Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 2.3e-205 718.8 394 100.0
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 8.3e-179 630.6 394 87.1
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 6.6e-176 620.9 394 86.3
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.8e-173 612.8 394 85.3
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 7.5e-172 607.4 394 85.3
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 6.4e-171 604.4 395 85.6
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.6e-169 599.7 394 82.7
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.3e-168 596.7 394 84.5
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.5e-167 592.4 394 83.5
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 3.3e-167 592.0 394 83.2
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 6.2e-166 587.8 394 80.2
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 6.2e-166 587.8 394 81.7
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 1.4e-165 586.6 394 81.5
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 4.0e-165 585.1 394 82.7
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 7.6e-164 580.9 394 80.7
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 9.9e-164 580.5 394 80.2
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.3e-163 580.1 394 82.2
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 1.3e-163 580.1 410 80.2
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.8e-163 578.6 394 79.4
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 4.1e-162 575.1 394 79.7
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.1e-162 574.3 394 79.4
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.1e-162 574.3 394 79.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.1e-162 574.3 394 79.7
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.1e-162 574.3 394 79.7
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 7.1e-162 574.3 394 80.5
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 9.2e-162 573.9 394 80.5
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 9.2e-162 573.9 394 80.2
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.2e-161 573.5 394 79.9
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 1.2e-161 573.5 394 79.9
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.1e-161 572.8 394 80.2
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 2.1e-161 572.8 394 80.5
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 3.5e-161 572.0 395 81.0
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.6e-161 571.6 394 79.4
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 6.0e-161 571.2 394 80.5
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 3.0e-160 568.9 394 79.9
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 3.9e-160 568.5 394 79.2
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 3.9e-160 568.5 394 79.2
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 8.6e-160 567.4 394 78.4
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.5e-159 565.8 394 78.9
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 9.6e-159 563.9 392 78.8
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.2e-158 563.5 394 78.9
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.2e-158 563.5 394 75.9
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 78.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 2.1e-158 562.8 438 73.7
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 2.8e-158 562.4 404 79.0
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 2.8e-158 562.4 394 78.7
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 6.2e-158 561.2 394 78.9
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 8.1e-158 560.8 394 76.1
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 2.4e-157 559.3 394 73.4
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 2.4e-157 559.3 394 77.4
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.7e-155 553.1 397 78.1
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 8.4e-155 550.8 394 73.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 4.2e-154 548.5 396 74.5
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 5.4e-154 548.1 417 74.8
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 3.5e-153 545.4 370 82.4
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 8.7e-152 540.8 394 69.3
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 9.6e-151 537.3 370 82.4
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.3e-150 537.0 395 75.4
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.1e-149 533.9 394 69.3
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 2.4e-149 532.7 394 76.4
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 3.1e-149 532.3 378 77.2
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 9.0e-149 530.8 394 68.8
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 9.0e-149 530.8 394 68.5
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 2.6e-148 529.3 394 68.5
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.3e-147 526.9 396 76.5
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 2.2e-147 526.2 396 76.5
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 2.9e-147 525.8 395 74.2
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 6.4e-147 524.6 394 68.0
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 6.4e-147 524.6 394 77.4
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 2.4e-146 522.7 394 76.6
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 2.4e-146 522.7 394 76.1
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.6e-145 520.0 394 75.9
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.6e-145 520.0 397 68.0
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 4.6e-145 518.5 394 75.6
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.9e-143 513.1 395 72.4
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 2.5e-143 512.7 394 68.3
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 2.8e-142 509.2 394 67.0
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 8.1e-142 507.7 394 66.5
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 8.1e-142 507.7 394 73.6
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 2.4e-141 506.1 394 75.6
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 4.0e-141 505.4 394 74.1
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 5.3e-141 505.0 394 66.2
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 5.3e-141 505.0 394 66.2
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 9.0e-141 504.2 399 66.2
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.2e-140 503.8 394 64.0
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.5e-140 503.4 426 69.0
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.3e-139 500.4 411 70.8
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 9.3e-138 494.2 405 72.3
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 3.5e-137 492.3 401 71.6
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 2.5e-135 486.1 378 66.4
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.4e-133 480.3 358 70.7
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.3e-128 463.8 389 71.5
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 8.7e-128 461.1 394 70.1
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 3.1e-125 452.6 403 61.3
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 6.5e-123 444.9 394 59.9
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 8.5e-123 444.5 372 71.5
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 4.8e-118 428.7 394 56.9
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.7e-110 403.7 346 71.7
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 4.2e-106 389.0 382 57.3
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 3.7e-102 375.9 287 76.0
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 4.1e-101 372.5 394 55.8
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.6e-100 370.5 396 52.5
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 4.4e-95 352.4 328 68.6
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.4e-93 346.7 402 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.7e-91 340.5 399 47.9
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 7.0e-85 318.5 246 64.6
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 8.9e-80 301.6 294 56.1
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.0e-75 288.1 378 46.6
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 2.8e-73 280.0 302 53.6
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 1.2e-71 274.6 393 52.9
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 4.1e-69 266.2 182 69.8
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 9.2e-69 265.0 182 69.8
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.1e-57 227.3 292 48.3
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 4.9e-54 216.1 540 31.9
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.5e-50 204.5 122 83.6
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 4.7e-49 199.5 153 71.2
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 4.0e-48 196.4 420 31.7
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 6.8e-48 195.7 165 61.8
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.3e-46 191.4 205 53.2
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 3.0e-43 180.3 125 72.8
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 2.1e-41 174.1 407 32.7
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.1e-40 171.8 395 30.9
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-38 164.1 165 50.9
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 5.1e-35 152.9 91 81.3
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 2.0e-31 141.0 123 57.7
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 8.4e-30 135.6 71 80.3
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.2e-28 131.7 112 64.3
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 2.7e-28 130.6 125 63.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 2.3e-27 127.5 71 88.7
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 3.9e-27 126.7 131 51.9
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 6.7e-27 125.9 88 70.5
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 8.7e-27 125.6 147 44.2
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 1.8e-24 117.9 150 42.7
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 5.3e-24 116.3 107 56.1
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 3.4e-23 113.6 173 54.9
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.5e-18 98.2 50 82.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.7e-14 84.7 80 61.2
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 6.5e-14 82.8 48 68.8
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 4.2e-13 80.1 107 43.0
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.3e-11 74.3 46 80.4
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 5.1e-11 73.2 51 72.5
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 8.7e-11 72.4 41 78.0
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 2.2e-09 67.8 35 91.4
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.2e-09 67.8 77 44.2
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 3.7e-09 67.0 44 75.0
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.8e-09 66.6 38 84.2
MBI14_g47597_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 1.7e-06 58.2 50 66.0


User provided reference genes

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