Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0124_0020 Schrenkiella parvula HOM05D007347 ORTHO05D009296 3.9e-111 406.4 343 100.0
SpUn0185_0030 Schrenkiella parvula HOM05D007347 ORTHO05D009296 3.9e-111 406.4 343 100.0
Thhalv10028323m.g Eutrema salsugineum HOM05D007347 ORTHO05D009296 1.6e-101 374.4 343 91.8
Carub.0007s3713 Capsella rubella HOM05D007347 ORTHO05D009296 1.0e-95 355.1 343 91.5
AL7G51690 Arabidopsis lyrata HOM05D007347 ORTHO05D009296 5.1e-95 352.8 343 89.2
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 4.3e-94 349.7 343 91.0
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 4.8e-93 346.3 343 90.4
BcaC02g09666 Brassica carinata HOM05D007347 ORTHO05D009296 6.2e-93 345.9 343 89.2
C04p45350 Brassica napus HOM05D007347 ORTHO05D009296 6.2e-93 345.9 343 89.2
BolC4t26117H Brassica oleracea HOM05D007347 ORTHO05D009296 6.2e-93 345.9 343 89.2
AT5G38730 Arabidopsis thaliana HOM05D007347 ORTHO05D009296 4.0e-92 343.2 343 86.6
BcaB06g27240 Brassica carinata HOM05D007347 ORTHO05D009296 3.4e-91 340.1 343 90.1
Aa31LG9G16920 Aethionema arabicum HOM05D007347 ORTHO05D009296 1.1e-78 298.5 183 80.3
THA.LOC104805542 Tarenaya hassleriana HOM05D007347 ORTHO05D009296 2.1e-77 294.3 190 75.3
Cc07_g04830 Coffea canephora HOM05D007347 ORTHO05D009296 6.7e-47 193.0 190 50.5
Migut.H00560 Erythranthe guttata HOM05D007347 ORTHO05D009296 6.7e-47 193.0 190 52.1
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 1.1e-46 192.2 190 52.1
SGA_v2.0_scaffold204G41666 Striga asiatica HOM05D007347 ORTHO05D009296 1.1e-46 192.2 189 51.9
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 5.7e-46 189.9 189 54.0
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 1.3e-45 188.7 191 51.8
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 2.2e-45 188.0 189 52.9
MSTRG.24902 Avicennia marina HOM05D007347 ORTHO05D009296 1.4e-44 185.3 188 52.1
Cpa.g.sc16.131 Carica papaya HOM05D007347 ORTHO05D009296 1.4e-44 185.3 178 53.4
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 2.4e-44 184.5 186 51.6
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 3.1e-44 184.1 189 49.7
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 4.1e-44 183.7 191 51.8
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 4.1e-44 183.7 178 53.9
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 5.3e-44 183.3 189 50.3
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 5.3e-44 183.3 189 50.3
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 9.1e-44 182.6 179 52.0
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 3.5e-43 180.6 186 52.7
TWI15G0869 Tripterygium wilfordii HOM05D007347 ORTHO05D009296 3.5e-43 180.6 188 53.2
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 5.9e-43 179.9 181 54.7
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 5.9e-43 179.9 181 54.7
Potri.017G108600 Populus trichocarpa HOM05D007347 ORTHO05D009296 7.7e-43 179.5 187 50.8
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 1.0e-42 179.1 181 54.1
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 1.3e-42 178.7 191 49.2
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.3e-42 178.7 181 54.1
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 1.3e-42 178.7 181 53.6
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 1.7e-42 178.3 190 51.1
Peaxi162Scf00004g02628 Petunia axillaris HOM05D007347 ORTHO05D009296 1.7e-42 178.3 178 50.6
TPR.G30433 Trifolium pratense HOM05D007347 ORTHO05D009296 2.2e-42 177.9 174 51.7
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 2.9e-42 177.6 178 51.1
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 6.5e-42 176.4 178 50.6
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 8.5e-42 176.0 181 53.0
Sopen04g021380 Solanum pennellii HOM05D007347 ORTHO05D009296 8.5e-42 176.0 190 48.9
Duzib138G0808 Durio zibethinus HOM05D007347 ORTHO05D009296 1.1e-41 175.6 181 53.0
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 1.1e-41 175.6 181 53.6
Solyc04g050550.3 Solanum lycopersicum HOM05D007347 ORTHO05D009296 1.5e-41 175.3 190 48.9
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 1.9e-41 174.9 189 47.1
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 4.2e-41 173.7 190 50.0
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 4.2e-41 173.7 192 47.4
Thecc.04G145700 Theobroma cacao HOM05D007347 ORTHO05D009296 4.2e-41 173.7 189 51.9
Gohir.D02G204900 Gossypium hirsutum HOM05D007347 ORTHO05D009296 5.5e-41 173.3 183 53.6
Gorai.005G232200 Gossypium raimondii HOM05D007347 ORTHO05D009296 5.5e-41 173.3 182 53.8
Glyma.15G236300 Glycine max HOM05D007347 ORTHO05D009296 9.4e-41 172.6 190 51.6
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 9.4e-41 172.6 174 53.4
CAN.G71.18 Capsicum annuum HOM05D007347 ORTHO05D009296 4.7e-40 170.2 188 47.9
Glyma.13G197700 Glycine max HOM05D007347 ORTHO05D009296 1.8e-39 168.3 175 53.1
Gohir.A03G183300 Gossypium hirsutum HOM05D007347 ORTHO05D009296 1.8e-39 168.3 182 52.2
Hma1.2p1_1364F.1_g278380 Hydrangea macrophylla HOM05D007347 ORTHO05D009296 1.8e-39 168.3 186 48.9
Sabra17G0091200 Salix brachista HOM05D007347 ORTHO05D009296 4.0e-39 167.2 184 47.8
Lalb_Chr19g0132391 Lupinus albus HOM05D007347 ORTHO05D009296 5.2e-39 166.8 168 53.6
Cfa007995 Carpinus fangiana HOM05D007347 ORTHO05D009296 2.6e-38 164.5 171 52.0
VMungo1127G1072 Vigna mungo HOM05D007347 ORTHO05D009296 7.5e-38 162.9 165 54.5
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 7.5e-38 162.9 171 50.9
Haze_14081 Corylus avellana HOM05D007347 ORTHO05D009296 3.7e-37 160.6 173 51.4
Ciclev10011342m.g Citrus clementina HOM05D007347 ORTHO05D009296 4.8e-37 160.2 187 45.5
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 1.1e-36 159.1 179 46.4
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 1.8e-36 158.3 189 43.4
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 1.8e-36 158.3 189 43.4
PSO782G5207 Papaver somniferum HOM05D007347 ORTHO05D009296 4.1e-36 157.1 180 43.3
Eucgr.I02100 Eucalyptus grandis HOM05D007347 ORTHO05D009296 5.3e-36 156.8 171 50.9
AUR62019500 Chenopodium quinoa HOM05D007347 ORTHO05D009296 2.0e-35 154.8 191 45.0
Phvul.011G207300 Phaseolus vulgaris HOM05D007347 ORTHO05D009296 2.0e-35 154.8 177 49.2
Sc10g0001490 Simmondsia chinensis HOM05D007347 ORTHO05D009296 5.9e-35 153.3 190 43.2
Nn3g18549 Nelumbo nucifera HOM05D007347 ORTHO05D009296 7.7e-35 152.9 184 45.1
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 1.3e-34 152.1 190 42.6
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 1.7e-34 151.8 188 43.6
Manes.18G103700 Manihot esculenta HOM05D007347 ORTHO05D009296 1.1e-33 149.1 169 47.3
SHI25538 Sapria himalayana HOM05D002460 ORTHO05D002716 1.1e-33 149.1 169 49.7
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 4.2e-33 147.1 190 41.6
Aqoxy3G04330 Aquilegia oxysepala HOM05D007347 ORTHO05D009296 1.2e-30 139.0 180 41.7
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 9.8e-30 136.0 171 44.4
ECA238G4434 Erigeron canadensis HOM05D007347 ORTHO05D009296 8.3e-29 132.9 105 62.9
FAN28G0832 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.0e-27 128.3 160 46.2
COL.COLO4_23655 Corchorus olitorius HOM05D007347 ORTHO05D009296 4.5e-27 127.1 105 61.9
Atru.chr10.1870 Acer truncatum HOM05D007347 ORTHO05D009296 4.9e-21 107.1 189 36.0
AUR62036136 Chenopodium quinoa HOM05D007347 ORTHO05D009296 9.2e-20 102.8 105 50.5
MBI03_g13436_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 4.5e-19 100.5 101 49.5
Ca_23964_v3 Cicer arietinum L. HOM05D007347 ORTHO05D009296 7.8e-19 99.8 85 58.8
CARHR283670 Cardamine hirsuta HOM05D007347 ORTHO05D009296 3.0e-10 71.2 37 86.5
Zm00001eb259350 Zea mays HOM05D007347 ORTHO05D009296 5.6e-09 67.0 163 33.1
CDE05G1387 Ceratophyllum demersum HOM05D007347 ORTHO05D009296 3.6e-08 64.3 49 51.0
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 4.0e-07 60.8 182 24.7
Lalb_Chr10g0104281 Lupinus albus HOM05D007545 ORTHO05D009579 6.8e-07 60.1 166 27.7
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 6.8e-07 60.1 138 29.7
MELO3C032020.2 Cucumis melo HOM05D007545 ORTHO05D009579 2.6e-06 58.2 129 27.9
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 2.6e-06 58.2 177 26.0
SEGI_14415 Sequoiadendron giganteum HOM05D006931 ORTHO05D009509 2.6e-06 58.2 177 25.4
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.4e-06 57.8 131 31.3
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 3.4e-06 57.8 177 27.1
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 3.4e-06 57.8 155 28.4
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 4.4e-06 57.4 189 24.3
Eucgr.E04115 Eucalyptus grandis HOM05D007956 ORTHO05D010152 5.8e-06 57.0 184 23.4
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 7.5e-06 56.6 131 30.5
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 9.8e-06 56.2 177 26.6
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 9.8e-06 56.2 140 29.3


User provided reference genes

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