Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn1180_0010 Schrenkiella parvula HOM05D000512 ORTHO05D001326 9.7e-36 152.9 75 100.0
BolC6t39203H Brassica oleracea HOM05D000512 ORTHO05D001326 4.4e-20 100.9 70 77.1
BraA07t31061Z Brassica rapa HOM05D000512 ORTHO05D001326 5.7e-20 100.5 70 74.3
Thhalv10018362m.g Eutrema salsugineum HOM05D000512 ORTHO05D001326 2.2e-19 98.6 71 69.0
BcaC08g46203 Brassica carinata HOM05D000512 ORTHO05D001326 2.8e-19 98.2 70 75.7
C06p42240 Brassica napus HOM05D000512 ORTHO05D001326 2.8e-19 98.2 70 75.7
A07p34320 Brassica napus HOM05D000512 ORTHO05D001326 1.1e-18 96.3 70 72.9
BcaB03g15164 Brassica carinata HOM05D000512 ORTHO05D001326 1.0e-16 89.7 70 71.4
AT1G67770 Arabidopsis thaliana HOM05D000512 ORTHO05D001326 2.8e-11 71.6 69 56.5
AL2G26490 Arabidopsis lyrata HOM05D000512 ORTHO05D001326 1.1e-10 69.7 75 54.7
Carub.0002s1420 Capsella rubella HOM05D000512 ORTHO05D001326 9.1e-10 66.6 45 66.7
Lsat_1_v5_gn_3_29940 Lactuca sativa HOM05D000512 ORTHO05D001326 9.1e-10 66.6 70 51.4
Os01g0907900 Oryza sativa ssp. japonica HOM05D000512 ORTHO05D001326 2.0e-09 65.5 70 44.3
Aa31LG4G12310 Aethionema arabicum HOM05D000512 ORTHO05D001326 3.5e-09 64.7 64 60.9
MELO3C011917.2 Cucumis melo HOM05D000512 ORTHO05D001326 3.5e-09 64.7 69 50.7
Dinv11033 Davidia involucrata HOM05D000512 ORTHO05D001326 5.9e-09 63.9 45 66.7
Medtr3g086380 Medicago truncatula HOM05D000512 ORTHO05D001326 5.9e-09 63.9 70 48.6
Lsat_1_v5_gn_4_3800 Lactuca sativa HOM05D000512 ORTHO05D001326 7.7e-09 63.5 44 68.2
ECA246G5328 Erigeron canadensis HOM05D000512 ORTHO05D001326 1.0e-08 63.2 45 64.4
Solyc05g013930.2 Solanum lycopersicum HOM05D000512 ORTHO05D001326 1.0e-08 63.2 45 66.7
Sopen05g008860 Solanum pennellii HOM05D000512 ORTHO05D001326 1.0e-08 63.2 45 66.7
ClCG05G026100 Citrullus lanatus HOM05D000512 ORTHO05D001326 1.3e-08 62.8 44 63.6
Nitab4.5_0000041g0080 Nicotiana tabacum HOM05D000512 ORTHO05D001326 1.3e-08 62.8 45 64.4
Nitab4.5_0005933g0010 Nicotiana tabacum HOM05D000512 ORTHO05D001326 1.3e-08 62.8 45 64.4
Dinv14752 Davidia involucrata HOM05D000512 ORTHO05D001326 1.7e-08 62.4 45 66.7
Sp2g15330 Schrenkiella parvula HOM05D000512 ORTHO05D001326 1.7e-08 62.4 79 46.8
CANSAT01G2330 Cannabis sativa HOM05D000512 ORTHO05D001326 2.2e-08 62.0 44 61.4
CsaV3_5G030750 Cucumis sativus L. HOM05D000512 ORTHO05D001326 2.2e-08 62.0 69 49.3
HanXRQChr12g0385741 Helianthus annuus HOM05D000512 ORTHO05D001326 2.2e-08 62.0 45 60.0
Psat5g092560 Pisum sativum HOM05D000512 ORTHO05D001326 2.2e-08 62.0 69 47.8
TAR629G0984 Trochodendron aralioides HOM05D000512 ORTHO05D001326 2.2e-08 62.0 67 46.3
AL5G14840 Arabidopsis lyrata HOM05D000512 ORTHO05D001326 3.8e-08 61.2 51 56.9
arahy.Tifrunner.gnm1.ann1.CIG4ZW Arachis hypogaea HOM05D000512 ORTHO05D001326 3.8e-08 61.2 45 62.2
arahy.Tifrunner.gnm1.ann1.WTB4CB Arachis hypogaea HOM05D000512 ORTHO05D001326 3.8e-08 61.2 45 62.2
CSS0012494 Camellia sinensis var. sinensis HOM05D000512 ORTHO05D001326 3.8e-08 61.2 73 47.9
CiPaw.05G177000 Carya illinoinensis HOM05D000512 ORTHO05D001326 3.8e-08 61.2 45 62.2
MD16G1105800 Malus domestica HOM05D000512 ORTHO05D001326 3.8e-08 61.2 45 62.2
Phvul.001G256300 Phaseolus vulgaris HOM05D000512 ORTHO05D001326 3.8e-08 61.2 45 62.2
unitig_8.g2919 Utricularia gibba HOM05D000512 ORTHO05D001326 3.8e-08 61.2 74 47.3
Ciclev10030971m.g Citrus clementina HOM05D000512 ORTHO05D001326 5.0e-08 60.8 45 62.2
Thhalv10005263m.g Eutrema salsugineum HOM05D000512 ORTHO05D001326 5.0e-08 60.8 78 44.9
Glyma.18G012600 Glycine max HOM05D000512 ORTHO05D001326 5.0e-08 60.8 45 62.2
Nn3g16631 Nelumbo nucifera HOM05D000512 ORTHO05D001326 5.0e-08 60.8 44 63.6
Potri.010G051100 Populus trichocarpa HOM05D000512 ORTHO05D001326 5.0e-08 60.8 79 43.0
Sc04g0009730 Simmondsia chinensis HOM05D000512 ORTHO05D001326 5.0e-08 60.8 74 40.5
THA.LOC104825543 Tarenaya hassleriana HOM05D000512 ORTHO05D001326 5.0e-08 60.8 64 50.0
TWI18G1085 Tripterygium wilfordii HOM05D000512 ORTHO05D001326 5.0e-08 60.8 45 60.0
ECA234G4423 Erigeron canadensis HOM05D000512 ORTHO05D001326 6.5e-08 60.5 45 57.8
MD13G1105600 Malus domestica HOM05D000512 ORTHO05D001326 6.5e-08 60.5 59 52.5
SalBow2G2176 Salvia bowleyana HOM05D000512 ORTHO05D001326 6.5e-08 60.5 44 56.8
SGA_v2.0_scaffold4274G54461 Striga asiatica HOM05D000512 ORTHO05D001326 6.5e-08 60.5 46 54.3
TPR.G5661 Trifolium pratense HOM05D000512 ORTHO05D001326 6.5e-08 60.5 60 48.3
Aa31LG2G6220 Aethionema arabicum HOM05D000512 ORTHO05D001326 8.5e-08 60.1 82 43.9
AT3G26120 Arabidopsis thaliana HOM05D000512 ORTHO05D001326 8.5e-08 60.1 48 56.2
BcaC06g33926 Brassica carinata HOM05D000512 ORTHO05D001326 8.5e-08 60.1 47 57.4
A06p42220 Brassica napus HOM05D000512 ORTHO05D001326 8.5e-08 60.1 47 57.4
C07p35140 Brassica napus HOM05D000512 ORTHO05D001326 8.5e-08 60.1 47 57.4
BolC7t44042H Brassica oleracea HOM05D000512 ORTHO05D001326 8.5e-08 60.1 47 57.4
COL.COLO4_23528 Corchorus olitorius HOM05D000512 ORTHO05D001326 8.5e-08 60.1 53 50.9
Glyma.11G244300 Glycine max HOM05D000512 ORTHO05D001326 8.5e-08 60.1 45 60.0
Gohir.A03G132100 Gossypium hirsutum HOM05D000512 ORTHO05D001326 8.5e-08 60.1 45 60.0
Gohir.D02G156200 Gossypium hirsutum HOM05D000512 ORTHO05D001326 8.5e-08 60.1 45 60.0
PGR119G0269 Punica granatum HOM05D000512 ORTHO05D001326 8.5e-08 60.1 45 60.0
Sabra10G0018800 Salix brachista HOM05D000512 ORTHO05D001326 8.5e-08 60.1 80 43.8
Sc14g0008850 Simmondsia chinensis HOM05D000512 ORTHO05D001326 8.5e-08 60.1 61 50.8
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 8.5e-08 60.1 74 41.9
BcaC06g31089 Brassica carinata HOM05D000512 ORTHO05D001326 1.1e-07 59.7 80 43.8
CAN.G43.31 Capsicum annuum HOM05D000512 ORTHO05D001326 1.1e-07 59.7 45 62.2
Cpa.g.sc33.76 Carica papaya HOM05D000512 ORTHO05D001326 1.1e-07 59.7 77 42.9
Haze_12291 Corylus avellana HOM05D000512 ORTHO05D001326 1.1e-07 59.7 45 62.2
arahy.Tifrunner.gnm1.ann1.M3M4BF Arachis hypogaea HOM05D000512 ORTHO05D001326 1.5e-07 59.3 70 47.1
Cfa009258 Carpinus fangiana HOM05D000512 ORTHO05D001326 1.5e-07 59.3 45 60.0
Lj6C816T14 Lonicera japonica HOM05D000512 ORTHO05D001326 1.5e-07 59.3 45 62.2
Manes.12G019700 Manihot esculenta HOM05D000512 ORTHO05D001326 1.5e-07 59.3 45 62.2
QL03p056180 Quercus lobata HOM05D000512 ORTHO05D001326 1.5e-07 59.3 64 46.9
TAR371G0442 Trochodendron aralioides HOM05D000512 ORTHO05D001326 1.5e-07 59.3 45 57.8
Actinidia01369 Actinidia chinensis HOM05D000512 ORTHO05D001326 1.9e-07 58.9 45 60.0
Actinidia08117 Actinidia chinensis HOM05D000512 ORTHO05D001326 1.9e-07 58.9 45 60.0
DCAR_007037 Daucus carota HOM05D000512 ORTHO05D001326 1.9e-07 58.9 44 59.1
Duzib248G0953 Durio zibethinus HOM05D000512 ORTHO05D001326 1.9e-07 58.9 45 55.6
Gorai.005G175000 Gossypium raimondii HOM05D000512 ORTHO05D001326 1.9e-07 58.9 45 57.8
Nn4g22520 Nelumbo nucifera HOM05D000512 ORTHO05D001326 1.9e-07 58.9 74 43.2
Thecc.02G266800 Theobroma cacao HOM05D000512 ORTHO05D001326 1.9e-07 58.9 45 57.8
Aqoxy3G01372 Aquilegia oxysepala HOM05D000512 ORTHO05D001326 2.5e-07 58.5 69 43.5
Ca_25130_v3 Cicer arietinum L. HOM05D000512 ORTHO05D001326 2.5e-07 58.5 59 50.8
Lj3A1062T99 Lonicera japonica HOM05D000512 ORTHO05D001326 2.5e-07 58.5 59 52.5
arahy.Tifrunner.gnm1.ann1.2260LN Arachis hypogaea HOM05D000512 ORTHO05D001326 3.2e-07 58.2 70 45.7
THA.LOC104825677 Tarenaya hassleriana HOM05D000512 ORTHO05D001326 3.2e-07 58.2 44 59.1
BcaC03g17318 Brassica carinata HOM05D000512 ORTHO05D001326 4.2e-07 57.8 47 53.2
A02p34300 Brassica napus HOM05D000512 ORTHO05D001326 4.2e-07 57.8 47 53.2
C02p52660 Brassica napus HOM05D000512 ORTHO05D001326 4.2e-07 57.8 47 53.2
BolC2t11341H Brassica oleracea HOM05D000512 ORTHO05D001326 4.2e-07 57.8 47 53.2
BraA02t08445Z Brassica rapa HOM05D000512 ORTHO05D001326 4.2e-07 57.8 47 53.2
BcaB07g30236 Brassica carinata HOM05D000512 ORTHO05D001326 5.5e-07 57.4 47 53.2
Cc11_g16130 Coffea canephora HOM05D000512 ORTHO05D001326 5.5e-07 57.4 44 56.8
Lj4g0015291 Lotus japonicus HOM05D000512 ORTHO05D001326 5.5e-07 57.4 44 59.1
MBI10_g18563_MAGBIO Magnolia biondii HOM05D000512 ORTHO05D001326 5.5e-07 57.4 44 56.8
DCAR_031170 Daucus carota HOM05D000512 ORTHO05D001326 7.2e-07 57.0 45 53.3
HanXRQChr06g0174891 Helianthus annuus HOM05D000512 ORTHO05D001326 7.2e-07 57.0 45 57.8
RcHm_v2.0_Chr4g0432441 Rosa chinensis HOM05D000512 ORTHO05D001326 7.2e-07 57.0 44 54.5
Duzib251G0077 Durio zibethinus HOM05D000512 ORTHO05D001326 9.4e-07 56.6 62 50.0
Potri.008G183000 Populus trichocarpa HOM05D000512 ORTHO05D001326 9.4e-07 56.6 45 55.6
Sed0012446 Sechium edule HOM05D000512 ORTHO05D001326 9.4e-07 56.6 44 59.1
Duzib268G0324 Durio zibethinus HOM05D000512 ORTHO05D001326 1.2e-06 56.2 45 55.6
Manes.13G020000 Manihot esculenta HOM05D000512 ORTHO05D001326 1.2e-06 56.2 45 60.0
Oeu004658.1 Olea europaea HOM05D000512 ORTHO05D001326 1.2e-06 56.2 45 55.6
GSVIVG01000583001 Vitis vinifera HOM05D000512 ORTHO05D001326 1.2e-06 56.2 45 60.0
CARHR147130 Cardamine hirsuta HOM05D000512 ORTHO05D001326 1.6e-06 55.8 79 41.8
Lalb_Chr23g0277721 Lupinus albus HOM05D000512 ORTHO05D001326 1.6e-06 55.8 46 58.7
Hund25409 Selenicereus undatus HOM05D000512 ORTHO05D001326 1.6e-06 55.8 74 47.3
Zm00001eb144140 Zea mays HOM05D000512 ORTHO05D001326 1.6e-06 55.8 59 47.5
Atru.chr11.2186 Acer truncatum HOM05D000512 ORTHO05D001326 2.1e-06 55.5 46 60.9
Ah.02g130360 Amaranthus hybridus HOM05D000512 ORTHO05D001326 2.7e-06 55.1 45 55.6
EL10As2g23183 Beta vulgaris HOM05D000512 ORTHO05D001326 2.7e-06 55.1 45 55.6
Carub.0005s0403 Capsella rubella HOM05D000512 ORTHO05D001326 2.7e-06 55.1 46 54.3
Gohir.A12G145900 Gossypium hirsutum HOM05D000512 ORTHO05D001326 3.6e-06 54.7 46 50.0
Gohir.D12G150500 Gossypium hirsutum HOM05D000512 ORTHO05D001326 3.6e-06 54.7 46 50.0
Gorai.008G162000 Gossypium raimondii HOM05D000512 ORTHO05D001326 3.6e-06 54.7 46 50.0
HanXRQChr17g0540121 Helianthus annuus HOM05D000512 ORTHO05D001326 4.7e-06 54.3 69 43.5
HPP92_012750 Vanilla planifolia HOM05D000512 ORTHO05D001326 4.7e-06 54.3 44 52.3
PSO063G7356 Papaver somniferum HOM05D000512 ORTHO05D001326 6.1e-06 53.9 45 53.3


User provided reference genes

Program Settings