Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.8e-150 535.8 260 100.0
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.1e-134 483.4 255 89.8
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.3e-124 449.9 257 82.5
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 3.9e-124 448.4 256 82.0
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 2.1e-122 442.6 262 79.8
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.6e-122 441.8 256 79.7
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.4e-120 435.3 257 79.0
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 4.4e-120 434.9 257 81.7
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 3.7e-119 431.8 257 79.4
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.2e-118 428.7 256 78.5
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 4.1e-118 428.3 256 77.0
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.2e-117 426.8 256 78.1
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 6.0e-117 424.5 258 78.3
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.0e-116 423.7 256 76.6
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.0e-116 423.7 276 75.4
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.3e-116 423.3 257 77.4
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.7e-116 422.9 256 77.7
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.3e-116 422.5 254 79.1
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.1e-115 420.2 257 77.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.9e-115 419.5 256 77.3
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 2.5e-115 419.1 256 77.3
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.3e-115 418.7 257 75.9
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.3e-115 418.3 256 76.6
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 7.3e-115 417.5 267 72.7
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 9.5e-115 417.2 256 75.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 9.5e-115 417.2 255 76.9
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 3.6e-114 415.2 256 73.8
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 6.2e-114 414.5 257 75.1
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 8.1e-114 414.1 256 73.0
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.1e-114 414.1 258 76.0
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.1e-114 414.1 256 75.8
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 8.1e-114 414.1 257 75.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.8e-113 412.9 258 74.0
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 2.3e-113 412.5 258 74.0
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 5.2e-113 411.4 256 75.4
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.5e-112 409.8 256 75.4
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.5e-112 409.8 317 64.7
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 3.4e-112 408.7 258 74.4
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 4.4e-112 408.3 255 77.3
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 9.9e-112 407.1 256 75.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.4e-110 402.5 256 72.3
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 5.4e-110 401.4 256 74.6
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 7.1e-110 401.0 256 75.0
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 7.1e-110 401.0 291 67.0
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.1e-109 399.4 258 74.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 4.6e-109 398.3 256 73.4
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.7e-108 396.4 262 71.4
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 3.0e-108 395.6 256 72.7
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.0e-108 395.6 266 71.4
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 6.6e-108 394.4 262 72.5
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 6.6e-108 394.4 266 71.1
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.1e-107 393.7 256 72.3
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.1e-107 393.7 256 73.0
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.1e-107 393.7 254 70.9
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.9e-107 392.9 256 71.5
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.9e-107 392.9 259 71.4
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 4.3e-107 391.7 256 70.7
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 5.6e-107 391.3 256 69.1
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.1e-106 389.4 256 70.7
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 2.8e-106 389.0 273 69.6
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 6.2e-106 387.9 256 71.1
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.1e-105 387.1 265 69.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.4e-105 386.7 256 70.3
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.4e-105 386.0 255 71.4
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.4e-105 386.0 255 71.4
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.1e-105 385.6 255 70.2
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 4.0e-105 385.2 258 71.3
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 5.2e-105 384.8 256 69.9
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 5.2e-105 384.8 258 70.9
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 8.9e-105 384.0 255 70.2
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.2e-104 383.6 265 70.2
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 2.6e-104 382.5 262 68.7
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.4e-104 382.1 256 69.9
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 4.4e-104 381.7 256 69.5
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 7.6e-104 380.9 255 68.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.3e-103 380.2 256 69.5
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.3e-103 380.2 267 67.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.3e-103 380.2 256 69.1
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.7e-103 379.8 257 71.6
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.7e-103 379.8 256 69.9
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.7e-103 379.8 256 69.9
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 6.4e-103 377.9 256 69.9
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 6.4e-103 377.9 256 69.5
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.4e-103 377.9 252 68.7
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-102 377.1 257 71.2
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.1e-102 377.1 256 69.5
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.4e-102 376.7 262 69.5
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 1.4e-102 376.7 256 68.4
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.9e-102 376.3 256 69.5
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 3.2e-102 375.6 260 67.3
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 5.4e-102 374.8 258 68.6
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 9.3e-102 374.0 212 79.7
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 9.3e-102 374.0 256 69.1
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.1e-101 372.9 257 68.5
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.7e-101 372.5 259 68.7
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 2.7e-101 372.5 240 74.6
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 3.5e-101 372.1 256 70.7
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.0e-100 370.5 216 77.3
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.7e-100 369.8 262 66.4
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-100 369.4 257 69.3
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.3e-98 363.6 211 80.1
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 3.6e-98 362.1 259 66.8
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 8.1e-98 360.9 269 62.5
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 8.1e-98 360.9 256 64.1
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 2.4e-97 359.4 256 63.7
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 3.1e-97 359.0 256 68.8
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 5.3e-97 358.2 257 66.1
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 6.9e-97 357.8 254 66.9
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.9e-97 357.8 258 66.7
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 5.8e-96 354.8 257 65.8
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 9.9e-96 354.0 211 76.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 8.4e-95 350.9 256 67.2
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 6.0e-93 344.7 236 71.6
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 3.0e-92 342.4 195 80.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 7.4e-91 337.8 260 65.0
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 4.8e-90 335.1 271 59.4
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.2e-86 322.4 255 59.6
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 5.5e-86 321.6 195 77.4
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 4.6e-85 318.5 212 68.9
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 6.0e-85 318.2 243 64.2
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.3e-82 310.5 195 74.4
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.1e-82 309.7 231 62.3
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 2.8e-82 309.3 191 76.4
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 6.9e-81 304.7 191 72.8
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 9.0e-81 304.3 204 72.1
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 4.9e-79 298.5 230 60.9
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 4.9e-79 298.5 226 64.2
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 8.4e-79 297.7 256 57.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 5.5e-78 295.0 180 75.0
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 7.1e-78 294.7 171 81.3
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 4.6e-77 292.0 251 57.0
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 7.9e-77 291.2 310 51.0
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.7e-71 273.5 360 43.6
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 2.3e-68 263.1 262 50.4
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.8e-63 245.7 274 50.7
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.6e-61 240.4 182 62.6
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.8e-60 236.9 155 71.6
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-59 233.4 231 51.5
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 3.3e-59 232.6 216 54.6
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.1e-54 217.6 179 55.9
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 3.7e-50 202.6 180 54.4
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.1e-49 199.1 121 73.6
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.0e-47 192.2 126 69.8
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 3.2e-46 189.5 136 64.0
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.4e-44 184.1 147 60.5
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.7e-39 167.2 309 34.3
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.9e-38 163.7 250 36.0
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.7e-37 159.1 103 69.9
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.5e-35 154.1 96 72.9
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 1.4e-33 147.5 247 36.0
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.5e-32 142.9 126 54.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.3e-31 140.2 193 42.0
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 8.6e-31 138.3 171 49.1
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.2e-27 127.9 165 44.2
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.5e-27 127.5 98 61.2
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-21 107.8 75 65.3
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.7e-18 97.4 119 45.4
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.3e-18 95.1 57 70.2
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 1.1e-17 94.7 52 86.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 1.1e-17 94.7 52 86.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 9.2e-17 91.7 82 58.5
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 3.3e-14 83.2 55 70.9
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 9.2e-09 65.1 35 85.7
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 9.2e-09 65.1 63 52.4
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 1.6e-08 64.3 51 58.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 2.7e-08 63.5 44 59.1
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 2.7e-08 63.5 44 59.1
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 5.0e-07 59.3 39 61.5
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 9.5e-06 55.1 34 70.6


User provided reference genes

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