Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.5e-70 267.7 126 100.0
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-60 236.5 117 95.7
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.2e-54 216.5 117 86.3
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.2e-54 216.5 117 84.6
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 2.7e-54 215.3 117 86.3
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.0e-53 213.4 117 85.5
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.3e-53 213.0 117 85.5
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 1.3e-53 213.0 117 85.5
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 2.3e-53 212.2 117 84.6
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 3.9e-53 211.5 117 84.6
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 5.0e-53 211.1 117 85.5
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 5.0e-53 211.1 117 85.5
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 5.0e-53 211.1 117 84.6
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 5.0e-53 211.1 117 83.8
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 5.0e-53 211.1 117 85.5
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 5.0e-53 211.1 117 83.8
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 6.6e-53 210.7 117 83.8
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 8.6e-53 210.3 117 83.8
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 8.6e-53 210.3 117 83.8
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 1.1e-52 209.9 114 86.0
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.5e-52 209.5 117 83.8
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 1.5e-52 209.5 117 82.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.5e-52 209.5 117 82.1
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.5e-52 209.5 117 84.6
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.9e-52 209.1 117 85.5
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.5e-52 208.8 117 82.9
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 2.5e-52 208.8 117 82.1
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 3.3e-52 208.4 117 82.1
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 3.3e-52 208.4 117 83.8
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 4.3e-52 208.0 116 85.3
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 4.3e-52 208.0 117 81.2
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 5.6e-52 207.6 117 82.9
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 5.6e-52 207.6 117 82.9
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 5.6e-52 207.6 117 82.9
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 5.6e-52 207.6 117 82.1
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 7.3e-52 207.2 117 82.9
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 7.3e-52 207.2 117 81.2
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 7.3e-52 207.2 117 82.9
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 7.3e-52 207.2 117 82.9
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 7.3e-52 207.2 117 82.1
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 9.5e-52 206.8 117 80.3
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 9.5e-52 206.8 117 81.2
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 9.5e-52 206.8 114 86.0
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 1.2e-51 206.5 117 82.1
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.2e-51 206.5 117 82.1
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.2e-51 206.5 117 81.2
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.2e-51 206.5 117 81.2
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 1.6e-51 206.1 117 81.2
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 2.1e-51 205.7 117 80.3
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 2.1e-51 205.7 117 82.1
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 2.1e-51 205.7 117 82.9
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.1e-51 205.7 117 81.2
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 2.8e-51 205.3 117 81.2
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 2.8e-51 205.3 117 80.3
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 2.8e-51 205.3 117 80.3
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.8e-51 205.3 117 82.9
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.8e-51 205.3 117 81.2
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.8e-51 205.3 117 82.1
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.8e-51 205.3 117 81.2
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 2.8e-51 205.3 117 80.3
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 3.6e-51 204.9 117 82.1
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.6e-51 204.9 117 82.1
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.6e-51 204.9 117 82.1
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 3.6e-51 204.9 117 81.2
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 3.6e-51 204.9 117 81.2
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.6e-51 204.9 117 81.2
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 4.7e-51 204.5 117 82.1
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 4.7e-51 204.5 117 80.3
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 6.2e-51 204.1 117 79.5
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 6.2e-51 204.1 117 79.5
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.2e-51 204.1 117 82.1
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.0e-50 203.4 117 82.1
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 1.4e-50 203.0 117 80.3
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.4e-50 203.0 117 80.3
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.4e-50 203.0 117 81.2
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.8e-50 202.6 117 81.2
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.8e-50 202.6 116 81.0
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.8e-50 202.6 116 81.0
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.3e-50 202.2 117 81.2
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.1e-50 201.8 117 78.6
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 4.0e-50 201.4 117 80.3
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 8.9e-50 200.3 117 78.6
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.2e-49 199.9 118 80.5
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 2.0e-49 199.1 117 79.5
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 2.0e-49 199.1 117 79.5
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 2.6e-49 198.7 110 85.5
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 2.6e-49 198.7 117 77.8
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 3.4e-49 198.4 117 79.5
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 3.4e-49 198.4 117 80.3
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 7.5e-49 197.2 118 78.8
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 7.5e-49 197.2 118 78.8
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 9.8e-49 196.8 116 79.3
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 9.8e-49 196.8 117 77.8
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 1.7e-48 196.1 126 74.6
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 2.2e-48 195.7 118 78.0
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 2.2e-48 195.7 118 78.0
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.2e-48 195.7 117 79.5
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 3.7e-48 194.9 117 78.6
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 3.7e-48 194.9 152 65.1
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 8.3e-48 193.7 117 80.3
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 1.4e-47 193.0 117 77.8
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.4e-47 193.0 110 82.7
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 2.4e-47 192.2 117 76.9
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 2.4e-47 192.2 118 79.7
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 3.2e-47 191.8 118 79.7
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 7.0e-47 190.7 117 79.5
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 2.0e-46 189.1 117 73.5
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 2.7e-46 188.7 117 75.2
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 3.5e-46 188.3 117 75.2
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 6.0e-46 187.6 118 76.3
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 1.3e-45 186.4 117 74.4
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.3e-45 185.7 117 74.4
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 3.0e-45 185.3 118 77.1
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 3.0e-45 185.3 119 75.6
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 3.0e-45 185.3 118 77.1
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 6.6e-45 184.1 119 74.8
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 2.5e-44 182.2 119 74.8
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 3.3e-44 181.8 116 74.1
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 2.1e-43 179.1 117 73.5
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 2.8e-43 178.7 110 75.5
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.8e-42 176.0 118 72.0
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 5.2e-42 174.5 99 81.8
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 7.5e-41 170.6 114 71.9
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 2.4e-39 165.6 117 70.9
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.1e-39 164.9 86 89.5
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 4.6e-38 161.4 93 80.6
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.8e-35 152.1 121 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.5e-33 146.4 120 61.7
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 9.9e-33 143.7 89 74.2
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.3e-32 143.3 121 55.4
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.4e-31 139.8 117 60.7
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 7.1e-31 137.5 118 59.3
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 4.6e-30 134.8 80 78.8
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 3.3e-28 128.6 117 59.0
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 4.7e-27 124.8 132 49.2
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 2.2e-24 115.9 117 54.7
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.6e-22 108.2 80 60.0
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.1e-21 104.8 80 58.8
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.3e-13 79.3 49 73.5
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 5.6e-12 74.7 56 60.7
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.1e-10 70.5 89 42.7
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 5.3e-10 68.2 78 43.6
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 7.6e-09 64.3 89 40.4
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 4.6e-06 55.1 28 89.3


User provided reference genes

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