Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 2.6e-132 475.3 233 100.0
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.0e-131 473.4 233 99.6
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 1.7e-110 402.9 233 84.1
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 1.5e-106 389.8 242 80.6
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 5.6e-106 387.9 235 80.9
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 4.7e-105 384.8 241 80.5
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 1.8e-104 382.9 243 78.6
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 5.7e-103 377.9 239 79.1
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 7.5e-103 377.5 233 80.3
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 2.2e-102 375.9 229 81.7
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 2.9e-102 375.6 241 78.8
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 4.9e-102 374.8 237 76.8
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 1.8e-101 372.9 233 78.5
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.2e-100 370.2 235 78.3
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.2e-100 370.2 235 78.3
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.6e-100 369.8 235 78.3
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 2.7e-100 369.0 233 77.7
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 7.8e-100 367.5 242 74.8
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 5.0e-99 364.8 235 77.4
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 6.6e-99 364.4 242 76.4
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.5e-98 363.2 236 77.1
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 2.1e-97 359.4 237 75.1
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 2.1e-97 359.4 239 77.8
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.1e-97 359.4 218 78.4
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 4.7e-97 358.2 219 79.0
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.8e-96 356.3 240 75.4
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 4.0e-96 355.1 226 76.5
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 5.2e-96 354.8 242 73.1
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.4e-95 351.7 241 75.1
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 7.5e-95 350.9 239 73.6
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.7e-94 349.7 233 72.5
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 3.7e-94 348.6 235 75.7
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 6.4e-94 347.8 241 74.3
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 6.4e-94 347.8 238 73.9
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 6.4e-94 347.8 233 74.2
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.1e-93 347.1 233 70.4
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 1.1e-93 347.1 238 73.1
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 1.1e-93 347.1 236 72.9
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 2.4e-93 345.9 235 73.2
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 3.2e-93 345.5 227 74.9
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 3.2e-93 345.5 232 72.0
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.2e-93 345.5 241 73.4
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.1e-93 345.1 241 73.9
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 5.4e-93 344.7 224 75.0
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.6e-92 343.2 194 81.4
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 2.0e-92 342.8 241 70.1
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 2.0e-92 342.8 233 72.5
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 2.7e-92 342.4 242 73.6
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.5e-92 342.0 235 73.6
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 4.6e-92 341.7 214 79.4
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 4.6e-92 341.7 242 70.2
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 6.0e-92 341.3 238 71.4
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.0e-91 340.5 259 69.9
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 1.3e-91 340.1 235 72.8
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 2.3e-91 339.3 239 72.8
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.3e-91 339.3 230 72.2
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 3.0e-91 339.0 236 70.3
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 3.0e-91 339.0 225 75.6
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 6.6e-91 337.8 234 71.8
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 1.1e-90 337.0 242 70.7
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.1e-90 337.0 262 68.7
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 1.5e-90 336.7 235 71.5
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.5e-90 336.7 235 71.9
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 1.9e-90 336.3 237 71.3
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 3.3e-90 335.5 238 71.0
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 3.3e-90 335.5 233 70.8
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 4.3e-90 335.1 233 70.4
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 4.3e-90 335.1 237 71.7
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 7.3e-90 334.3 245 66.1
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 7.3e-90 334.3 216 76.4
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 9.5e-90 334.0 188 84.6
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 9.5e-90 334.0 238 70.2
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 9.5e-90 334.0 235 71.5
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 1.6e-89 333.2 223 72.2
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 2.8e-89 332.4 191 81.7
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 3.6e-89 332.0 220 73.2
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 4.7e-89 331.6 240 70.0
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 8.1e-89 330.9 239 69.5
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.1e-88 330.5 223 73.5
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 1.4e-88 330.1 222 74.3
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 8.9e-88 327.4 188 81.4
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 8.9e-88 327.4 240 69.6
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 8.9e-88 327.4 225 74.2
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 1.5e-87 326.6 188 81.4
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 2.0e-87 326.2 191 80.1
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 2.0e-87 326.2 240 69.2
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 2.6e-87 325.9 258 65.5
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 3.4e-87 325.5 240 68.8
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 3.4e-87 325.5 240 68.8
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 4.4e-87 325.1 188 80.9
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 7.5e-87 324.3 188 80.3
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.7e-86 323.2 235 69.8
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 2.9e-86 322.4 188 79.8
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.9e-86 322.4 263 65.0
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 6.4e-86 321.2 237 71.3
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 8.3e-86 320.9 235 68.9
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 4.1e-85 318.5 242 66.9
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.4e-85 318.2 239 66.9
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 2.1e-84 316.2 239 69.5
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.0e-83 313.9 219 67.6
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.3e-83 313.5 240 66.7
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 3.9e-83 312.0 235 67.2
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 6.6e-83 311.2 199 75.9
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 8.6e-83 310.8 237 67.5
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 1.9e-82 309.7 234 68.8
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 3.3e-82 308.9 216 74.1
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 2.3e-80 302.8 194 77.3
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 4.0e-80 302.0 188 74.5
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 3.4e-79 298.9 306 55.6
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 5.4e-77 291.6 186 76.9
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.1e-75 285.0 204 71.6
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.5e-74 282.7 163 83.4
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 1.6e-73 280.0 186 68.8
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 3.1e-72 275.8 186 65.1
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 8.9e-72 274.2 362 44.5
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 4.4e-71 271.9 165 77.6
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 9.3e-69 264.2 183 61.2
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 3.5e-68 262.3 188 62.2
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 8.7e-67 257.7 151 79.5
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 3.9e-59 232.3 182 58.8
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 5.8e-55 218.4 201 53.2
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 7.6e-55 218.0 133 75.9
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 5.5e-53 211.8 132 79.5
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 3.8e-46 189.1 127 66.9
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 1.1e-45 187.6 104 81.7
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 1.3e-43 180.6 104 80.8
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 6.7e-27 125.2 75 77.3
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 3.1e-24 116.3 166 41.0
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.0e-22 111.3 181 27.6
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 1.1e-21 107.8 229 29.7
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.4e-21 107.5 182 28.6
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 7.2e-21 105.1 182 25.8
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 9.4e-21 104.8 180 26.1
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 9.4e-21 104.8 63 77.8
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 9.4e-21 104.8 183 27.3
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 2.7e-20 103.2 180 28.9
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 8.0e-20 101.7 201 27.4
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.8e-19 100.5 220 26.4
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 3.0e-19 99.8 177 27.1
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 5.2e-19 99.0 181 24.3
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 2.6e-18 96.7 164 28.7
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 3.3e-18 96.3 181 28.2
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 1.7e-17 94.0 191 25.7
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 2.8e-17 93.2 202 26.2
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.8e-17 92.4 184 25.5
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 6.3e-17 92.0 192 26.0
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 5.3e-16 89.0 178 24.2
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 7.0e-16 88.6 178 24.2
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 9.1e-16 88.2 178 24.2
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.6e-15 87.4 195 22.1
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 1.6e-15 87.4 228 25.4
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 3.5e-15 86.3 178 23.6
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.5e-15 86.3 178 23.6
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 5.9e-15 85.5 178 23.0
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 7.7e-15 85.1 181 26.5
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.9e-14 83.2 178 23.6
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 5.0e-14 82.4 235 22.6
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 6.5e-14 82.0 179 23.5
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 8.5e-14 81.6 179 23.5
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 8.5e-14 81.6 178 23.0
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 8.5e-14 81.6 165 26.7
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 1.1e-13 81.3 179 22.9
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.9e-13 80.5 184 25.0
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 2.5e-13 80.1 178 22.5
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 2.5e-13 80.1 178 22.5
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.6e-12 77.4 223 22.9
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.0e-11 74.7 181 23.8
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 3.0e-11 73.2 41 78.0
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 7.5e-10 68.6 135 25.9
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 9.7e-10 68.2 40 82.5
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 6.3e-09 65.5 178 23.6


User provided reference genes

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