Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0291 Trochodendron aralioides HOM05D009728 ORTHO05D011965 2.2e-79 298.9 153 100.0
Nn1g02325 Nelumbo nucifera HOM05D009728 ORTHO05D011965 9.2e-33 144.1 102 75.5
QL03p024609 Quercus lobata HOM05D009728 ORTHO05D011965 5.2e-28 128.3 129 56.6
Duzib106G1249 Durio zibethinus HOM05D009728 ORTHO05D011965 2.0e-27 126.3 142 51.4
GSVIVG01021841001 Vitis vinifera HOM05D009728 ORTHO05D011965 2.6e-27 125.9 115 60.0
Thecc.05G288100 Theobroma cacao HOM05D009728 ORTHO05D011965 2.9e-26 122.5 153 51.0
PGR004G2732 Punica granatum HOM05D009728 ORTHO05D011965 1.1e-25 120.6 134 52.2
Prupe.6G340300 Prunus persica HOM05D009728 ORTHO05D011965 1.9e-25 119.8 142 50.7
Gohir.D08G231300 Gossypium hirsutum HOM05D009728 ORTHO05D011965 5.4e-25 118.2 111 55.9
Gorai.004G245700 Gossypium raimondii HOM05D009728 ORTHO05D011965 5.4e-25 118.2 111 55.9
Manes.08G128200 Manihot esculenta HOM05D009728 ORTHO05D011965 1.6e-24 116.7 119 52.9
QL03p024758 Quercus lobata HOM05D009728 ORTHO05D011965 2.0e-24 116.3 145 49.7
Gohir.A08G214300 Gossypium hirsutum HOM05D009728 ORTHO05D011965 6.0e-24 114.8 111 54.1
Potri.013G037900 Populus trichocarpa HOM05D009728 ORTHO05D011965 3.0e-23 112.5 120 51.7
Sabra13G0035900 Salix brachista HOM05D009728 ORTHO05D011965 3.9e-23 112.1 127 52.0
Eucgr.L02102 Eucalyptus grandis HOM05D009728 ORTHO05D011965 6.6e-23 111.3 115 53.0
Manes.09G155500 Manihot esculenta HOM05D009728 ORTHO05D011965 6.6e-23 111.3 105 57.1
Ciclev10002536m.g Citrus clementina HOM05D009728 ORTHO05D011965 3.3e-22 109.0 162 43.8
TWI12G0190 Tripterygium wilfordii HOM05D009728 ORTHO05D011965 5.6e-22 108.2 126 48.4
COL.COLO4_15288 Corchorus olitorius HOM05D009728 ORTHO05D011965 7.3e-22 107.8 135 48.1
TAR362G0346 Trochodendron aralioides HOM05D009728 ORTHO05D414740 1.3e-18 97.1 53 92.5
Dinv11539 Davidia involucrata HOM05D009728 ORTHO05D011965 5.4e-17 91.7 73 61.6
arahy.Tifrunner.gnm1.ann1.UKXE3V Arachis hypogaea HOM05D009728 ORTHO05D011965 2.3e-15 86.3 124 43.5
arahy.Tifrunner.gnm1.ann1.06AVZ6 Arachis hypogaea HOM05D009728 ORTHO05D011965 8.6e-15 84.3 124 43.5
Mapoly0004s0228 Marchantia polymorpha HOM05D002614 ORTHO05D002794 1.4e-12 77.0 114 41.2
Potri.005G050800 Populus trichocarpa HOM05D009728 ORTHO05D011965 6.4e-10 68.2 63 58.7
EL10Ac4g07676 Beta vulgaris HOM05D002614 ORTHO05D002794 1.4e-09 67.0 107 34.6
AUR62015900 Chenopodium quinoa HOM05D002614 ORTHO05D002794 3.2e-09 65.9 107 35.5
Pp3c11_4820 Physcomitrium patens HOM05D002614 ORTHO05D002794 4.1e-09 65.5 113 38.9
AUR62020322 Chenopodium quinoa HOM05D002614 ORTHO05D002794 7.1e-09 64.7 107 34.6
SGA_v2.0_scaffold97G29136 Striga asiatica HOM05D002614 ORTHO05D002794 9.2e-09 64.3 107 36.4
SGA_v2.0_scaffold97G29138 Striga asiatica HOM05D002614 ORTHO05D002794 9.2e-09 64.3 107 36.4
Ah.06g182130 Amaranthus hybridus HOM05D002614 ORTHO05D002794 1.6e-08 63.5 107 34.6
SGA_v2.0_scaffold478G52217 Striga asiatica HOM05D002614 ORTHO05D002794 3.5e-08 62.4 107 35.5
CBR_g90925 Chara braunii HOM05D002614 ORTHO05D002794 4.6e-08 62.0 94 36.2
vmacro22995 Vaccinium macrocarpon HOM05D002614 ORTHO05D002794 4.6e-08 62.0 125 32.0
MBI10_g21034_MAGBIO Magnolia biondii HOM05D002614 ORTHO05D002794 6.0e-08 61.6 110 37.3
Lsat_1_v5_gn_9_90800 Lactuca sativa HOM05D002614 ORTHO05D002794 7.8e-08 61.2 105 36.2
Nitab4.5_0001160g0040 Nicotiana tabacum HOM05D002614 ORTHO05D002794 7.8e-08 61.2 107 34.6
CSS0015414 Camellia sinensis var. sinensis HOM05D002614 ORTHO05D002794 1.0e-07 60.8 114 35.1
Peaxi162Scf01165g00216 Petunia axillaris HOM05D002614 ORTHO05D002794 1.0e-07 60.8 107 33.6
MSTRG.6965 Avicennia marina HOM05D002614 ORTHO05D002794 1.3e-07 60.5 110 33.6
CSS0025854 Camellia sinensis var. sinensis HOM05D002614 ORTHO05D002794 1.3e-07 60.5 115 33.0
Sc03g0008270 Simmondsia chinensis HOM05D002614 ORTHO05D002794 1.3e-07 60.5 107 33.6
Nitab4.5_0005965g0010 Nicotiana tabacum HOM05D002614 ORTHO05D002794 1.7e-07 60.1 107 33.6
Os02g0119400 Oryza sativa ssp. japonica HOM05D002614 ORTHO05D002794 1.7e-07 60.1 115 37.4
Peaxi162Scf00235g00833 Petunia axillaris HOM05D002614 ORTHO05D002794 1.7e-07 60.1 107 33.6
Sc07g0002860 Simmondsia chinensis HOM05D002614 ORTHO05D002794 1.7e-07 60.1 110 32.7
Nitab4.5_0003869g0080 Nicotiana tabacum HOM05D002614 ORTHO05D002794 2.3e-07 59.7 107 34.6
TPR.G30646 Trifolium pratense HOM05D002614 ORTHO05D002794 3.0e-07 59.3 106 33.0
Nn1g08618 Nelumbo nucifera HOM05D002614 ORTHO05D002794 5.1e-07 58.5 106 33.0
Carub.0002s2647 Capsella rubella HOM05D002614 ORTHO05D002794 6.6e-07 58.2 106 33.0
Lsat_1_v5_gn_5_2800 Lactuca sativa HOM05D002614 ORTHO05D002794 6.6e-07 58.2 98 37.8
TWI39G0254 Tripterygium wilfordii HOM05D002614 ORTHO05D002794 6.6e-07 58.2 123 31.7
HPP92_024443 Vanilla planifolia HOM05D002614 ORTHO05D002794 6.6e-07 58.2 113 34.5
ClCG10G004910 Citrullus lanatus HOM05D002614 ORTHO05D002794 8.6e-07 57.8 148 31.1
Dinv22223 Davidia involucrata HOM05D002614 ORTHO05D002794 8.6e-07 57.8 115 31.3
ECA240G2676 Erigeron canadensis HOM05D002614 ORTHO05D002794 8.6e-07 57.8 104 33.7
Medtr5g094010 Medicago truncatula HOM05D002614 ORTHO05D002794 8.6e-07 57.8 106 34.0
Rhsim06G0224200 Rhododendron simsii HOM05D002614 ORTHO05D002794 1.1e-06 57.4 106 33.0
Hund23193 Selenicereus undatus HOM05D002614 ORTHO05D002794 1.1e-06 57.4 107 30.8
SEGI_05113 Sequoiadendron giganteum HOM05D002614 ORTHO05D002794 1.1e-06 57.4 117 32.5
unitig_8.g4787 Utricularia gibba HOM05D002614 ORTHO05D002794 1.1e-06 57.4 110 32.7
Actinidia10754 Actinidia chinensis HOM05D002614 ORTHO05D002794 1.5e-06 57.0 115 32.2
Aqoxy1G01018 Aquilegia oxysepala HOM05D002614 ORTHO05D002794 1.5e-06 57.0 106 32.1
Lj1C881G8 Lonicera japonica HOM05D002614 ORTHO05D002794 1.5e-06 57.0 127 32.3
Solyc07g065030.3 Solanum lycopersicum HOM05D002614 ORTHO05D002794 1.5e-06 57.0 107 31.8
Sopen07g033240 Solanum pennellii HOM05D002614 ORTHO05D002794 1.5e-06 57.0 107 31.8
PGSC0003DMG400022297 Solanum tuberosum HOM05D002614 ORTHO05D002794 1.5e-06 57.0 107 31.8
CAN.G337.49 Capsicum annuum HOM05D002614 ORTHO05D002794 2.5e-06 56.2 107 30.8
Oeu005514.1 Olea europaea HOM05D002614 ORTHO05D002794 2.5e-06 56.2 103 34.0
unitig_578.g16291 Utricularia gibba HOM05D002614 ORTHO05D002794 2.5e-06 56.2 110 32.7
CAN.G654.4 Capsicum annuum HOM05D002614 ORTHO05D002794 3.3e-06 55.8 110 31.8
Gohir.D01G071500 Gossypium hirsutum HOM05D002614 ORTHO05D002794 3.3e-06 55.8 106 33.0
Gorai.002G094300 Gossypium raimondii HOM05D002614 ORTHO05D002794 3.3e-06 55.8 106 33.0
Actinidia00115 Actinidia chinensis HOM05D002614 ORTHO05D002794 4.3e-06 55.5 106 31.1
Thhalv10019084m.g Eutrema salsugineum HOM05D002614 ORTHO05D002794 4.3e-06 55.5 105 32.4
PGR083G1567 Punica granatum HOM05D002614 ORTHO05D002794 4.3e-06 55.5 113 28.3
Ciclev10009364m.g Citrus clementina HOM05D002614 ORTHO05D002794 5.6e-06 55.1 131 29.8
CsaV3_3G004560 Cucumis sativus L. HOM05D002614 ORTHO05D002794 5.6e-06 55.1 127 33.1
LjContig00272g0021698 Lotus japonicus HOM05D002614 ORTHO05D002794 5.6e-06 55.1 123 31.7
Oeu054313.1 Olea europaea HOM05D002614 ORTHO05D002794 5.6e-06 55.1 115 33.0
THA.LOC104808157 Tarenaya hassleriana HOM05D002614 ORTHO05D002794 5.6e-06 55.1 107 31.8
TAR627G0774 Trochodendron aralioides HOM05D002614 ORTHO05D002794 5.6e-06 55.1 106 32.1
CANSAT25G0829 Cannabis sativa HOM05D002614 ORTHO05D002794 7.3e-06 54.7 106 32.1
CARHR073320 Cardamine hirsuta HOM05D002614 ORTHO05D002794 7.3e-06 54.7 106 32.1
Ca_06352_v3 Cicer arietinum L. HOM05D002614 ORTHO05D002794 7.3e-06 54.7 106 31.1
MELO3C014154.2 Cucumis melo HOM05D002614 ORTHO05D002794 7.3e-06 54.7 133 32.3
Glyma.14G017700 Glycine max HOM05D002614 ORTHO05D002794 7.3e-06 54.7 106 31.1
Manes.15G065600 Manihot esculenta HOM05D002614 ORTHO05D002794 7.3e-06 54.7 117 29.1
Nn5g28068 Nelumbo nucifera HOM05D002614 ORTHO05D002794 7.3e-06 54.7 106 31.1
AL2G40260 Arabidopsis lyrata HOM05D002614 ORTHO05D002794 9.6e-06 54.3 106 32.1
arahy.Tifrunner.gnm1.ann1.327P4X Arachis hypogaea HOM05D002614 ORTHO05D002794 9.6e-06 54.3 105 32.4
Oeu005984.1 Olea europaea HOM05D002614 ORTHO05D002794 9.6e-06 54.3 110 31.8
QL08p007888 Quercus lobata HOM05D002614 ORTHO05D002794 9.6e-06 54.3 110 29.1
SGA_v2.0_scaffold8G04387 Striga asiatica HOM05D002614 ORTHO05D002794 9.6e-06 54.3 98 33.7


User provided reference genes

Program Settings