Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.2e-104 383.3 209 100.0
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.8e-93 344.7 209 90.4
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 8.3e-93 344.0 209 92.8
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 2.0e-91 339.3 209 86.1
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 2.5e-89 332.4 212 88.2
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 7.2e-89 330.9 210 89.0
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.6e-88 329.7 210 88.6
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.7e-88 328.9 209 88.5
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 4.0e-87 325.1 211 86.7
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 9.8e-86 320.5 212 86.8
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 2.4e-84 315.8 206 85.9
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 1.4e-79 300.1 210 81.9
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 6.3e-77 291.2 211 83.4
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 5.9e-75 284.6 212 79.7
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 2.9e-74 282.3 212 79.7
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.9e-69 265.8 212 70.8
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.1e-60 237.3 151 88.7
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-59 233.4 150 89.3
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 4.3e-57 225.3 158 82.9
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 1.1e-55 220.7 134 92.5
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 6.0e-51 204.9 193 64.8
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.3e-50 203.0 209 59.8
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 8.6e-50 201.1 211 59.7
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 8.6e-50 201.1 190 64.7
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 2.8e-48 196.1 200 61.0
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 8.1e-48 194.5 216 54.6
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.4e-47 193.7 226 54.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.8e-47 193.4 214 56.1
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.4e-47 193.0 202 60.4
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 5.2e-47 191.8 212 56.6
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.9e-47 191.0 226 53.5
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 8.9e-47 191.0 172 65.1
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 1.2e-46 190.7 226 54.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.2e-46 190.7 202 59.9
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.5e-46 190.3 226 53.5
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.4e-46 189.1 202 59.4
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 5.8e-46 188.3 210 55.7
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.7e-45 186.8 205 59.0
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.2e-45 186.4 195 56.9
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.2e-45 186.4 207 56.5
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 4.9e-45 185.3 213 52.1
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 6.4e-45 184.9 212 56.6
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.9e-44 183.3 196 58.7
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 9.2e-44 181.0 147 63.3
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.2e-43 180.6 160 63.1
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.7e-43 179.5 205 56.1
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 3.5e-43 179.1 199 55.3
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 7.8e-43 177.9 174 57.5
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 1.0e-42 177.6 174 53.4
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.3e-42 177.2 162 64.2
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 2.3e-42 176.4 152 63.8
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 3.0e-42 176.0 206 52.9
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 2.5e-41 172.9 160 61.9
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 4.3e-41 172.2 180 56.7
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 4.3e-41 172.2 211 55.5
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 4.3e-41 172.2 149 69.1
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 7.3e-41 171.4 226 52.7
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.3e-40 170.6 214 53.3
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 6.2e-40 168.3 213 52.6
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.8e-39 166.8 172 62.2
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.4e-39 166.4 208 52.4
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.4e-39 166.4 208 52.9
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.2e-38 164.1 161 62.1
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 2.0e-38 163.3 166 58.4
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 3.4e-38 162.5 215 49.8
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 9.9e-38 161.0 163 59.5
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.7e-37 160.2 171 57.9
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 6.4e-37 158.3 206 52.4
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 2.4e-36 156.4 114 71.9
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.4e-36 156.4 162 56.8
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 2.4e-36 156.4 183 52.5
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 2.4e-36 156.4 162 56.8
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 4.2e-36 155.6 162 56.8
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 9.3e-36 154.5 110 67.3
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.6e-35 153.7 148 60.1
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.3e-34 149.8 149 56.4
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 3.0e-34 149.4 145 55.9
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 6.6e-34 148.3 148 58.1
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 1.9e-33 146.7 99 90.9
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 5.6e-33 145.2 183 51.4
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 9.6e-33 144.4 97 91.8
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.6e-32 143.7 181 51.9
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.4e-31 140.6 140 58.6
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.2e-30 137.5 236 44.1
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 9.9e-30 134.4 234 42.7
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 2.2e-29 133.3 111 58.6
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.2e-28 129.0 99 64.6
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.6e-24 117.1 201 43.3
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 4.8e-24 115.5 94 55.3
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 8.1e-24 114.8 157 53.5
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 9.0e-23 111.3 287 35.2
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 9.0e-23 111.3 87 59.8
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 1.2e-22 110.9 74 89.2
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 3.4e-22 109.4 182 46.2
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 3.4e-22 109.4 74 67.6
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 6.5e-21 105.1 113 52.2
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 8.4e-21 104.8 183 38.3
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.4e-20 104.0 89 62.9
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 1.9e-20 103.6 181 46.4
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.5e-20 103.2 112 50.9
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 3.2e-20 102.8 184 37.5
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 3.2e-20 102.8 105 57.1
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.2e-20 102.4 89 64.0
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 9.3e-20 101.3 112 53.6
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 9.3e-20 101.3 167 42.5
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.2e-19 100.9 105 53.3
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.6e-19 100.5 197 38.1
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.6e-19 100.5 106 54.7
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.6e-19 100.5 106 54.7
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.1e-19 100.1 128 46.1
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.1e-19 100.1 188 40.4
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.1e-19 100.1 114 49.1
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.1e-19 100.1 180 45.0
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 3.5e-19 99.4 111 51.4
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 3.5e-19 99.4 177 36.2
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 4.6e-19 99.0 177 40.7
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 4.6e-19 99.0 104 51.9
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 7.9e-19 98.2 111 48.6
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 7.9e-19 98.2 112 51.8
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 7.9e-19 98.2 146 40.4
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 3.0e-18 96.3 112 48.2
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 3.0e-18 96.3 91 54.9
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 3.0e-18 96.3 103 50.5
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 3.9e-18 95.9 111 54.1
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.9e-18 95.9 91 57.1
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 5.1e-18 95.5 112 49.1
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 6.7e-18 95.1 148 45.3
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 8.7e-18 94.7 130 46.2
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 1.1e-17 94.4 146 46.6
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.1e-17 94.4 91 54.9
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.5e-17 94.0 110 52.7
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 2.5e-17 93.2 182 41.8
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 2.5e-17 93.2 92 52.2
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 3.3e-17 92.8 60 75.0
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 4.3e-17 92.4 92 51.1
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 4.3e-17 92.4 87 54.0
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 4.3e-17 92.4 91 52.7
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 4.3e-17 92.4 89 52.8
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 4.3e-17 92.4 108 47.2
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 5.7e-17 92.0 92 52.2
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 9.6e-17 91.3 92 51.1
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 1.3e-16 90.9 110 43.6
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.6e-16 90.5 92 51.1
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 2.8e-16 89.7 87 52.9
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 6.2e-16 88.6 189 36.5
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 6.2e-16 88.6 189 36.5
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.1e-15 87.8 165 37.6
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 5.3e-15 85.5 110 41.8
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 2.6e-14 83.2 79 55.7
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 3.4e-14 82.8 92 63.0
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.0e-13 81.3 105 45.7
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 2.2e-13 80.1 91 48.4
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 5.5e-12 75.5 134 36.6
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 9.3e-12 74.7 105 41.9
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 9.3e-12 74.7 148 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 4.6e-11 72.4 107 38.3
A07p42060 Brassica napus HOM05D000237 ORTHO05D017465 6.1e-11 72.0 80 56.2
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.3e-10 70.9 63 65.1
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 3.0e-10 69.7 81 48.1
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 2.5e-09 66.6 91 56.0
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 9.7e-09 64.7 91 54.9
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.1e-07 61.2 66 50.0
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.4e-07 60.8 89 41.6
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 2.4e-07 60.1 55 58.2
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 5.3e-07 58.9 50 56.0
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 6.9e-07 58.5 60 51.7
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.2e-06 57.8 51 60.8


User provided reference genes

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