Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 7.9e-83 310.5 164 100.0
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 7.0e-63 244.2 163 81.6
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 2.2e-61 239.2 162 78.4
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 4.7e-59 231.5 173 75.1
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 1.6e-54 216.5 169 72.8
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 1.0e-53 213.8 173 69.9
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 6.1e-51 204.5 170 68.8
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 1.4e-50 203.4 171 67.8
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 3.0e-50 202.2 197 61.9
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 4.4e-49 198.4 167 67.1
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 2.8e-48 195.7 194 58.8
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 3.5e-46 188.7 208 57.7
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 6.6e-45 184.5 208 56.7
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 1.1e-44 183.7 160 62.5
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 2.8e-43 179.1 173 60.7
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 1.0e-42 177.2 202 55.4
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 5.6e-36 154.8 160 53.1
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 3.4e-33 145.6 153 52.9
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 1.4e-31 140.2 164 53.0
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 9.2e-31 137.5 152 52.0
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 1.2e-30 137.1 162 50.6
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 1.2e-30 137.1 151 53.6
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 1.2e-30 137.1 168 48.2
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.6e-30 136.7 152 52.6
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 7.8e-30 134.4 148 50.0
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 7.8e-30 134.4 149 53.0
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.0e-29 134.0 152 50.0
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.0e-29 134.0 164 47.6
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 1.3e-29 133.7 152 51.3
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 1.3e-29 133.7 189 45.0
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 1.7e-29 133.3 174 49.4
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.3e-29 132.9 156 51.3
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 2.3e-29 132.9 151 54.3
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 3.9e-29 132.1 167 46.7
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 3.9e-29 132.1 162 48.1
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 5.0e-29 131.7 152 48.7
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 5.0e-29 131.7 153 51.0
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 6.6e-29 131.3 160 51.2
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.1e-28 130.6 151 49.0
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.5e-28 130.2 152 49.3
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 2.5e-28 129.4 168 44.6
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 2.5e-28 129.4 162 48.1
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 4.3e-28 128.6 160 48.1
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 5.6e-28 128.3 152 50.0
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 1.2e-27 127.1 152 46.1
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 2.8e-27 125.9 151 48.3
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 2.8e-27 125.9 161 47.2
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 4.7e-27 125.2 158 46.8
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 6.2e-27 124.8 157 47.1
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 6.2e-27 124.8 149 46.3
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 6.2e-27 124.8 153 46.4
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 6.2e-27 124.8 153 46.4
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 6.2e-27 124.8 152 44.7
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 1.8e-26 123.2 152 48.0
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 1.8e-26 123.2 152 48.7
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 2.3e-26 122.9 149 46.3
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 2.3e-26 122.9 151 48.3
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 8.9e-26 120.9 153 45.8
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.5e-25 120.2 154 46.8
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 2.0e-25 119.8 153 45.8
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 2.6e-25 119.4 148 44.6
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 4.4e-25 118.6 161 49.1
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 7.5e-25 117.9 152 48.7
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 9.9e-25 117.5 151 47.7
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 1.3e-24 117.1 147 46.3
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 3.7e-24 115.5 161 47.8
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 6.4e-24 114.8 170 41.8
BraA03t14903Z Brassica rapa HOM05D006778 ORTHO05D008341 8.3e-24 114.4 155 52.3
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 8.3e-24 114.4 152 43.4
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 1.1e-23 114.0 159 42.8
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 1.1e-23 114.0 155 42.6
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 1.1e-23 114.0 158 45.6
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 3.2e-23 112.5 169 44.4
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 3.2e-23 112.5 152 46.7
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 1.2e-22 110.5 182 41.2
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 1.6e-22 110.2 156 42.3
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 7.8e-22 107.8 149 43.0
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 1.0e-21 107.5 152 40.1
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 3.9e-21 105.5 152 41.4
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 9.5e-20 100.9 166 41.6
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 1.6e-19 100.1 161 38.5
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 2.8e-19 99.4 163 39.9
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 3.6e-19 99.0 151 40.4
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 8.9e-18 94.4 164 41.5
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 2.2e-16 89.7 138 42.0
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 1.9e-15 86.7 154 35.7
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 4.2e-15 85.5 171 32.7
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 2.1e-14 83.2 86 52.3
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 1.0e-13 80.9 107 48.6
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 1.3e-13 80.5 80 55.0
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 1.3e-13 80.5 80 55.0
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 6.6e-13 78.2 122 38.5
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.5e-12 77.0 149 36.9
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 1.5e-12 77.0 131 39.7
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 2.5e-12 76.3 124 40.3
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 7.3e-12 74.7 130 40.0
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 7.3e-12 74.7 157 31.8
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 2.8e-11 72.8 42 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 5.2e-10 68.6 128 36.7
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 6.9e-10 68.2 79 48.1
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 6.9e-10 68.2 151 31.8
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 1.2e-09 67.4 127 41.7
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 2.6e-09 66.2 154 33.1
BcaB05g23407 Brassica carinata HOM05D006778 ORTHO05D008341 4.4e-09 65.5 79 59.5
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 7.6e-09 64.7 69 56.5
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 9.9e-09 64.3 154 31.8
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.7e-08 63.5 72 50.0
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.7e-08 63.5 72 50.0
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.7e-08 63.5 72 50.0
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.7e-08 63.5 72 50.0
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 2.2e-08 63.2 101 41.6
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 8.4e-08 61.2 52 61.5
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 1.9e-07 60.1 55 56.4
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 1.9e-07 60.1 139 36.0
BcaB07g32727 Brassica carinata HOM05D004750 ORTHO05D006207 5.4e-07 58.5 75 57.3
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 1.2e-06 57.4 124 38.7
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 2.1e-06 56.6 123 34.1
BcaC05g25005 Brassica carinata HOM05D002222 ORTHO05D002354 7.8e-06 54.7 73 56.2


User provided reference genes

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