Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.5e-268 929.9 871 100.0
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 1.5e-268 929.9 871 100.0
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 6.8e-157 558.9 622 81.0
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 7.8e-137 492.3 630 73.5
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.2e-105 388.7 635 64.4
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.2e-100 372.1 630 63.3
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 2.6e-100 370.9 631 63.7
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 1.7e-99 368.2 631 57.1
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 7.2e-98 362.8 631 52.5
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 9.3e-98 362.5 635 56.2
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 3.9e-88 330.5 636 59.6
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 2.0e-87 328.2 630 60.8
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 3.2e-82 310.8 344 53.5
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.1e-79 302.4 630 62.7
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 2.6e-79 301.2 633 60.8
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 2.1e-73 281.6 630 58.6
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 1.3e-70 272.3 633 58.1
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.1e-61 242.7 630 53.8
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 4.1e-61 240.7 256 49.6
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 3.8e-59 234.2 628 56.8
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 8.5e-59 233.0 343 39.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 9.8e-47 193.0 326 38.3
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 2.2e-46 191.8 286 38.1
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.4e-45 189.1 276 39.1
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.9e-44 183.7 231 46.3
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 1.3e-43 182.6 306 35.0
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 1.7e-43 182.2 264 39.4
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 3.3e-42 177.9 282 39.0
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 2.6e-39 168.3 336 33.6
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.7e-38 165.6 342 32.7
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 7.8e-36 156.8 185 42.7
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.0e-35 156.4 332 32.5
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 8.6e-35 153.3 306 34.0
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 7.3e-34 150.2 189 45.0
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.3e-32 145.2 317 30.9
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 5.2e-32 144.1 331 32.3
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 1.2e-31 142.9 207 38.2
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 7.5e-31 140.2 256 34.8
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 2.4e-29 135.2 249 34.1
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 6.0e-28 130.6 182 42.9
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 1.7e-27 129.0 132 50.0
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 3.0e-27 128.3 219 37.0
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 3.0e-27 128.3 132 45.5
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 3.3e-26 124.8 217 36.4
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.3e-26 124.8 185 36.8
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 7.3e-26 123.6 214 36.0
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 7.3e-26 123.6 200 36.0
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 9.5e-26 123.2 187 40.6
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.6e-25 122.5 298 26.8
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 2.8e-25 121.7 210 37.1
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 3.6e-25 121.3 164 37.8
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 8.1e-25 120.2 204 33.8
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 1.4e-24 119.4 201 35.3
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 1.4e-24 119.4 339 27.4
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 2.3e-24 118.6 409 43.5
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 4.0e-24 117.9 163 36.8
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 6.8e-24 117.1 118 52.5
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 8.9e-24 116.7 144 43.8
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 1.2e-23 116.3 149 38.9
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.5e-23 115.9 197 33.0
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 2.0e-23 115.5 182 34.6
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 3.4e-23 114.8 316 26.9
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 7.6e-23 113.6 207 27.5
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.7e-22 112.5 218 31.2
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 2.9e-22 111.7 195 37.9
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 3.8e-22 111.3 210 34.8
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 3.8e-22 111.3 220 33.6
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 6.4e-22 110.5 194 33.5
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.4e-21 109.4 283 25.4
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.4e-21 109.4 203 32.5
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 7.1e-21 107.1 248 27.4
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 3.5e-20 104.8 189 31.7
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 6.0e-20 104.0 124 38.7
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 6.0e-20 104.0 205 34.1
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 6.0e-20 104.0 166 33.7
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 7.8e-20 103.6 164 36.6
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 7.8e-20 103.6 220 29.5
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 1.3e-19 102.8 165 37.0
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 1.7e-19 102.4 290 29.7
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.7e-19 102.4 184 33.2
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 3.0e-19 101.7 325 27.1
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 3.3e-18 98.2 165 32.7
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 7.3e-18 97.1 93 54.8
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 7.3e-18 97.1 138 37.7
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 1.6e-17 95.9 122 37.7
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 6.2e-17 94.0 175 30.3
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 1.4e-16 92.8 132 42.4
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 3.1e-16 91.7 137 36.5
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 3.1e-16 91.7 256 26.2
BcaNung04645 Brassica carinata HOM05D006287 ORTHO05D008192 5.2e-16 90.9 124 43.5
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 5.2e-16 90.9 133 36.1
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 5.2e-16 90.9 185 31.9
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 6.9e-16 90.5 108 48.1
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 6.9e-16 90.5 247 30.4
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 2.0e-15 89.0 132 35.6
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 4.4e-15 87.8 206 28.2
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.9e-14 85.1 114 38.6
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 2.9e-14 85.1 133 34.6
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 2.9e-14 85.1 161 31.1
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 4.9e-14 84.3 160 30.0
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 6.4e-14 84.0 210 30.5
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.1e-13 83.2 111 35.1
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 2.1e-12 79.0 139 36.0
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.1e-12 79.0 139 36.0
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 2.7e-12 78.6 281 25.3
CiPaw.09G092100 Carya illinoinensis HOM05D002890 ORTHO05D009847 2.7e-12 78.6 224 26.8
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 2.7e-12 78.6 224 24.6
BcaC05g25040 Brassica carinata HOM05D002890 ORTHO05D009847 4.6e-12 77.8 281 25.3
A06p08270 Brassica napus HOM05D002890 ORTHO05D009847 4.6e-12 77.8 290 24.1
BraA06t24026Z Brassica rapa HOM05D002890 ORTHO05D009847 1.7e-11 75.9 290 23.8
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.3e-11 75.5 104 33.7
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 5.1e-11 74.3 256 23.4
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 8.7e-11 73.6 167 29.3
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 1.1e-10 73.2 287 23.7
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 7.3e-10 70.5 205 24.4
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 1.6e-09 69.3 110 36.4
C04p48640 Brassica napus HOM05D034764 ORTHO05D039157 2.1e-09 68.9 42 71.4
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 2.1e-09 68.9 211 24.6
PGR042G0565 Punica granatum HOM05D002890 ORTHO05D009847 2.1e-09 68.9 222 25.7
arahy.Tifrunner.gnm1.ann1.GQ8ZCN Arachis hypogaea HOM05D002890 ORTHO05D009847 2.8e-09 68.6 219 25.6
BolC5t29723H Brassica oleracea HOM05D002890 ORTHO05D009847 3.6e-09 68.2 290 23.4
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 6.2e-09 67.4 336 22.6
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.1e-08 66.6 139 27.3
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.1e-08 66.6 224 25.0
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.4e-08 66.2 225 24.9
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 1.4e-08 66.2 233 24.9
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 1.8e-08 65.9 205 23.9
Migut.A00317 Erythranthe guttata HOM05D006287 ORTHO05D008192 2.4e-08 65.5 92 41.3
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 2.4e-08 65.5 289 23.9
ECA238G4369 Erigeron canadensis HOM05D000891 ORTHO05D000761 5.3e-08 64.3 132 33.3
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 9.0e-08 63.5 267 23.2
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 9.0e-08 63.5 207 24.6
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 1.2e-07 63.2 211 25.1
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 2.0e-07 62.4 203 27.1
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 2.0e-07 62.4 134 28.4
AUR62040041 Chenopodium quinoa HOM05D007145 ORTHO05D008952 2.6e-07 62.0 133 30.1
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 2.6e-07 62.0 215 24.2
FAN03G2556 Fragaria x ananassa HOM05D006556 ORTHO05D008146 4.5e-07 61.2 172 26.2
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 4.5e-07 61.2 174 25.3
Zm00001eb227290 Zea mays HOM05D000891 ORTHO05D000761 4.5e-07 61.2 180 25.0
CiPaw.09G023000 Carya illinoinensis HOM05D006596 ORTHO05D008497 5.8e-07 60.8 179 21.2
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 5.8e-07 60.8 254 23.2
Nitab4.5_0003498g0100 Nicotiana tabacum HOM05D006287 ORTHO05D008192 5.8e-07 60.8 82 37.8
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 7.6e-07 60.5 174 25.3
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 7.6e-07 60.5 224 23.7
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 9.9e-07 60.1 174 25.3
CiPaw.10G011000 Carya illinoinensis HOM05D000001 ORTHO05D000003 9.9e-07 60.1 177 24.9
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.3e-06 59.7 174 25.3
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 1.3e-06 59.7 174 25.3
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.3e-06 59.7 204 25.5
BcaNung04646 Brassica carinata HOM05D006287 ORTHO05D008192 1.7e-06 59.3 49 55.1
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 1.7e-06 59.3 212 27.4
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 2.2e-06 58.9 270 22.2
QL04p052170 Quercus lobata HOM05D000001 ORTHO05D000003 2.2e-06 58.9 164 25.6
Actinidia13220 Actinidia chinensis HOM05D003039 ORTHO05D008410 2.9e-06 58.5 262 24.0
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 2.9e-06 58.5 273 20.9
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 2.9e-06 58.5 196 23.5
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 2.9e-06 58.5 246 19.9
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 3.8e-06 58.2 209 25.8
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 3.8e-06 58.2 209 25.8
Eucgr.J03058 Eucalyptus grandis HOM05D000891 ORTHO05D000761 3.8e-06 58.2 148 24.3
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 3.8e-06 58.2 194 25.8
CSS0019745 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 4.9e-06 57.8 140 29.3
Ciclev10026953m.g Citrus clementina HOM05D006556 ORTHO05D008146 4.9e-06 57.8 158 25.9
FAN06G0419 Fragaria x ananassa HOM05D006556 ORTHO05D008146 4.9e-06 57.8 152 27.0
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 4.9e-06 57.8 324 20.7
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 4.9e-06 57.8 204 24.5
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 4.9e-06 57.8 200 26.0
Solyc02g062910.3 Solanum lycopersicum HOM05D000891 ORTHO05D000761 4.9e-06 57.8 133 26.3
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 4.9e-06 57.8 164 26.8
TAR628G0602 Trochodendron aralioides HOM05D006556 ORTHO05D008146 4.9e-06 57.8 155 26.5
GSVIVG01021583001 Vitis vinifera HOM05D006556 ORTHO05D008146 4.9e-06 57.8 130 30.0
Zm00001eb092390 Zea mays HOM05D006287 ORTHO05D000003 4.9e-06 57.8 82 41.5
CBR_g19478 Chara braunii HOM05D006877 ORTHO05D000003 6.4e-06 57.4 136 27.2
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 6.4e-06 57.4 196 24.5
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 6.4e-06 57.4 174 25.3
Zm00001eb310610 Zea mays HOM05D000181 ORTHO05D000003 6.4e-06 57.4 82 40.2
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 8.4e-06 57.0 196 24.0
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 8.4e-06 57.0 224 25.0
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 8.4e-06 57.0 181 24.3
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 8.4e-06 57.0 174 23.6


User provided reference genes

Program Settings