Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 4.4e-71 271.2 135 100.0
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 4.4e-71 271.2 135 100.0
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 5.7e-71 270.8 135 99.3
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 1.3e-70 269.6 135 98.5
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 1.3e-70 269.6 135 98.5
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 1.3e-70 269.6 135 98.5
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.7e-70 269.2 135 98.5
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 1.7e-70 269.2 135 98.5
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 1.7e-70 269.2 135 98.5
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 1.1e-69 266.5 135 97.0
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.4e-69 266.2 135 97.8
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 2.4e-69 265.4 135 96.3
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 2.7e-68 261.9 135 95.6
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 2.7e-68 261.9 135 95.6
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 7.7e-68 260.4 135 96.3
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.2e-63 246.5 136 91.9
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 3.4e-63 245.0 123 98.4
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 3.4e-63 245.0 123 98.4
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.9e-62 241.9 135 89.6
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 7.8e-60 233.8 137 85.4
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 7.8e-60 233.8 135 83.7
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.0e-59 233.4 137 85.4
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.0e-59 233.4 137 85.4
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 1.3e-59 233.0 137 83.9
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 2.3e-59 232.3 137 84.7
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 3.0e-59 231.9 137 84.7
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 3.0e-59 231.9 137 84.7
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.6e-59 230.3 137 83.9
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.6e-59 230.3 137 83.9
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 8.6e-59 230.3 137 83.9
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.5e-58 228.8 137 81.8
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 2.5e-58 228.8 137 84.7
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 3.3e-58 228.4 137 83.2
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 4.3e-58 228.0 136 83.1
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 7.3e-58 227.3 137 81.8
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 1.2e-57 226.5 137 81.8
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 1.2e-57 226.5 129 88.4
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.2e-57 226.5 137 81.8
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 2.1e-57 225.7 136 83.8
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 2.8e-57 225.3 138 81.9
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 2.8e-57 225.3 137 83.9
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 4.7e-57 224.6 137 81.8
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 4.7e-57 224.6 134 82.8
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 6.2e-57 224.2 137 81.8
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 6.2e-57 224.2 137 81.8
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 6.2e-57 224.2 137 82.5
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 8.0e-57 223.8 144 81.9
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 1.4e-56 223.0 137 81.8
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 1.4e-56 223.0 137 81.8
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 1.4e-56 223.0 135 82.2
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 1.8e-56 222.6 137 81.0
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 1.8e-56 222.6 134 82.1
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 2.3e-56 222.2 142 83.1
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 3.1e-56 221.9 137 80.3
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 4.0e-56 221.5 125 88.8
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 4.0e-56 221.5 132 83.3
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 5.2e-56 221.1 136 79.4
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 5.2e-56 221.1 136 79.4
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 5.2e-56 221.1 136 79.4
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 6.8e-56 220.7 133 85.0
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 8.9e-56 220.3 137 80.3
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.2e-55 219.9 137 78.8
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 2.0e-55 219.2 123 90.2
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 2.6e-55 218.8 136 83.1
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 3.4e-55 218.4 132 81.1
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 3.4e-55 218.4 137 80.3
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 4.4e-55 218.0 148 78.4
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 4.4e-55 218.0 132 81.8
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 4.4e-55 218.0 123 89.4
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 5.8e-55 217.6 132 82.6
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 7.5e-55 217.2 145 78.6
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 9.8e-55 216.9 137 80.3
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 2.2e-54 215.7 129 82.9
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 2.9e-54 215.3 137 79.6
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 2.9e-54 215.3 140 77.9
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 6.4e-54 214.2 134 79.1
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 8.3e-54 213.8 130 80.0
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.1e-53 213.4 138 79.0
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 4.1e-53 211.5 137 75.2
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 4.1e-53 211.5 137 78.1
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 4.1e-53 211.5 164 70.7
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 5.4e-53 211.1 132 79.5
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 7.0e-53 210.7 137 75.2
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 9.2e-53 210.3 131 77.9
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 1.2e-52 209.9 144 76.4
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 1.2e-52 209.9 130 79.2
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 2.0e-52 209.1 129 80.6
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 2.7e-52 208.8 108 97.2
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 6.0e-52 207.6 144 72.9
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 1.0e-51 206.8 138 73.9
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.7e-51 206.1 130 77.7
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 3.0e-51 205.3 142 74.6
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 3.9e-51 204.9 131 80.2
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 5.0e-51 204.5 169 68.6
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 8.6e-51 203.8 140 72.1
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.9e-50 202.6 133 75.2
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 3.3e-50 201.8 129 79.1
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 5.6e-50 201.1 128 79.7
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 9.5e-50 200.3 123 81.3
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 8.1e-49 197.2 127 74.0
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 4.0e-48 194.9 126 80.2
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 6.8e-48 194.1 131 73.3
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 8.9e-48 193.7 135 74.1
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 8.9e-48 193.7 131 71.8
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 1.2e-47 193.4 124 75.8
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 3.4e-47 191.8 140 77.1
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 6.4e-46 187.6 115 85.2
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 4.6e-44 181.4 110 81.8
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.3e-43 179.1 110 82.7
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.1e-42 176.8 110 82.7
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.1e-42 176.8 106 86.8
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 1.9e-42 176.0 110 81.8
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 7.3e-42 174.1 109 79.8
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 2.1e-41 172.6 114 78.1
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 3.1e-40 168.7 106 83.0
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.2e-39 166.8 145 62.8
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 1.4e-37 159.8 113 74.3
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 4.1e-37 158.3 125 63.2
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 5.4e-37 157.9 106 72.6
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 7.1e-37 157.5 82 96.3
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 2.7e-36 155.6 115 64.3
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.3e-35 153.3 112 73.2
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 2.1e-33 146.0 133 59.4
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.4e-32 143.3 85 88.2
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 2.4e-32 142.5 84 89.3
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 2.4e-29 132.5 75 84.0
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 2.4e-29 132.5 181 45.3
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 1.6e-28 129.8 86 81.4
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 2.7e-28 129.0 84 82.1
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 1.3e-27 126.7 84 79.8
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 3.9e-27 125.2 120 56.7
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 2.5e-26 122.5 101 56.4
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.3e-26 121.7 75 77.3
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.1e-25 119.4 112 49.1
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 8.1e-25 117.5 132 51.5
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 2.0e-23 112.8 110 57.3
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 1.2e-20 103.6 65 80.0
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 3.5e-20 102.1 64 78.1
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 1.3e-19 100.1 53 84.9
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 3.9e-19 98.6 125 38.4
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.1e-18 97.1 53 81.1
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 2.4e-16 89.4 52 75.0
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 2.4e-16 89.4 61 73.8
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.2e-15 87.0 61 68.9
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 3.4e-15 85.5 107 42.1
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 1.7e-14 83.2 60 76.7
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 2.2e-14 82.8 77 54.5
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 3.2e-13 79.0 62 67.7
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 9.3e-13 77.4 45 75.6
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.5e-10 70.1 88 48.9
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 2.5e-10 69.3 126 35.7
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 7.6e-07 57.8 53 58.5


User provided reference genes

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