Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.5e-104 383.3 253 100.0
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.3e-36 157.5 137 66.4
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.5e-35 154.1 137 66.4
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 1.9e-35 153.7 137 64.2
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 3.3e-35 152.9 161 57.8
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 4.3e-35 152.5 160 58.1
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 5.6e-35 152.1 139 63.3
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 7.3e-35 151.8 154 60.4
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 9.5e-35 151.4 137 63.5
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.2e-34 151.0 137 65.7
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.8e-34 149.8 137 63.5
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 3.6e-34 149.4 124 66.9
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 4.7e-34 149.1 136 65.4
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 8.0e-34 148.3 137 63.5
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 1.1e-33 147.9 137 64.2
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.1e-33 147.9 136 61.8
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 1.8e-33 147.1 166 53.0
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 2.3e-33 146.7 143 60.1
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 2.3e-33 146.7 137 61.3
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 2.3e-33 146.7 152 57.9
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 4.0e-33 146.0 141 60.3
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 4.0e-33 146.0 139 61.9
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 5.2e-33 145.6 154 58.4
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 6.8e-33 145.2 160 55.6
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 6.8e-33 145.2 137 59.9
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 6.8e-33 145.2 156 55.1
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 6.8e-33 145.2 156 55.1
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 6.8e-33 145.2 137 60.6
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 8.9e-33 144.8 137 60.6
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 8.9e-33 144.8 149 56.4
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 8.9e-33 144.8 137 60.6
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 1.2e-32 144.4 141 58.2
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.5e-32 144.1 137 60.6
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.0e-32 143.7 143 58.7
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 2.0e-32 143.7 137 61.3
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 2.0e-32 143.7 143 58.7
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.0e-32 143.7 137 59.9
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 2.0e-32 143.7 136 60.3
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 2.0e-32 143.7 137 61.3
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 2.6e-32 143.3 157 54.8
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 2.6e-32 143.3 137 59.9
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 2.6e-32 143.3 143 58.0
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 5.8e-32 142.1 139 59.7
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 5.8e-32 142.1 136 61.0
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 5.8e-32 142.1 137 59.9
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 5.8e-32 142.1 139 59.7
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 7.5e-32 141.7 137 60.6
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 1.3e-31 141.0 139 58.3
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 1.7e-31 140.6 147 56.5
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 2.2e-31 140.2 134 62.7
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 2.9e-31 139.8 143 56.6
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 3.7e-31 139.4 139 57.6
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 3.7e-31 139.4 139 59.7
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 3.7e-31 139.4 137 57.7
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 3.7e-31 139.4 137 58.4
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 3.7e-31 139.4 139 59.0
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 1.1e-30 137.9 139 59.0
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.4e-30 137.5 141 56.7
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 1.4e-30 137.5 139 58.3
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 1.9e-30 137.1 139 57.6
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.9e-30 137.1 139 58.3
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.9e-30 137.1 139 58.3
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.9e-30 137.1 138 57.2
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 2.4e-30 136.7 151 55.0
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 2.4e-30 136.7 139 59.0
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 2.4e-30 136.7 139 58.3
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.4e-30 136.7 141 56.0
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 3.2e-30 136.3 141 55.3
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 3.2e-30 136.3 141 55.3
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 3.2e-30 136.3 137 57.7
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 4.1e-30 136.0 141 55.3
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 4.1e-30 136.0 137 56.9
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 4.1e-30 136.0 139 58.3
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 5.4e-30 135.6 170 50.6
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.4e-30 135.6 145 55.9
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 5.4e-30 135.6 137 56.9
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 5.4e-30 135.6 136 58.1
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 5.4e-30 135.6 126 62.7
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 5.4e-30 135.6 126 62.7
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 5.4e-30 135.6 139 56.8
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 7.0e-30 135.2 137 56.2
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 7.0e-30 135.2 137 56.2
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 7.0e-30 135.2 141 54.6
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 7.0e-30 135.2 137 56.2
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 7.0e-30 135.2 137 56.2
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 7.0e-30 135.2 150 54.7
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 7.0e-30 135.2 137 57.7
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 7.0e-30 135.2 137 57.7
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 9.2e-30 134.8 137 56.2
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 9.2e-30 134.8 153 53.6
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 9.2e-30 134.8 137 57.7
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 1.2e-29 134.4 137 56.2
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 1.2e-29 134.4 137 56.9
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 2.0e-29 133.7 141 53.9
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 2.7e-29 133.3 137 56.2
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 2.7e-29 133.3 137 55.5
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 4.6e-29 132.5 137 54.7
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 6.0e-29 132.1 142 55.6
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 7.8e-29 131.7 136 55.9
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 1.0e-28 131.3 137 56.9
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.3e-28 131.0 141 55.3
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.3e-28 131.0 137 55.5
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 1.7e-28 130.6 157 53.5
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 2.3e-28 130.2 137 54.7
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 2.3e-28 130.2 137 54.7
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 3.0e-28 129.8 137 55.5
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 3.9e-28 129.4 138 55.1
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 5.0e-28 129.0 138 54.3
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 8.6e-28 128.3 116 63.8
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 1.1e-27 127.9 136 55.1
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 1.5e-27 127.5 137 54.7
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 2.5e-27 126.7 105 67.6
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 9.5e-27 124.8 143 53.8
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.2e-26 124.4 136 52.9
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 3.6e-26 122.9 137 51.8
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 8.1e-26 121.7 136 51.5
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 8.1e-26 121.7 136 51.5
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.8e-25 120.6 132 54.5
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.3e-25 120.2 136 51.5
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 4.0e-25 119.4 137 49.6
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 1.5e-24 117.5 137 48.9
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 2.0e-24 117.1 136 51.5
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 4.4e-24 115.9 136 48.5
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 7.5e-24 115.2 157 47.1
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 1.3e-23 114.4 137 49.6
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 3.2e-22 109.8 138 47.8
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 4.1e-22 109.4 136 45.6
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 7.1e-22 108.6 136 46.3
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 7.1e-22 108.6 136 45.6
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 1.6e-21 107.5 137 49.6
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 1.6e-21 107.5 106 59.4
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 2.1e-21 107.1 136 45.6
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 3.5e-21 106.3 127 50.4
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 3.5e-21 106.3 68 85.3
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 3.5e-21 106.3 75 74.7
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.7e-20 104.0 136 44.1
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 6.6e-20 102.1 134 45.5
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 8.6e-20 101.7 145 50.3
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 4.3e-19 99.4 153 44.4
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 1.2e-18 97.8 65 75.4
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 6.2e-18 95.5 136 44.1
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 1.5e-16 90.9 101 56.4
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 3.4e-16 89.7 134 41.0
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 8.4e-15 85.1 95 52.6
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 8.4e-15 85.1 102 50.0
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 1.0e-12 78.2 102 46.1
Ciclev10021626m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.0e-12 78.2 150 34.7
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 3.9e-12 76.3 92 52.2
FAN14G5085 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.9e-12 76.3 92 52.2
Glyma.01G101050 Glycine max HOM05D003159 ORTHO05D003780 3.3e-11 73.2 99 46.5
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 2.1e-10 70.5 48 70.8
SEGI_34284 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 2.1e-10 70.5 99 44.4
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 8.1e-10 68.6 90 51.1
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.0e-09 65.1 90 50.0
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 2.0e-08 63.9 48 68.8
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.6e-08 63.5 39 76.9
arahy.Tifrunner.gnm1.ann1.I3FRE1 Arachis hypogaea HOM05D003159 ORTHO05D003780 5.8e-08 62.4 98 44.9
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 9.9e-08 61.6 38 81.6
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 3.8e-07 59.7 57 54.4
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.8e-07 59.7 85 49.4
Nitab4.5_0011494g0040 Nicotiana tabacum HOM05D003159 ORTHO05D033874 3.2e-06 56.6 48 54.2
Rhsim05G0177800 Rhododendron simsii HOM05D003159 ORTHO05D000029 4.2e-06 56.2 31 80.6


User provided reference genes

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