Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR183G0004 Trochodendron aralioides HOM05D001049 ORTHO05D005951 3.0e-123 445.3 239 100.0
TAR629G0236 Trochodendron aralioides HOM05D001049 ORTHO05D005951 1.0e-54 217.6 201 59.2
Nn3g17797 Nelumbo nucifera HOM05D001049 ORTHO05D005951 1.1e-45 187.6 201 51.2
CSS0032537 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D005951 2.5e-45 186.4 190 52.1
Lj4C194T12 Lonicera japonica HOM05D001049 ORTHO05D005951 1.2e-44 184.1 189 52.4
vmacro05566 Vaccinium macrocarpon HOM05D001049 ORTHO05D005951 4.7e-44 182.2 198 48.0
Hma1.2p1_0550F.1_g177330 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 4.0e-43 179.1 199 49.7
Solyc02g085820.3 Solanum lycopersicum HOM05D001049 ORTHO05D005951 2.6e-42 176.4 200 48.0
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 1.7e-41 173.7 193 48.7
Sopen02g030510 Solanum pennellii HOM05D001049 ORTHO05D005951 1.7e-41 173.7 200 47.5
PGSC0003DMG400012672 Solanum tuberosum HOM05D001049 ORTHO05D005951 2.2e-41 173.3 200 47.5
Peaxi162Scf00814g00241 Petunia axillaris HOM05D001049 ORTHO05D005951 2.9e-41 172.9 178 50.6
Potri.004G101100 Populus trichocarpa HOM05D001049 ORTHO05D005951 3.8e-41 172.6 197 45.2
Manes.01G109200 Manihot esculenta HOM05D001049 ORTHO05D005951 4.9e-41 172.2 199 44.7
Eucgr.J01497 Eucalyptus grandis HOM05D001049 ORTHO05D005951 6.4e-41 171.8 196 48.0
CAN.G625.5 Capsicum annuum HOM05D001049 ORTHO05D005951 8.4e-41 171.4 191 48.2
Hma1.2p1_3581F.1_g336840 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 8.4e-41 171.4 190 51.6
TWI74G0592 Tripterygium wilfordii HOM05D001049 ORTHO05D005951 8.4e-41 171.4 188 46.8
GSVIVG01031054001 Vitis vinifera HOM05D001049 ORTHO05D005951 1.1e-40 171.0 200 47.0
PSO782G4668 Papaver somniferum HOM05D001049 ORTHO05D005951 2.4e-40 169.9 194 50.5
Aqoxy3G03945 Aquilegia oxysepala HOM05D001049 ORTHO05D005951 4.2e-40 169.1 201 47.8
Lj6g0008823 Lotus japonicus HOM05D001049 ORTHO05D005951 4.2e-40 169.1 200 47.5
SGA_v2.0_scaffold114G32024 Striga asiatica HOM05D001049 ORTHO05D005951 4.2e-40 169.1 191 47.1
THA.LOC104820980 Tarenaya hassleriana HOM05D001049 ORTHO05D005951 7.1e-40 168.3 200 47.0
Migut.L00308 Erythranthe guttata HOM05D001049 ORTHO05D005951 9.3e-40 167.9 204 46.1
PSO566G0159 Papaver somniferum HOM05D001049 ORTHO05D005951 1.2e-39 167.5 194 50.0
Sc11g0008260 Simmondsia chinensis HOM05D001049 ORTHO05D005951 1.6e-39 167.2 202 44.6
arahy.Tifrunner.gnm1.ann1.NBV3FR Arachis hypogaea HOM05D001049 ORTHO05D005951 2.7e-39 166.4 201 45.8
arahy.Tifrunner.gnm1.ann1.YPBB19 Arachis hypogaea HOM05D001049 ORTHO05D005951 2.7e-39 166.4 201 45.8
Ciclev10000583m.g Citrus clementina HOM05D001049 ORTHO05D005951 3.5e-39 166.0 198 44.4
Sabra04G0079000 Salix brachista HOM05D001049 ORTHO05D005951 6.0e-39 165.2 202 45.5
Prupe.3G238300 Prunus persica HOM05D001049 ORTHO05D005951 7.8e-39 164.9 200 46.0
AL3G11560 Arabidopsis lyrata HOM05D001049 ORTHO05D005951 1.0e-38 164.5 198 42.9
AT3G02280 Arabidopsis thaliana HOM05D001049 ORTHO05D005951 1.7e-38 163.7 186 45.2
BcaB06g26057 Brassica carinata HOM05D001049 ORTHO05D005951 1.7e-38 163.7 178 47.8
CANSAT64G1724 Cannabis sativa HOM05D001049 ORTHO05D005951 2.3e-38 163.3 196 44.9
Lj1g0028233 Lotus japonicus HOM05D001049 ORTHO05D005951 2.3e-38 163.3 201 45.8
Ca_04065_v3 Cicer arietinum L. HOM05D001049 ORTHO05D005951 3.0e-38 162.9 196 43.9
SalBow5G3175 Salvia bowleyana HOM05D001049 ORTHO05D005951 3.0e-38 162.9 202 47.5
Psat3g206240 Pisum sativum HOM05D001049 ORTHO05D005951 5.1e-38 162.2 201 42.8
Thecc.09G259800 Theobroma cacao HOM05D001049 ORTHO05D005951 1.1e-37 161.0 200 43.0
Atru.chr7.1178 Acer truncatum HOM05D001049 ORTHO05D005951 2.5e-37 159.8 193 45.1
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 2.5e-37 159.8 198 43.9
VMungo1383G0137 Vigna mungo HOM05D001049 ORTHO05D005951 4.3e-37 159.1 194 43.3
Gohir.A07G116600 Gossypium hirsutum HOM05D001049 ORTHO05D005951 5.6e-37 158.7 203 42.9
Gohir.D07G121000 Gossypium hirsutum HOM05D001049 ORTHO05D005951 5.6e-37 158.7 200 43.5
Cc07_g08880 Coffea canephora HOM05D001049 ORTHO05D005951 7.3e-37 158.3 201 45.8
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 7.3e-37 158.3 199 43.2
Carub.0003s2478 Capsella rubella HOM05D001049 ORTHO05D005951 9.6e-37 157.9 185 44.3
BcaC01g04452 Brassica carinata HOM05D001049 ORTHO05D005951 1.3e-36 157.5 185 43.8
C03p40010 Brassica napus HOM05D001049 ORTHO05D005951 1.3e-36 157.5 185 43.8
HanXRQChr12g0376471 Helianthus annuus HOM05D001049 ORTHO05D005951 1.3e-36 157.5 195 46.7
MD09G1087200 Malus domestica HOM05D001049 ORTHO05D005951 1.3e-36 157.5 196 43.4
Sp3g01340 Schrenkiella parvula HOM05D001049 ORTHO05D005951 1.6e-36 157.1 185 45.4
BolC3t16266H Brassica oleracea HOM05D001049 ORTHO05D005951 2.1e-36 156.8 185 44.9
BcaC01g04542 Brassica carinata HOM05D001049 ORTHO05D005951 2.8e-36 156.4 185 44.9
MD09G1086400 Malus domestica HOM05D001049 ORTHO05D005951 2.8e-36 156.4 194 44.8
Gorai.001G130600 Gossypium raimondii HOM05D001049 ORTHO05D005951 3.6e-36 156.0 193 43.0
BraA03t12457Z Brassica rapa HOM05D001049 ORTHO05D005951 4.8e-36 155.6 185 45.4
Lsat_1_v5_gn_9_32960 Lactuca sativa HOM05D001049 ORTHO05D005951 4.8e-36 155.6 187 44.9
Duzib150G0039 Durio zibethinus HOM05D001049 ORTHO05D005951 6.2e-36 155.2 200 42.0
EL10Ac2g04590 Beta vulgaris HOM05D001049 ORTHO05D005951 8.1e-36 154.8 197 44.2
AUR62008979 Chenopodium quinoa HOM05D001049 ORTHO05D005951 8.1e-36 154.8 201 42.8
Thhalv10011322m.g Eutrema salsugineum HOM05D001049 ORTHO05D005951 8.1e-36 154.8 185 44.3
RcHm_v2.0_Chr2g0162931 Rosa chinensis HOM05D001049 ORTHO05D005951 8.1e-36 154.8 198 42.9
ECA236G0274 Erigeron canadensis HOM05D001049 ORTHO05D005951 1.1e-35 154.5 181 45.9
TPR.G9733 Trifolium pratense HOM05D001049 ORTHO05D005951 2.4e-35 153.3 201 40.3
BolC5t33015H Brassica oleracea HOM05D001049 ORTHO05D005951 3.1e-35 152.9 185 43.2
Lj1g0012839 Lotus japonicus HOM05D001049 ORTHO05D005951 6.9e-35 151.8 176 45.5
Ah.10g037600 Amaranthus hybridus HOM05D001049 ORTHO05D005951 9.0e-35 151.4 222 40.1
Medtr7g406970 Medicago truncatula HOM05D001049 ORTHO05D005951 9.0e-35 151.4 196 42.3
Medtr1g102950 Medicago truncatula HOM05D001049 ORTHO05D005951 1.5e-34 150.6 196 42.9
FAN05G1438 Fragaria x ananassa HOM05D001049 ORTHO05D005951 2.6e-34 149.8 196 40.8
Aa31LG5G12810 Aethionema arabicum HOM05D001049 ORTHO05D005951 3.4e-34 149.4 185 43.8
FAN14G1155 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.4e-34 149.4 196 41.3
Phvul.008G004800 Phaseolus vulgaris HOM05D001049 ORTHO05D005951 4.5e-34 149.1 194 42.8
FvH4_6g45220 Fragaria vesca HOM05D001049 ORTHO05D005951 5.8e-34 148.7 196 41.3
Lalb_Chr10g0091161 Lupinus albus HOM05D001049 ORTHO05D005951 5.8e-34 148.7 194 41.2
FAN02G0215 Fragaria x ananassa HOM05D001049 ORTHO05D005951 2.2e-33 146.7 194 41.8
Sed0012519 Sechium edule HOM05D001049 ORTHO05D005951 2.2e-33 146.7 190 42.1
Dinv34836 Davidia involucrata HOM05D001049 ORTHO05D005951 6.4e-33 145.2 162 49.4
Nitab4.5_0005199g0010 Nicotiana tabacum HOM05D001049 ORTHO05D005951 1.9e-32 143.7 198 42.4
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 2.4e-32 143.3 192 44.3
DCAR_029529 Daucus carota HOM05D001049 ORTHO05D005951 4.2e-32 142.5 161 49.1
Hund13726 Selenicereus undatus HOM05D001049 ORTHO05D005951 1.2e-31 141.0 215 38.6
CsaV3_4G004300 Cucumis sativus L. HOM05D001049 ORTHO05D005951 3.5e-31 139.4 197 40.1
HPP92_005481 Vanilla planifolia HOM05D001049 ORTHO05D005951 1.5e-29 134.0 182 44.5
DCAR_019602 Daucus carota HOM05D001049 ORTHO05D005951 3.3e-29 132.9 195 39.5
TAR371G1234 Trochodendron aralioides HOM05D001049 ORTHO05D005951 1.3e-28 131.0 136 55.1
BcaC05g28235 Brassica carinata HOM05D001049 ORTHO05D005951 3.7e-28 129.4 181 39.8
CiPaw.04G041100 Carya illinoinensis HOM05D001049 ORTHO05D005951 4.8e-28 129.0 91 63.7
CDE05G2905 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 6.2e-28 128.6 89 66.3
C05p42860 Brassica napus HOM05D001049 ORTHO05D005951 1.1e-27 127.9 185 38.9
CDE05G0709 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 1.2e-26 124.4 90 63.3
CDE05G2137 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 3.8e-25 119.4 151 47.7
SMO367G1106 Selaginella moellendorffii HOM05D001049 ORTHO05D005951 3.8e-25 119.4 186 38.7
COL.COLO4_25241 Corchorus olitorius HOM05D001049 ORTHO05D005951 1.1e-24 117.9 94 55.3
MD09G1086700 Malus domestica HOM05D001049 ORTHO05D005951 1.9e-24 117.1 204 35.3
FAN14G2476 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.2e-24 116.3 150 42.7
Zm00001eb154050 Zea mays HOM05D001049 ORTHO05D005951 7.1e-24 115.2 175 38.9
PGR042G0664 Punica granatum HOM05D001049 ORTHO05D005951 2.7e-23 113.2 193 37.8
Medtr7g101180 Medicago truncatula HOM05D001049 ORTHO05D005951 2.3e-22 110.2 89 56.2
Actinidia15878 Actinidia chinensis HOM05D001049 ORTHO05D005951 5.1e-22 109.0 138 49.3
AagrBONN_evm.TU.Sc2ySwM_340.441 Anthoceros agrestis HOM05D001049 ORTHO05D005951 5.1e-22 109.0 186 37.6
Pp3c9_18000 Physcomitrium patens HOM05D001049 ORTHO05D005951 5.1e-22 109.0 202 35.1
MD12G1122800 Malus domestica HOM05D001049 ORTHO05D005951 6.7e-22 108.6 97 50.5
Mapoly0012s0011 Marchantia polymorpha HOM05D001049 ORTHO05D005951 1.1e-21 107.8 194 37.1
Cre12.g551850 Chlamydomonas reinhardtii HOM05D001049 ORTHO05D005951 1.6e-20 104.0 180 38.3
Nitab4.5_0001569g0100 Nicotiana tabacum HOM05D001049 ORTHO05D005951 6.2e-20 102.1 91 53.8
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 1.8e-19 100.5 136 41.9
AUR62014524 Chenopodium quinoa HOM05D001049 ORTHO05D005951 1.7e-17 94.0 98 53.1
Lj6g0018247 Lotus japonicus HOM05D001049 ORTHO05D005951 2.2e-17 93.6 144 41.7
FvH4_7g05330 Fragaria vesca HOM05D001049 ORTHO05D019129 1.1e-16 91.3 64 60.9
MCO06G260 Micromonas commoda HOM05D001049 ORTHO05D005951 4.2e-16 89.4 176 34.1
FvH4_3g26990 Fragaria vesca HOM05D001049 ORTHO05D019129 7.4e-13 78.6 87 43.7
CAN.G852.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.3e-12 77.8 101 43.6
FAN11G1854 Fragaria x ananassa HOM05D001049 ORTHO05D019129 1.3e-12 77.8 83 45.8
MBI19_g21649_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D005951 2.8e-12 76.6 61 59.0
MBI19_g21650_MAGBIO Magnolia biondii HOM05D001049 ORTHO05D005951 4.8e-12 75.9 48 72.9
FAN18G0950 Fragaria x ananassa HOM05D001049 ORTHO05D019129 3.1e-11 73.2 85 43.5
BcaB06g26054 Brassica carinata HOM05D001049 ORTHO05D005951 2.6e-10 70.1 50 62.0
FvH4_5g10660 Fragaria vesca HOM05D001049 ORTHO05D019129 1.0e-09 68.2 44 65.9
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 1.7e-09 67.4 189 29.1
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.9e-09 66.6 46 67.4
ATR0564G081 Amborella trichopoda HOM05D001049 ORTHO05D005951 6.5e-09 65.5 55 52.7
BolC8t47349H Brassica oleracea HOM05D001049 ORTHO05D005951 6.5e-09 65.5 117 36.8
CARHR076240 Cardamine hirsuta HOM05D001049 ORTHO05D005951 8.5e-09 65.1 60 46.7
MELO3C017636.2 Cucumis melo HOM05D001049 ORTHO05D005951 1.9e-08 63.9 47 61.7
FAN01G0915 Fragaria x ananassa HOM05D001049 ORTHO05D019174 1.6e-07 60.8 43 62.8
FAN10G0721 Fragaria x ananassa HOM05D001049 ORTHO05D019174 1.6e-07 60.8 43 62.8
BcaB07g33014 Brassica carinata HOM05D001049 ORTHO05D005951 3.6e-07 59.7 44 56.8
BcaB08g34532 Brassica carinata HOM05D001049 ORTHO05D005951 4.6e-07 59.3 114 35.1
BcaB04g17099 Brassica carinata HOM05D001049 ORTHO05D005951 1.4e-06 57.8 44 56.8
FAN03G1095 Fragaria x ananassa HOM05D001049 ORTHO05D019174 1.4e-06 57.8 38 65.8
GSVIVG01014385001 Vitis vinifera HOM05D001049 ORTHO05D005951 3.0e-06 56.6 40 67.5
QL11p002540 Quercus lobata HOM05D000432 ORTHO05D000320 3.9e-06 56.2 36 69.4
COL.COLO4_25242 Corchorus olitorius HOM05D001049 ORTHO05D005951 8.8e-06 55.1 42 61.9


User provided reference genes

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