Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0022 Trochodendron aralioides HOM05D005083 ORTHO05D006310 6.3e-263 910.2 457 100.0
TAR375G0465 Trochodendron aralioides HOM05D005083 ORTHO05D006310 2.9e-207 725.3 435 87.1
Nn1g09878 Nelumbo nucifera HOM05D005083 ORTHO05D006310 1.9e-179 632.9 437 75.3
PSO832G1645 Papaver somniferum HOM05D005083 ORTHO05D006310 2.9e-175 619.0 433 74.1
PSO210G3440 Papaver somniferum HOM05D005083 ORTHO05D006310 5.5e-174 614.8 433 73.9
Thecc.05G188600 Theobroma cacao HOM05D005083 ORTHO05D006310 2.7e-173 612.5 437 74.1
Actinidia06798 Actinidia chinensis HOM05D005083 ORTHO05D006310 7.9e-173 610.9 437 74.4
GSVIVG01032444001 Vitis vinifera HOM05D005083 ORTHO05D006310 1.0e-172 610.5 437 73.9
Cfa006235 Carpinus fangiana HOM05D005083 ORTHO05D006310 1.5e-171 606.7 440 73.0
Rhsim05G0167600 Rhododendron simsii HOM05D005083 ORTHO05D006310 2.2e-170 602.8 437 73.0
CiPaw.07G085600 Carya illinoinensis HOM05D005083 ORTHO05D006310 8.2e-170 600.9 437 72.5
QL08p044788 Quercus lobata HOM05D005083 ORTHO05D006310 2.4e-169 599.4 436 72.7
CSS0048819 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 9.1e-169 597.4 437 73.0
Atru.chr12.1671 Acer truncatum HOM05D005083 ORTHO05D006310 2.0e-168 596.3 437 72.3
CSS0033222 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 3.4e-168 595.5 436 72.7
Prupe.7G036600 Prunus persica HOM05D005083 ORTHO05D006310 3.4e-168 595.5 434 71.2
CANSAT54G2676 Cannabis sativa HOM05D005083 ORTHO05D006310 1.7e-167 593.2 437 72.1
Duzib128G0478 Durio zibethinus HOM05D005083 ORTHO05D006310 5.0e-167 591.7 437 71.6
Manes.13G001400 Manihot esculenta HOM05D005083 ORTHO05D006310 1.1e-166 590.5 437 72.1
Gohir.D01G094500 Gossypium hirsutum HOM05D005083 ORTHO05D006310 3.2e-166 589.0 437 72.1
MBI18_g24480_MAGBIO Magnolia biondii HOM05D005083 ORTHO05D006310 5.5e-166 588.2 445 71.0
Gorai.002G119900 Gossypium raimondii HOM05D005083 ORTHO05D006310 7.2e-166 587.8 437 71.9
MD14G1089300 Malus domestica HOM05D005083 ORTHO05D006310 2.1e-165 586.3 436 70.4
CSS0010526 Camellia sinensis var. sinensis HOM05D005083 ORTHO05D006310 2.7e-165 585.9 435 72.9
Potri.010G180700 Populus trichocarpa HOM05D005083 ORTHO05D006310 3.6e-165 585.5 435 71.7
RcHm_v2.0_Chr3g0447481 Rosa chinensis HOM05D005083 ORTHO05D006310 8.8e-164 580.9 435 70.3
Ah.06g195270 Amaranthus hybridus HOM05D005083 ORTHO05D006310 6.3e-162 574.7 435 70.1
Dinv15379 Davidia involucrata HOM05D005083 ORTHO05D006310 6.3e-162 574.7 442 71.3
AUR62000278 Chenopodium quinoa HOM05D005083 ORTHO05D006310 4.1e-161 572.0 455 69.0
Glyma.16G082900 Glycine max HOM05D005083 ORTHO05D006310 6.9e-161 571.2 436 70.2
PGR119G1162 Punica granatum HOM05D005083 ORTHO05D006310 9.1e-161 570.9 430 69.5
Glyma.03G090100 Glycine max HOM05D005083 ORTHO05D006310 1.5e-160 570.1 434 70.3
Lalb_Chr03g0041081 Lupinus albus HOM05D005083 ORTHO05D006310 1.3e-159 567.0 436 69.0
Hund07372 Selenicereus undatus HOM05D005083 ORTHO05D006310 5.0e-159 565.1 436 69.3
VMungo0331G1409 Vigna mungo HOM05D005083 ORTHO05D006310 5.0e-159 565.1 435 69.7
FvH4_6g00120 Fragaria vesca HOM05D005083 ORTHO05D006310 6.5e-159 564.7 435 69.0
Cc09_g04250 Coffea canephora HOM05D005083 ORTHO05D006310 1.9e-158 563.1 436 67.9
Phvul.010G031700 Phaseolus vulgaris HOM05D005083 ORTHO05D006310 4.2e-158 562.0 436 69.7
CsaV3_3G003930 Cucumis sativus L. HOM05D005083 ORTHO05D006310 5.5e-158 561.6 432 68.5
Lj1g0009175 Lotus japonicus HOM05D005083 ORTHO05D006310 5.5e-158 561.6 435 69.4
Glyma.20G051200 Glycine max HOM05D005083 ORTHO05D006310 9.4e-158 560.8 436 68.8
FAN09G1831 Fragaria x ananassa HOM05D005083 ORTHO05D006310 6.1e-157 558.1 465 65.4
Ca_30805_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 1.4e-156 557.0 435 69.2
Eucgr.B01438 Eucalyptus grandis HOM05D005083 ORTHO05D006310 2.3e-156 556.2 437 67.3
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 2.3e-156 556.2 432 68.5
Migut.F01835 Erythranthe guttata HOM05D005083 ORTHO05D006310 3.9e-156 555.4 433 66.7
Nitab4.5_0001308g0170 Nicotiana tabacum HOM05D005083 ORTHO05D006310 8.8e-156 554.3 439 67.2
TPR.G28978 Trifolium pratense HOM05D005083 ORTHO05D006310 3.3e-155 552.4 437 68.2
Aqoxy3G04197 Aquilegia oxysepala HOM05D005083 ORTHO05D006310 4.8e-154 548.5 435 67.6
Medtr8g011450 Medicago truncatula HOM05D005083 ORTHO05D006310 6.3e-154 548.1 436 68.3
CAN.G809.91 Capsicum annuum HOM05D005083 ORTHO05D006310 4.1e-153 545.4 437 66.6
Lj4A702T41 Lonicera japonica HOM05D005083 ORTHO05D006310 4.1e-153 545.4 494 61.1
Psat4g206560 Pisum sativum HOM05D005083 ORTHO05D006310 4.1e-153 545.4 431 69.1
Nitab4.5_0002233g0090 Nicotiana tabacum HOM05D005083 ORTHO05D006310 5.3e-153 545.0 439 66.7
MSTRG.8186 Avicennia marina HOM05D005083 ORTHO05D006310 1.6e-152 543.5 433 66.5
THA.LOC104820850 Tarenaya hassleriana HOM05D005083 ORTHO05D006310 1.6e-152 543.5 430 67.9
Solyc02g081460.4 Solanum lycopersicum HOM05D005083 ORTHO05D006310 7.7e-152 541.2 437 65.7
ClCG10G004080 Citrullus lanatus HOM05D005083 ORTHO05D006310 2.2e-151 539.7 432 66.9
Sopen02g026100 Solanum pennellii HOM05D005083 ORTHO05D006310 2.2e-151 539.7 437 65.4
PGSC0003DMG400019714 Solanum tuberosum HOM05D005083 ORTHO05D006310 3.8e-151 538.9 437 65.4
Nitab4.5_0000842g0030 Nicotiana tabacum HOM05D005083 ORTHO05D006310 8.5e-151 537.7 439 65.6
ATR1096G007 Amborella trichopoda HOM05D005083 ORTHO05D006310 1.1e-150 537.3 449 64.1
C03p09650 Brassica napus HOM05D001138 ORTHO05D006310 6.1e-149 531.6 433 65.4
BraA03t10156Z Brassica rapa HOM05D005083 ORTHO05D006310 6.1e-149 531.6 433 65.4
A03p08290 Brassica napus HOM05D001138 ORTHO05D006310 3.0e-148 529.3 433 65.1
BcaB01g04935 Brassica carinata HOM05D005083 ORTHO05D006310 5.2e-148 528.5 433 64.9
EL10Ac4g10018 Beta vulgaris HOM05D005083 ORTHO05D006310 6.7e-148 528.1 435 67.6
AT5G17410 Arabidopsis thaliana HOM05D005083 ORTHO05D006310 7.5e-147 524.6 433 64.4
vmacro11193 Vaccinium macrocarpon HOM05D005083 ORTHO05D006310 9.7e-147 524.2 392 71.2
Carub.0006s1563 Capsella rubella HOM05D005083 ORTHO05D006310 2.2e-146 523.1 433 64.2
AL6G28480 Arabidopsis lyrata HOM05D005083 ORTHO05D006310 6.3e-146 521.5 433 64.0
Thhalv10012868m.g Eutrema salsugineum HOM05D005083 ORTHO05D006310 6.3e-146 521.5 433 64.0
BcaB01g05202 Brassica carinata HOM05D005083 ORTHO05D006310 8.2e-146 521.2 433 64.4
Os04g0501700 Oryza sativa ssp. japonica HOM05D005083 ORTHO05D006310 1.1e-145 520.8 439 63.8
TWI36G0321 Tripterygium wilfordii HOM05D005083 ORTHO05D006310 5.3e-145 518.5 404 69.3
Aa31LG11G12310 Aethionema arabicum HOM05D005083 ORTHO05D006310 7.0e-145 518.1 433 63.7
CARHR195800 Cardamine hirsuta HOM05D005083 ORTHO05D006310 1.6e-144 516.9 433 63.3
HanXRQChr14g0433021 Helianthus annuus HOM05D005083 ORTHO05D006310 5.9e-144 515.0 434 63.8
BolC3t13463H Brassica oleracea HOM05D005083 ORTHO05D006310 1.0e-143 514.2 438 63.7
Ciclev10004486m.g Citrus clementina HOM05D005083 ORTHO05D006310 2.2e-143 513.1 436 63.3
BcaB08g36773 Brassica carinata HOM05D005083 ORTHO05D006310 2.9e-143 512.7 432 63.2
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 4.2e-142 508.8 436 63.8
Zm00001eb425980 Zea mays HOM05D005083 ORTHO05D006310 3.0e-140 502.7 431 62.9
Gohir.A01G108100 Gossypium hirsutum HOM05D005083 ORTHO05D006310 4.0e-140 502.3 431 64.7
AUR62006625 Chenopodium quinoa HOM05D005083 ORTHO05D006310 9.8e-139 497.7 448 63.2
Peaxi162Scf00253g00621 Petunia axillaris HOM05D005083 ORTHO05D006310 2.2e-138 496.5 437 61.8
BolC9t58815H Brassica oleracea HOM05D005083 ORTHO05D006310 4.8e-138 495.4 441 60.8
HPP92_018347 Vanilla planifolia HOM05D005083 ORTHO05D006310 4.8e-138 495.4 445 62.2
Oeu062030.2 Olea europaea HOM05D005083 ORTHO05D006310 5.9e-136 488.4 432 61.1
arahy.Tifrunner.gnm1.ann1.1T2QZ7 Arachis hypogaea HOM05D005083 ORTHO05D006310 5.0e-135 485.3 433 62.1
MELO3C014078.2 Cucumis melo HOM05D005083 ORTHO05D006310 6.5e-135 485.0 426 62.7
arahy.Tifrunner.gnm1.ann1.PCAY5Y Arachis hypogaea HOM05D005083 ORTHO05D006310 1.1e-134 484.2 433 61.9
C09p59750 Brassica napus HOM05D005083 ORTHO05D006310 3.2e-134 482.6 416 63.0
Sp6g26810 Schrenkiella parvula HOM05D005083 ORTHO05D006310 3.1e-129 466.1 427 60.2
Lsat_1_v5_gn_2_27601 Lactuca sativa HOM05D005083 ORTHO05D006310 9.8e-123 444.5 354 67.2
CDE08G0008 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 6.8e-116 421.8 433 57.3
SEGI_29727 Sequoiadendron giganteum HOM05D005083 ORTHO05D006310 2.9e-114 416.4 458 52.0
CDE02G0214 Ceratophyllum demersum HOM05D005083 ORTHO05D006310 6.4e-114 415.2 432 56.7
Ca_23185_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 7.0e-113 411.8 435 56.1
FAN02G1711 Fragaria x ananassa HOM05D005083 ORTHO05D006310 9.2e-113 411.4 272 76.8
Sc16g0010610 Simmondsia chinensis HOM05D005083 ORTHO05D006310 1.2e-112 411.0 301 70.4
A10p22000 Brassica napus HOM05D005083 ORTHO05D006310 1.6e-109 400.6 431 54.3
SalBow6G5693 Salvia bowleyana HOM05D005083 ORTHO05D006310 3.1e-108 396.4 432 53.0
SMO361G0655 Selaginella moellendorffii HOM05D005083 ORTHO05D006310 9.2e-105 384.8 429 51.3
Haze_04595 Corylus avellana HOM05D005083 ORTHO05D006310 2.7e-104 383.3 251 78.5
SGA_v2.0_scaffold122G33218 Striga asiatica HOM05D005083 ORTHO05D006310 2.7e-104 383.3 466 48.5
unitig_22.g6621 Utricularia gibba HOM05D005083 ORTHO05D006310 3.4e-99 366.3 431 51.0
BraA10t44257Z Brassica rapa HOM05D005083 ORTHO05D006310 2.2e-98 363.6 428 50.5
Pp3c23_1190 Physcomitrium patens HOM05D005083 ORTHO05D006310 2.9e-98 363.2 443 48.1
HanXRQChr03g0062021 Helianthus annuus HOM05D005083 ORTHO05D006310 3.8e-98 362.8 313 61.7
Pp3c8_20000 Physcomitrium patens HOM05D005083 ORTHO05D006310 5.4e-97 359.0 447 48.1
Mapoly0036s0123 Marchantia polymorpha HOM05D005083 ORTHO05D006310 4.4e-91 339.3 455 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1094 Anthoceros agrestis HOM05D005083 ORTHO05D006310 7.6e-91 338.6 428 47.4
Atru.chr4.1877 Acer truncatum HOM05D005083 ORTHO05D006310 2.4e-73 280.4 192 75.0
Pp3c13_20560 Physcomitrium patens HOM05D005083 ORTHO05D006310 5.5e-73 279.3 464 40.3
Pp3c13_20568 Physcomitrium patens HOM05D005083 ORTHO05D006310 5.5e-73 279.3 464 40.3
COL.COLO4_36604 Corchorus olitorius HOM05D005083 ORTHO05D006310 5.5e-65 252.7 241 59.8
HPP92_018381 Vanilla planifolia HOM05D005083 ORTHO05D006310 1.5e-59 234.6 427 40.5
COL.COLO4_36603 Corchorus olitorius HOM05D005083 ORTHO05D006310 1.7e-50 204.5 149 73.2
MCO10G199 Micromonas commoda HOM05D005083 ORTHO05D006310 2.0e-46 191.0 362 32.9
Cpa.g.c34134 Carica papaya HOM05D005083 ORTHO05D006310 7.7e-43 179.1 156 59.6
HanXRQChr03g0062031 Helianthus annuus HOM05D005083 ORTHO05D006310 2.4e-36 157.5 138 61.6
Cpa.g.sc2180.1 Carica papaya HOM05D005083 ORTHO05D006310 1.7e-29 134.8 74 85.1
Cfa026615 Carpinus fangiana HOM05D005083 ORTHO05D006310 2.0e-27 127.9 351 31.3
PRCOL_00000469 Prasinoderma coloniale HOM05D005083 ORTHO05D006310 2.0e-22 111.3 343 27.7
CBR_g50761 Chara braunii HOM05D005083 ORTHO05D006310 6.8e-15 86.3 110 45.5
CBR_g50760 Chara braunii HOM05D005083 ORTHO05D006310 4.9e-13 80.1 142 34.5
Cre12.g525500 Chlamydomonas reinhardtii HOM05D005083 ORTHO05D006310 1.0e-10 72.4 389 23.9
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 3.8e-10 70.5 168 26.8
HanXRQChr01g0010041 Helianthus annuus HOM05D004581 ORTHO05D006211 5.0e-10 70.1 329 22.5
Hund03857 Selenicereus undatus HOM05D005083 ORTHO05D006310 4.3e-09 67.0 117 35.9
Cfa021858 Carpinus fangiana HOM05D004581 ORTHO05D006211 7.3e-09 66.2 360 22.8
TAR369G0383 Trochodendron aralioides HOM05D004581 ORTHO05D006211 9.5e-09 65.9 336 21.7
RcHm_v2.0_Chr4g0425031 Rosa chinensis HOM05D005083 ORTHO05D006310 2.8e-08 64.3 37 78.4
Solyc09g009140.3 Solanum lycopersicum HOM05D004581 ORTHO05D006211 2.3e-07 61.2 338 21.9
CAN.G824.31 Capsicum annuum HOM05D004581 ORTHO05D006211 3.1e-07 60.8 328 21.3
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 6.8e-07 59.7 182 24.7
PGSC0003DMG400002716 Solanum tuberosum HOM05D004581 ORTHO05D006211 6.8e-07 59.7 328 21.0
Sopen09g003860 Solanum pennellii HOM05D004581 ORTHO05D006211 8.9e-07 59.3 328 21.0
Peaxi162Scf00001g42030 Petunia axillaris HOM05D000880 ORTHO05D007053 1.5e-06 58.5 201 23.9
Pp3c14_20420 Physcomitrium patens HOM05D000880 ORTHO05D007053 1.5e-06 58.5 169 21.9
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 2.6e-06 57.8 178 24.7
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 3.4e-06 57.4 174 23.0
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 3.4e-06 57.4 174 23.0
Nitab4.5_0001879g0170 Nicotiana tabacum HOM05D000880 ORTHO05D007053 3.4e-06 57.4 186 22.6
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 4.4e-06 57.0 174 24.1
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 4.4e-06 57.0 174 24.1
Glyma.14G155800 Glycine max HOM05D005083 ORTHO05D006310 4.4e-06 57.0 46 63.0
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 7.5e-06 56.2 174 22.4
CAN.G472.10 Capsicum annuum HOM05D000880 ORTHO05D007053 7.5e-06 56.2 193 23.3
Nitab4.5_0002433g0080 Nicotiana tabacum HOM05D000880 ORTHO05D007053 7.5e-06 56.2 186 23.1
CARHR163650 Cardamine hirsuta HOM05D000880 ORTHO05D007053 9.8e-06 55.8 194 20.6
HanXRQChr15g0491321 Helianthus annuus HOM05D004581 ORTHO05D006211 9.8e-06 55.8 321 19.9
Lsat_1_v5_gn_9_43261 Lactuca sativa HOM05D000880 ORTHO05D007053 9.8e-06 55.8 197 22.3
PGSC0003DMG400031813 Solanum tuberosum HOM05D000880 ORTHO05D007053 9.8e-06 55.8 176 22.7


User provided reference genes

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