Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn1248_0010 Schrenkiella parvula HOM05D001179 ORTHO05D003685 8.7e-26 119.4 55 100.0
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.1e-20 102.4 49 95.9
BraA09t40384Z Brassica rapa HOM05D001179 ORTHO05D003685 6.0e-19 96.7 81 60.5
BolC8t50788H Brassica oleracea HOM05D001179 ORTHO05D003685 3.0e-18 94.4 81 59.3
AT3G56350 Arabidopsis thaliana HOM05D001179 ORTHO05D003685 1.5e-17 92.0 78 59.0
Thhalv10006477m.g Eutrema salsugineum HOM05D001179 ORTHO05D003685 1.9e-17 91.7 78 59.0
AL5G37680 Arabidopsis lyrata HOM05D001179 ORTHO05D003685 3.3e-17 90.9 78 57.7
Carub.0005s2313 Capsella rubella HOM05D001179 ORTHO05D003685 9.6e-17 89.4 78 57.7
CARHR166500 Cardamine hirsuta HOM05D001179 ORTHO05D003685 1.6e-16 88.6 78 56.4
Aa31LG10G11240 Aethionema arabicum HOM05D001179 ORTHO05D003685 1.2e-14 82.4 74 55.4
Nitab4.5_0002279g0090 Nicotiana tabacum HOM05D001179 ORTHO05D003685 2.6e-14 81.3 46 69.6
Lsat_1_v5_gn_1_9140 Lactuca sativa HOM05D001179 ORTHO05D003685 5.8e-14 80.1 46 71.7
PSO339G6355 Papaver somniferum HOM05D001179 ORTHO05D003685 1.3e-13 79.0 46 69.6
Lsat_1_v5_gn_1_73681 Lactuca sativa HOM05D001179 ORTHO05D003685 1.9e-12 75.1 45 71.1
MBI15_g08969_MAGBIO Magnolia biondii HOM05D001179 ORTHO05D003685 1.9e-12 75.1 74 50.0
THA.LOC104803203 Tarenaya hassleriana HOM05D001179 ORTHO05D003685 2.5e-12 74.7 72 50.0
VMungo1309G2082 Vigna mungo HOM05D001179 ORTHO05D003685 2.5e-12 74.7 74 51.4
Ca_16879_v3 Cicer arietinum L. HOM05D001179 ORTHO05D003685 3.2e-12 74.3 74 50.0
Glyma.04G221300 Glycine max HOM05D001179 ORTHO05D003685 3.2e-12 74.3 74 50.0
Glyma.06G144500 Glycine max HOM05D001179 ORTHO05D003685 3.2e-12 74.3 74 50.0
TPR.G16129 Trifolium pratense HOM05D001179 ORTHO05D003685 3.2e-12 74.3 74 50.0
BcaC07g39949 Brassica carinata HOM05D001179 ORTHO05D003685 4.2e-12 73.9 91 46.2
Cc02_g05460 Coffea canephora HOM05D001179 ORTHO05D003685 5.5e-12 73.6 72 51.4
Phvul.009G141600 Phaseolus vulgaris HOM05D001179 ORTHO05D003685 5.5e-12 73.6 74 50.0
CAN.G203.48 Capsicum annuum HOM05D001179 ORTHO05D003685 7.1e-12 73.2 72 50.0
Gohir.A05G278100 Gossypium hirsutum HOM05D001179 ORTHO05D003685 9.3e-12 72.8 74 47.3
Eucgr.J00124 Eucalyptus grandis HOM05D001179 ORTHO05D003685 1.2e-11 72.4 75 48.0
TWI53G1486 Tripterygium wilfordii HOM05D001179 ORTHO05D003685 1.2e-11 72.4 75 46.7
PGR142G2939 Punica granatum HOM05D001179 ORTHO05D003685 1.6e-11 72.0 74 48.6
Gohir.D05G279800 Gossypium hirsutum HOM05D001179 ORTHO05D003685 2.7e-11 71.2 74 45.9
Gorai.009G293300 Gossypium raimondii HOM05D001179 ORTHO05D003685 2.7e-11 71.2 74 45.9
PSO384G4860 Papaver somniferum HOM05D001179 ORTHO05D003685 2.7e-11 71.2 72 48.6
Psat5g067840 Pisum sativum HOM05D001179 ORTHO05D003685 2.7e-11 71.2 74 47.3
PGR044G2534 Punica granatum HOM05D001179 ORTHO05D003685 2.7e-11 71.2 72 48.6
DCAR_019807 Daucus carota HOM05D001179 ORTHO05D003685 3.5e-11 70.9 72 48.6
MD07G1232200 Malus domestica HOM05D001179 ORTHO05D003685 3.5e-11 70.9 74 47.3
Prupe.2G262400 Prunus persica HOM05D001179 ORTHO05D003685 3.5e-11 70.9 74 47.3
Cpa.g.sc19.67 Carica papaya HOM05D001179 ORTHO05D003685 4.6e-11 70.5 72 47.2
Ciclev10032324m.g Citrus clementina HOM05D001179 ORTHO05D003685 4.6e-11 70.5 72 48.6
DCAR_010472 Daucus carota HOM05D001179 ORTHO05D003685 4.6e-11 70.5 72 48.6
Thhalv10021449m.g Eutrema salsugineum HOM05D001179 ORTHO05D003685 4.6e-11 70.5 75 44.0
Hund15827 Selenicereus undatus HOM05D001179 ORTHO05D003685 4.6e-11 70.5 72 47.2
ECA233G6173 Erigeron canadensis HOM05D001179 ORTHO05D003685 6.1e-11 70.1 72 48.6
Migut.F00601 Erythranthe guttata HOM05D001179 ORTHO05D003685 6.1e-11 70.1 74 45.9
PSO170G0286 Papaver somniferum HOM05D001179 ORTHO05D003685 6.1e-11 70.1 72 47.2
Peaxi162Scf00739g00213 Petunia axillaris HOM05D001179 ORTHO05D003685 6.1e-11 70.1 72 48.6
unitig_736.g22963 Utricularia gibba HOM05D001179 ORTHO05D003685 6.1e-11 70.1 74 45.9
arahy.Tifrunner.gnm1.ann1.PB70UC Arachis hypogaea HOM05D001179 ORTHO05D003685 7.9e-11 69.7 74 45.9
arahy.Tifrunner.gnm1.ann1.R3C42M Arachis hypogaea HOM05D001179 ORTHO05D003685 7.9e-11 69.7 74 45.9
Cfa001218 Carpinus fangiana HOM05D001179 ORTHO05D003685 7.9e-11 69.7 74 47.3
Dinv21838 Davidia involucrata HOM05D001179 ORTHO05D003685 7.9e-11 69.7 72 45.8
FvH4_7g25730 Fragaria vesca HOM05D001179 ORTHO05D003685 7.9e-11 69.7 74 47.3
Oeu036535.1 Olea europaea HOM05D001179 ORTHO05D003685 7.9e-11 69.7 72 48.6
PGR044G0674 Punica granatum HOM05D001179 ORTHO05D003685 7.9e-11 69.7 72 47.2
Solyc06g049080.3 Solanum lycopersicum HOM05D001179 ORTHO05D003685 7.9e-11 69.7 71 49.3
Sopen06g015450 Solanum pennellii HOM05D001179 ORTHO05D003685 7.9e-11 69.7 71 49.3
TWI09G0424 Tripterygium wilfordii HOM05D001179 ORTHO05D003685 7.9e-11 69.7 72 45.8
vmacro06882 Vaccinium macrocarpon HOM05D001179 ORTHO05D003685 7.9e-11 69.7 74 44.6
HanXRQChr08g0221521 Helianthus annuus HOM05D001179 ORTHO05D003685 1.0e-10 69.3 72 48.6
PSO339G1613 Papaver somniferum HOM05D001179 ORTHO05D003685 1.0e-10 69.3 72 47.2
PSO832G1696 Papaver somniferum HOM05D001179 ORTHO05D003685 1.0e-10 69.3 72 48.6
Sp3g09250 Schrenkiella parvula HOM05D001179 ORTHO05D003685 1.0e-10 69.3 75 42.7
Actinidia07798 Actinidia chinensis HOM05D001179 ORTHO05D003685 1.3e-10 68.9 71 47.9
AT3G10920 Arabidopsis thaliana HOM05D001179 ORTHO05D003685 1.3e-10 68.9 74 43.2
MSTRG.8897 Avicennia marina HOM05D001179 ORTHO05D003685 1.3e-10 68.9 72 47.2
BcaC09g48138 Brassica carinata HOM05D001179 ORTHO05D003685 1.3e-10 68.9 75 42.7
BolC1t05344H Brassica oleracea HOM05D001179 ORTHO05D003685 1.3e-10 68.9 75 42.7
BraA01t04214Z Brassica rapa HOM05D001179 ORTHO05D003685 1.3e-10 68.9 75 42.7
CANSAT54G3050 Cannabis sativa HOM05D001179 ORTHO05D003685 1.3e-10 68.9 74 45.9
Eucgr.G03132 Eucalyptus grandis HOM05D001179 ORTHO05D003685 1.3e-10 68.9 72 45.8
FAN01G2567 Fragaria x ananassa HOM05D001179 ORTHO05D003685 1.3e-10 68.9 74 45.9
HanXRQChr14g0460121 Helianthus annuus HOM05D001179 ORTHO05D003685 1.3e-10 68.9 72 47.2
Lj8C56G4 Lonicera japonica HOM05D001179 ORTHO05D003685 1.3e-10 68.9 72 47.2
Lalb_Chr08g0239041 Lupinus albus HOM05D001179 ORTHO05D003685 1.3e-10 68.9 74 45.9
Lalb_Chr11g0067941 Lupinus albus HOM05D001179 ORTHO05D003685 1.3e-10 68.9 72 47.2
RcHm_v2.0_Chr1g0371971 Rosa chinensis HOM05D001179 ORTHO05D003685 1.3e-10 68.9 74 45.9
TAR623G0689 Trochodendron aralioides HOM05D001179 ORTHO05D003685 1.3e-10 68.9 72 45.8
Aa31LG3G3910 Aethionema arabicum HOM05D001179 ORTHO05D003685 1.8e-10 68.6 72 44.4
BcaB04g21165 Brassica carinata HOM05D001179 ORTHO05D003685 1.8e-10 68.6 75 42.7
BcaC05g29410 Brassica carinata HOM05D001179 ORTHO05D003685 1.8e-10 68.6 75 42.7
A05p38320 Brassica napus HOM05D001179 ORTHO05D003685 1.8e-10 68.6 75 42.7
C05p57140 Brassica napus HOM05D001179 ORTHO05D003685 1.8e-10 68.6 75 42.7
BolC5t34377H Brassica oleracea HOM05D001179 ORTHO05D003685 1.8e-10 68.6 75 42.7
BraA05t22623Z Brassica rapa HOM05D001179 ORTHO05D003685 1.8e-10 68.6 75 42.7
Carub.0003s1019 Capsella rubella HOM05D001179 ORTHO05D003685 1.8e-10 68.6 72 45.8
Haze_17344 Corylus avellana HOM05D001179 ORTHO05D003685 1.8e-10 68.6 74 45.9
Nitab4.5_0001743g0010 Nicotiana tabacum HOM05D001179 ORTHO05D003685 1.8e-10 68.6 72 45.8
Nitab4.5_0004599g0060 Nicotiana tabacum HOM05D001179 ORTHO05D003685 1.8e-10 68.6 72 45.8
AL3G22460 Arabidopsis lyrata HOM05D001179 ORTHO05D003685 2.3e-10 68.2 72 44.4
CANSAT56G1791 Cannabis sativa HOM05D001179 ORTHO05D003685 2.3e-10 68.2 74 47.3
CiPaw.01G305300 Carya illinoinensis HOM05D001179 ORTHO05D003685 2.3e-10 68.2 75 45.3
Duzib106G1949 Durio zibethinus HOM05D001179 ORTHO05D003685 2.3e-10 68.2 72 44.4
Duzib114G0343 Durio zibethinus HOM05D001179 ORTHO05D003685 2.3e-10 68.2 74 43.2
Lj1g0015160 Lotus japonicus HOM05D001179 ORTHO05D003685 2.3e-10 68.2 74 44.6
Medtr3g094250 Medicago truncatula HOM05D001179 ORTHO05D003685 2.3e-10 68.2 71 47.9
Peaxi162Scf00167g01325 Petunia axillaris HOM05D001179 ORTHO05D003685 2.3e-10 68.2 72 44.4
GSVIVG01024575001 Vitis vinifera HOM05D001179 ORTHO05D003685 2.3e-10 68.2 74 44.6
MSTRG.8372 Avicennia marina HOM05D001179 ORTHO05D003685 3.0e-10 67.8 71 46.5
CANSAT56G3903 Cannabis sativa HOM05D001179 ORTHO05D003685 3.0e-10 67.8 74 45.9
ECA238G4669 Erigeron canadensis HOM05D001179 ORTHO05D003685 3.0e-10 67.8 72 47.2
Lsat_1_v5_gn_8_13581 Lactuca sativa HOM05D001179 ORTHO05D003685 3.0e-10 67.8 72 45.8
PSO017G6218 Papaver somniferum HOM05D001179 ORTHO05D003685 3.0e-10 67.8 72 45.8
QL01p025028 Quercus lobata HOM05D001179 ORTHO05D003685 3.0e-10 67.8 74 44.6
Thecc.10G182900 Theobroma cacao HOM05D001179 ORTHO05D003685 3.0e-10 67.8 72 44.4
GSVIVG01032675001 Vitis vinifera HOM05D001179 ORTHO05D003685 3.0e-10 67.8 72 44.4
BcaB06g25656 Brassica carinata HOM05D001179 ORTHO05D003685 3.9e-10 67.4 72 44.4
BcaB06g25661 Brassica carinata HOM05D001179 ORTHO05D003685 3.9e-10 67.4 72 44.4
Haze_24459 Corylus avellana HOM05D001179 ORTHO05D003685 3.9e-10 67.4 74 45.9
MD01G1164700 Malus domestica HOM05D001179 ORTHO05D003685 3.9e-10 67.4 74 44.6
PGSC0003DMG400016647 Solanum tuberosum HOM05D001179 ORTHO05D003685 3.9e-10 67.4 71 47.9
CARHR085500 Cardamine hirsuta HOM05D001179 ORTHO05D003685 5.1e-10 67.0 75 41.3
Nitab4.5_0000375g0200 Nicotiana tabacum HOM05D001179 ORTHO05D003685 5.1e-10 67.0 72 44.4
Cfa011821 Carpinus fangiana HOM05D001179 ORTHO05D003685 8.7e-10 66.2 74 44.6
ClCG03G000100 Citrullus lanatus HOM05D001179 ORTHO05D003685 8.7e-10 66.2 74 45.9
Aqoxy2G00698 Aquilegia oxysepala HOM05D001179 ORTHO05D003685 1.1e-09 65.9 72 44.4
CsaV3_1G004740 Cucumis sativus L. HOM05D001179 ORTHO05D003685 1.1e-09 65.9 74 45.9
Gohir.A10G178700 Gossypium hirsutum HOM05D001179 ORTHO05D003685 1.1e-09 65.9 72 43.1
Gohir.D10G185400 Gossypium hirsutum HOM05D001179 ORTHO05D003685 1.1e-09 65.9 72 43.1
Gorai.011G207900 Gossypium raimondii HOM05D001179 ORTHO05D003685 1.1e-09 65.9 72 43.1
Sc10g0002960 Simmondsia chinensis HOM05D001179 ORTHO05D003685 1.5e-09 65.5 72 43.1
THA.LOC104826834 Tarenaya hassleriana HOM05D001179 ORTHO05D003685 1.5e-09 65.5 72 41.7
CDE06G1288 Ceratophyllum demersum HOM05D001179 ORTHO05D003685 1.9e-09 65.1 72 45.8
CDE07G1965 Ceratophyllum demersum HOM05D001179 ORTHO05D003685 1.9e-09 65.1 72 45.8
EL10Ac2g02625 Beta vulgaris HOM05D001179 ORTHO05D003685 2.5e-09 64.7 72 44.4
COL.COLO4_19443 Corchorus olitorius HOM05D001179 ORTHO05D003685 2.5e-09 64.7 71 43.7
MSTRG.27266 Avicennia marina HOM05D001179 ORTHO05D003685 3.3e-09 64.3 71 43.7
Manes.07G140500 Manihot esculenta HOM05D001179 ORTHO05D003685 3.3e-09 64.3 72 43.1
QL08p064627 Quercus lobata HOM05D001179 ORTHO05D003685 3.3e-09 64.3 72 44.4
Ah.12g064220 Amaranthus hybridus HOM05D001179 ORTHO05D003685 4.3e-09 63.9 72 43.1
Rhsim03G0151400 Rhododendron simsii HOM05D001179 ORTHO05D003685 4.3e-09 63.9 72 41.7
Atru.chr12.168 Acer truncatum HOM05D001179 ORTHO05D003685 5.7e-09 63.5 67 47.8
Prupe.6G042300 Prunus persica HOM05D001179 ORTHO05D003685 7.4e-09 63.2 72 43.1
Lsat_1_v5_gn_3_110340 Lactuca sativa HOM05D001179 ORTHO05D003685 9.7e-09 62.8 63 49.2
Rhsim09G0185000 Rhododendron simsii HOM05D001179 ORTHO05D003685 9.7e-09 62.8 71 43.7
HPP92_002074 Vanilla planifolia HOM05D001179 ORTHO05D003685 9.7e-09 62.8 71 43.7
HPP92_002085 Vanilla planifolia HOM05D001179 ORTHO05D003685 9.7e-09 62.8 71 43.7
Lsat_1_v5_gn_3_61900 Lactuca sativa HOM05D001179 ORTHO05D003685 1.6e-08 62.0 71 43.7
Sed0008431 Sechium edule HOM05D001179 ORTHO05D003685 1.6e-08 62.0 72 44.4
Migut.D00823 Erythranthe guttata HOM05D001179 ORTHO05D003685 3.7e-08 60.8 76 39.5
SGA_v2.0_scaffold247G44849 Striga asiatica HOM05D001179 ORTHO05D003685 3.7e-08 60.8 82 39.0
CAN.G607.9 Capsicum annuum HOM05D001179 ORTHO05D003685 4.8e-08 60.5 67 44.8
Cpa.g.sc2.301 Carica papaya HOM05D001179 ORTHO05D003685 6.3e-08 60.1 71 40.8
AUR62030627 Chenopodium quinoa HOM05D001179 ORTHO05D003685 6.3e-08 60.1 72 38.9
CiPaw.14G051200 Carya illinoinensis HOM05D001179 ORTHO05D003685 1.1e-07 59.3 72 41.7
Manes.10G000300 Manihot esculenta HOM05D001179 ORTHO05D003685 1.1e-07 59.3 72 38.9
Os05g0323900 Oryza sativa ssp. japonica HOM05D001179 ORTHO05D003685 1.1e-07 59.3 71 40.8
Zm00001eb285090 Zea mays HOM05D001179 ORTHO05D003685 1.1e-07 59.3 71 40.8
Zm00001eb347200 Zea mays HOM05D001179 ORTHO05D003685 1.1e-07 59.3 71 40.8
Mapoly0005s0177 Marchantia polymorpha HOM05D001179 ORTHO05D003685 1.4e-07 58.9 71 40.8
BcaB06g25657 Brassica carinata HOM05D001179 ORTHO05D003685 3.1e-07 57.8 65 46.2
THA.LOC104823172 Tarenaya hassleriana HOM05D001179 ORTHO05D003685 3.1e-07 57.8 53 50.9
RcHm_v2.0_Chr5g0072711 Rosa chinensis HOM05D001179 ORTHO05D003685 4.1e-07 57.4 72 38.9
RcHm_v2.0_Chr5g0072741 Rosa chinensis HOM05D001179 ORTHO05D003685 4.1e-07 57.4 72 38.9
Pp3c19_10240 Physcomitrium patens HOM05D001179 ORTHO05D003685 1.2e-06 55.8 70 41.4
AUR62024917 Chenopodium quinoa HOM05D001179 ORTHO05D003685 2.0e-06 55.1 69 37.7
SMO116G0440 Selaginella moellendorffii HOM05D001179 ORTHO05D003685 2.0e-06 55.1 79 38.0
SalBow3G0545 Salvia bowleyana HOM05D001179 ORTHO05D003685 3.4e-06 54.3 50 50.0
SalBow3G4262 Salvia bowleyana HOM05D001179 ORTHO05D003685 3.4e-06 54.3 50 50.0
Oeu044161.2 Olea europaea HOM05D001179 ORTHO05D003685 5.9e-06 53.5 28 71.4


User provided reference genes

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