 3.2e-233 812.4 649 68.7
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.7e-232 809.3 673 66.6
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 3.6e-232 808.9 657 68.3
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.2e-230 803.9 655 69.2
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 3.7e-229 798.9 653 68.1
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.1e-228 795.8 657 66.7
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.6e-227 793.5 648 67.9
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 2.3e-226 789.6 595 71.9
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 5.0e-226 788.5 651 67.9
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 6.6e-226 788.1 651 67.7
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.1e-225 787.3 619 69.0
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.3e-225 785.4 634 66.6
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 5.6e-225 785.0 660 66.1
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 9.5e-225 784.3 617 68.6
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.2e-224 783.9 649 67.2
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 6.1e-224 781.6 602 71.1
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.4e-223 780.4 643 65.9
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 5.2e-223 778.5 647 65.7
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 6.8e-223 778.1 647 65.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 2.0e-222 776.5 619 68.0
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 2.6e-222 776.2 663 66.7
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 4.1e-220 768.8 584 70.2
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 7.0e-220 768.1 650 64.8
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 2.0e-219 766.5 686 63.1
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.7e-219 766.1 598 69.4
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 3.5e-219 765.8 668 64.4
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.0e-218 764.2 645 65.6
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.7e-218 763.5 607 68.7
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.1e-217 760.8 583 69.5
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.1e-217 760.8 637 65.6
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 4.3e-217 758.8 590 69.2
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 7.3e-217 758.1 637 65.6
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 9.5e-217 757.7 671 63.5
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.6e-216 756.9 589 68.4
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 8.0e-216 754.6 604 66.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 2.3e-215 753.1 585 68.2
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.2e-215 751.9 626 66.6
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.8e-215 751.5 626 66.6
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 5.8e-214 748.4 649 63.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.5e-214 748.0 628 66.2
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.7e-213 746.9 659 62.8
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.1e-212 744.2 593 68.0
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.2e-211 740.7 648 62.2
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.3e-210 737.3 655 63.8
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 4.3e-209 732.3 589 67.4
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 7.3e-209 731.5 626 66.1
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 6.2e-208 728.4 637 63.3
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.4e-207 727.2 649 61.8
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.0e-207 725.7 637 63.0
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.7e-205 720.3 650 61.7
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 8.3e-205 718.0 650 61.1
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 7.1e-204 714.9 637 62.2
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.0e-202 711.1 652 60.3
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 3.3e-201 706.1 659 62.1
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 5.6e-201 705.3 654 60.1
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 2.1e-200 703.4 659 59.9
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.1e-200 703.4 601 64.1
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.8e-200 703.0 634 62.1
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 3.1e-199 699.5 646 61.1
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 5.2e-199 698.7 600 68.3
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 8.9e-199 698.0 673 58.8
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 5.8e-198 695.3 667 59.1
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 9.9e-198 694.5 667 58.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-197 694.1 661 59.0
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 2.2e-197 693.3 654 59.8
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 2.9e-197 693.0 659 59.2
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.9e-197 693.0 649 58.2
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.7e-195 686.4 654 59.2
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.0e-194 682.9 610 64.9
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 8.6e-194 681.4 587 61.7
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 8.6e-194 681.4 590 63.4
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 5.6e-193 678.7 651 57.3
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.2e-192 677.6 625 61.1
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.0e-190 670.2 546 65.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 9.9e-190 667.9 649 57.5
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 2.1e-187 660.2 655 60.3
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.5e-185 654.1 518 67.0
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 4.5e-182 642.5 659 58.0
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.4e-180 637.5 652 56.3
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 6.0e-179 632.1 647 56.1
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 4.3e-177 625.9 661 55.8
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 3.8e-173 612.8 664 53.8
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.6e-171 607.4 630 54.3
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 4.6e-171 605.9 662 56.2
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.5e-161 573.5 441 71.2
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 7.2e-148 528.9 606 51.8
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 7.9e-139 498.8 629 48.3
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 8.8e-138 495.4 584 47.4
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.0e-129 467.6 607 45.0
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 7.5e-129 465.7 329 73.9
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.2e-121 441.8 642 43.3
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 5.4e-111 406.4 661 42.4
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 2.3e-109 401.0 404 59.2
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 9.5e-108 395.6 646 38.9
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.3e-96 358.6 560 42.3
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.2e-95 354.0 351 57.8
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 6.0e-94 349.7 330 58.2
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.0e-93 346.7 431 49.9
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.9e-92 344.7 250 73.6
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 9.5e-92 342.4 303 62.0
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 2.9e-80 304.3 374 48.4
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 4.8e-67 260.4 660 30.6
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 9.9e-65 252.7 701 29.7
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 9.6e-52 209.5 148 68.2
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.8e-48 197.6 152 69.7
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.9e-47 195.3 264 48.1
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.6e-46 192.2 258 47.3
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 5.1e-45 187.2 637 26.8
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 2.5e-39 168.3 258 43.0
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 3.2e-39 167.9 258 43.0
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 7.9e-38 163.3 178 53.9
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 5.3e-34 150.6 95 76.8
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 3.4e-33 147.9 99 75.8
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.0e-32 146.4 115 65.2
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 2.2e-32 145.2 130 56.9
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.8e-29 135.6 146 54.8
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.1e-28 132.9 612 28.9
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.5e-25 122.5 245 35.9
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.4e-25 121.3 196 43.4
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 3.9e-21 107.8 309 28.8
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 2.0e-17 95.5 100 55.0
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.6e-17 95.1 120 49.2
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 4.5e-17 94.4 142 40.8
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 7.7e-17 93.6 129 45.0
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 1.0e-16 93.2 142 40.1
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.0e-16 93.2 142 40.1
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 1.3e-16 92.8 142 40.1
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 1.3e-16 92.8 142 40.1
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 3.8e-16 91.3 142 39.4
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 4.2e-15 87.8 182 39.6
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 8.0e-14 83.6 147 42.9
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.2e-12 79.7 99 51.5
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 2.0e-09 68.9 45 66.7
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.5e-09 68.2 44 70.5
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 4.2e-07 61.2 53 52.8
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 4.2e-07 61.2 53 52.8
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 4.7e-06 57.8 72 48.6


User provided reference genes

Program Settings