Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g36070 Schrenkiella parvula HOM05D006521 ORTHO05D008087 7.1e-237 823.5 416 100.0
AL7G12040 Arabidopsis lyrata HOM05D006521 ORTHO05D008087 9.6e-210 733.4 422 89.1
AT4G39820 Arabidopsis thaliana HOM05D006521 ORTHO05D008087 2.4e-208 728.8 416 89.2
CARHR246880 Cardamine hirsuta HOM05D006521 ORTHO05D008087 4.0e-208 728.0 416 89.4
Carub.0007s0173 Capsella rubella HOM05D006521 ORTHO05D008087 2.6e-207 725.3 420 88.8
Thhalv10025314m.g Eutrema salsugineum HOM05D006521 ORTHO05D008087 7.6e-207 723.8 420 87.6
Aa31LG6G15450 Aethionema arabicum HOM05D006521 ORTHO05D008087 1.4e-192 676.4 422 82.2
C03p78340 Brassica napus HOM05D006521 ORTHO05D008087 1.4e-187 659.8 416 80.8
BolC3t20094H Brassica oleracea HOM05D006521 ORTHO05D008087 3.9e-187 658.3 416 80.5
A08p23330 Brassica napus HOM05D006521 ORTHO05D008087 1.1e-181 640.2 417 79.1
BraA08t34287Z Brassica rapa HOM05D006521 ORTHO05D008087 1.1e-181 640.2 417 79.1
THA.LOC104807700 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 3.7e-177 625.2 416 75.5
THA.LOC104824871 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 3.8e-174 615.1 411 75.7
BcaNung05326 Brassica carinata HOM05D006521 ORTHO05D008087 2.3e-150 536.2 357 76.5
Cpa.g.sc20.228 Carica papaya HOM05D006521 ORTHO05D008087 2.2e-145 519.6 378 65.6
Duzib147G0857 Durio zibethinus HOM05D006521 ORTHO05D008087 3.9e-142 508.8 363 66.4
Thecc.01G106200 Theobroma cacao HOM05D006521 ORTHO05D008087 4.3e-141 505.4 363 64.7
ClCG01G018970 Citrullus lanatus HOM05D006521 ORTHO05D008087 1.0e-139 500.7 358 65.4
MELO3C007776.2 Cucumis melo HOM05D006521 ORTHO05D008087 5.2e-139 498.4 358 65.4
Gorai.007G061700 Gossypium raimondii HOM05D006521 ORTHO05D008087 1.2e-138 497.3 363 64.2
Lalb_Chr11g0075241 Lupinus albus HOM05D006521 ORTHO05D008087 2.6e-138 496.1 348 65.8
Duzib264G0874 Durio zibethinus HOM05D006521 ORTHO05D008087 5.8e-138 495.0 351 65.2
Ca_16545_v3 Cicer arietinum L. HOM05D006521 ORTHO05D008087 7.5e-138 494.6 345 67.0
CsaV3_6G045650 Cucumis sativus L. HOM05D006521 ORTHO05D008087 2.9e-137 492.7 368 64.1
Ciclev10025891m.g Citrus clementina HOM05D006521 ORTHO05D008087 2.0e-135 486.5 365 64.9
Medtr3g087760 Medicago truncatula HOM05D006521 ORTHO05D008087 2.0e-135 486.5 345 65.8
CANSAT01G1058 Cannabis sativa HOM05D006521 ORTHO05D008087 2.7e-135 486.1 382 61.8
Atru.chr4.229 Acer truncatum HOM05D006521 ORTHO05D008087 3.5e-135 485.7 371 64.7
Manes.12G138400 Manihot esculenta HOM05D006521 ORTHO05D008087 1.3e-134 483.8 361 65.7
Sed0002886 Sechium edule HOM05D006521 ORTHO05D008087 1.7e-134 483.4 372 62.4
Glyma.18G019200 Glycine max HOM05D006521 ORTHO05D008087 2.3e-134 483.0 346 65.6
arahy.Tifrunner.gnm1.ann1.2NAN3W Arachis hypogaea HOM05D006521 ORTHO05D008087 3.0e-134 482.6 351 64.7
arahy.Tifrunner.gnm1.ann1.IK9JFE Arachis hypogaea HOM05D006521 ORTHO05D008087 3.0e-134 482.6 351 64.7
Gorai.008G103700 Gossypium raimondii HOM05D006521 ORTHO05D008087 1.1e-133 480.7 363 63.4
Phvul.001G250400 Phaseolus vulgaris HOM05D006521 ORTHO05D008087 1.5e-133 480.3 347 66.3
VMungo1383G3636 Vigna mungo HOM05D006521 ORTHO05D008087 2.5e-133 479.6 362 63.8
Lj6g0010661 Lotus japonicus HOM05D006521 ORTHO05D008087 4.3e-133 478.8 342 64.9
TWI74G1358 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 4.3e-133 478.8 358 63.7
TAR376G0467 Trochodendron aralioides HOM05D006521 ORTHO05D008087 1.2e-132 477.2 372 62.1
Glyma.11G238100 Glycine max HOM05D006521 ORTHO05D008087 6.2e-132 474.9 347 65.4
Sed0013283 Sechium edule HOM05D006521 ORTHO05D008087 1.1e-131 474.2 359 61.0
TWI77G0511 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 3.1e-131 472.6 359 63.8
Psat5g088760 Pisum sativum HOM05D006521 ORTHO05D008087 4.0e-131 472.2 370 61.1
Prupe.3G102100 Prunus persica HOM05D006521 ORTHO05D008087 2.6e-130 469.5 351 65.0
TPR.G22881 Trifolium pratense HOM05D006521 ORTHO05D008087 4.9e-129 465.3 373 60.9
Eucgr.I00394 Eucalyptus grandis HOM05D006521 ORTHO05D008087 3.2e-128 462.6 356 62.4
RcHm_v2.0_Chr2g0115391 Rosa chinensis HOM05D006521 ORTHO05D008087 1.2e-127 460.7 362 61.9
FAN19G2752 Fragaria x ananassa HOM05D006521 ORTHO05D008087 1.3e-126 457.2 363 62.0
Dinv00937 Davidia involucrata HOM05D006521 ORTHO05D008087 2.3e-126 456.4 370 61.4
FvH4_1g21530 Fragaria vesca HOM05D006521 ORTHO05D008087 2.3e-126 456.4 363 62.0
Dinv16313 Davidia involucrata HOM05D006521 ORTHO05D008087 3.9e-126 455.7 384 59.1
FAN23G2501 Fragaria x ananassa HOM05D006521 ORTHO05D008087 5.6e-125 451.8 363 61.4
Hma1.2p1_0011F.1_g007170 Hydrangea macrophylla HOM05D006521 ORTHO05D008087 7.3e-125 451.4 354 62.7
QL06p050323 Quercus lobata HOM05D006521 ORTHO05D008087 2.1e-124 449.9 359 61.8
Aqoxy5G01962 Aquilegia oxysepala HOM05D006521 ORTHO05D008087 2.8e-124 449.5 376 58.5
FAN28G0591 Fragaria x ananassa HOM05D006521 ORTHO05D008087 3.6e-124 449.1 363 60.6
PSO447G0171 Papaver somniferum HOM05D006521 ORTHO05D008087 1.1e-123 447.6 349 59.6
Potri.005G079300 Populus trichocarpa HOM05D006521 ORTHO05D008087 1.8e-123 446.8 349 61.9
PGR004G2411 Punica granatum HOM05D006521 ORTHO05D008087 1.8e-123 446.8 350 61.1
PSO210G2459 Papaver somniferum HOM05D006521 ORTHO05D008087 7.6e-122 441.4 349 58.7
Sc16g0005450 Simmondsia chinensis HOM05D006521 ORTHO05D008087 7.8e-119 431.4 346 60.4
Cc07_g15580 Coffea canephora HOM05D006521 ORTHO05D008087 5.1e-118 428.7 389 57.6
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 5.6e-117 425.2 367 58.0
HanXRQChr16g0527921 Helianthus annuus HOM05D006521 ORTHO05D008087 1.2e-116 424.1 350 60.0
CiPaw.03G138700 Carya illinoinensis HOM05D006521 ORTHO05D008087 1.6e-116 423.7 359 57.7
SHI11594 Sapria himalayana HOM05D006521 ORTHO05D008087 2.1e-116 423.3 375 55.2
Haze_24978 Corylus avellana HOM05D006521 ORTHO05D008087 3.6e-116 422.5 349 59.3
SGA_v2.0_scaffold2G01323 Striga asiatica HOM05D006521 ORTHO05D008087 6.2e-116 421.8 401 55.9
C01p00850 Brassica napus HOM05D006521 ORTHO05D008087 8.1e-116 421.4 400 60.0
AUR62003763 Chenopodium quinoa HOM05D006521 ORTHO05D008087 1.1e-115 421.0 360 58.1
AUR62002034 Chenopodium quinoa HOM05D006521 ORTHO05D008087 5.2e-115 418.7 363 57.3
Ah.02g122760 Amaranthus hybridus HOM05D006521 ORTHO05D008087 4.4e-114 415.6 353 57.2
Rhsim10G0157900 Rhododendron simsii HOM05D006521 ORTHO05D008087 9.9e-114 414.5 384 53.6
ECA234G2647 Erigeron canadensis HOM05D006521 ORTHO05D008087 1.9e-112 410.2 352 58.0
Lsat_1_v5_gn_4_21220 Lactuca sativa HOM05D006521 ORTHO05D008087 1.9e-112 410.2 386 55.7
Nitab4.5_0000715g0180 Nicotiana tabacum HOM05D006521 ORTHO05D008087 3.2e-112 409.5 363 57.6
SalBow3G0008 Salvia bowleyana HOM05D006521 ORTHO05D008087 5.4e-112 408.7 382 55.0
Oeu053565.1 Olea europaea HOM05D006521 ORTHO05D008087 7.1e-112 408.3 361 57.1
Migut.H02388 Erythranthe guttata HOM05D006521 ORTHO05D008087 1.6e-111 407.1 351 57.8
PGSC0003DMG400021832 Solanum tuberosum HOM05D006521 ORTHO05D008087 6.0e-111 405.2 374 55.3
Ah.02g120360 Amaranthus hybridus HOM05D006521 ORTHO05D008087 7.8e-111 404.8 354 56.2
Sopen05g030360 Solanum pennellii HOM05D006521 ORTHO05D008087 1.0e-110 404.4 350 58.0
Solyc05g051840.1 Solanum lycopersicum HOM05D006521 ORTHO05D008087 3.0e-110 402.9 380 54.7
Lsat_1_v5_gn_2_67800 Lactuca sativa HOM05D006521 ORTHO05D008087 3.9e-110 402.5 348 59.8
Hund13498 Selenicereus undatus HOM05D006521 ORTHO05D008087 3.6e-108 396.0 338 56.2
unitig_32.g11814 Utricularia gibba HOM05D006521 ORTHO05D008087 3.6e-108 396.0 356 55.6
Cfa002704 Carpinus fangiana HOM05D006521 ORTHO05D008087 6.2e-108 395.2 349 56.2
HanXRQChr15g0471711 Helianthus annuus HOM05D006521 ORTHO05D008087 1.4e-107 394.0 344 58.4
CAN.G1494.2 Capsicum annuum HOM05D006521 ORTHO05D008087 3.1e-107 392.9 364 55.2
Nn1g05268 Nelumbo nucifera HOM05D006521 ORTHO05D008087 3.8e-105 386.0 309 59.2
DCAR_011503 Daucus carota HOM05D006521 ORTHO05D008087 1.4e-104 384.0 380 51.8
HPP92_016137 Vanilla planifolia HOM05D006521 ORTHO05D008087 5.6e-101 372.1 396 51.3
A01p00740 Brassica napus HOM05D006521 ORTHO05D008087 1.3e-100 370.9 284 70.8
Lj4A881T25 Lonicera japonica HOM05D006521 ORTHO05D008087 2.8e-100 369.8 300 63.7
ATR0789G153 Amborella trichopoda HOM05D006521 ORTHO05D008087 8.1e-100 368.2 473 42.1
CDE10G1235 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 2.7e-95 353.2 346 50.9
Nitab4.5_0005597g0010 Nicotiana tabacum HOM05D006521 ORTHO05D008087 1.0e-94 351.3 366 51.9
Atru.chr1.3715 Acer truncatum HOM05D006521 ORTHO05D008087 2.1e-92 343.6 377 50.4
Lj4A883T21 Lonicera japonica HOM05D006521 ORTHO05D008087 3.1e-91 339.7 414 47.1
COL.COLO4_09911 Corchorus olitorius HOM05D006521 ORTHO05D008087 2.6e-90 336.7 349 50.7
Actinidia36602 Actinidia chinensis HOM05D006521 ORTHO05D008087 8.7e-86 321.6 303 54.5
SEGI_26188 Sequoiadendron giganteum HOM05D006521 ORTHO05D008087 9.3e-80 301.6 556 33.5
SMO353G0213 Selaginella moellendorffii HOM05D006521 ORTHO05D008087 1.4e-75 287.7 344 42.2
AagrBONN_evm.TU.Sc2ySwM_368.767 Anthoceros agrestis HOM05D006521 ORTHO05D008087 1.0e-73 281.6 452 36.1
Os02g0550400 Oryza sativa ssp. japonica HOM05D006521 ORTHO05D008087 2.8e-68 263.5 340 45.6
Pp3c19_5060 Physcomitrium patens HOM05D006521 ORTHO05D008087 2.8e-68 263.5 457 34.1
EL10Ac6g15070 Beta vulgaris HOM05D006521 ORTHO05D008087 4.8e-68 262.7 203 61.6
Pp3c22_3810 Physcomitrium patens HOM05D006521 ORTHO05D008087 9.1e-67 258.5 460 34.1
Mapoly0165s0018 Marchantia polymorpha HOM05D006521 ORTHO05D008087 2.9e-65 253.4 502 33.3
Pp3c10_9400 Physcomitrium patens HOM05D006521 ORTHO05D008087 5.7e-61 239.2 435 31.7
ECA238G1388 Erigeron canadensis HOM05D001700 ORTHO05D002131 5.3e-59 232.6 161 68.9
ECA238G2228 Erigeron canadensis HOM05D006521 ORTHO05D008087 2.0e-58 230.7 159 69.2
Atru.chr1.3697 Acer truncatum HOM05D006521 ORTHO05D008087 1.3e-57 228.0 151 74.2
Pp3c14_5890 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.9e-56 224.2 429 30.5
BcaNung00904 Brassica carinata HOM05D006521 ORTHO05D008087 7.5e-53 212.2 117 88.9
Peaxi162Scf00295g00033 Petunia axillaris HOM05D006521 ORTHO05D008087 4.4e-45 186.4 178 54.5
HanXRQChr10g0288811 Helianthus annuus HOM05D006521 ORTHO05D008087 3.6e-39 166.8 105 76.2
CBR_g34484 Chara braunii HOM05D006521 ORTHO05D008087 4.7e-39 166.4 249 36.5
TAR636G0192 Trochodendron aralioides HOM05D006521 ORTHO05D008087 3.7e-28 130.2 126 50.8
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.5e-24 118.2 112 49.1
PRCOL_00001846 Prasinoderma coloniale HOM05D006521 ORTHO05D008087 2.6e-13 80.9 272 27.2
GSVIVG01022164001 Vitis vinifera HOM05D006521 ORTHO05D008087 2.4e-11 74.3 71 49.3
Atru.chr1.3698 Acer truncatum HOM05D006521 ORTHO05D008087 1.3e-09 68.6 77 48.1
CDE10G1372 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 1.1e-08 65.5 82 45.1


User provided reference genes

Program Settings