Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 1.3e-304 1048.9 526 100.0
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 8.0e-262 906.7 529 86.8
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 2.6e-260 901.7 526 86.3
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 2.9e-259 898.3 528 85.8
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.4e-258 896.0 528 85.4
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 2.4e-258 895.2 528 85.2
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 1.2e-257 892.9 528 85.4
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 1.3e-256 889.4 528 85.0
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 4.7e-246 854.4 526 83.1
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 2.2e-243 845.5 527 80.8
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 2.9e-243 845.1 526 82.1
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 8.2e-206 720.7 540 69.8
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 7.7e-196 687.6 547 66.5
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 3.2e-186 655.6 372 86.3
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 2.5e-162 576.2 379 77.0
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 1.2e-145 520.8 533 52.7
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 1.8e-144 516.9 555 51.2
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 6.4e-142 508.4 552 49.5
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 7.0e-141 505.0 568 49.3
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 2.7e-140 503.1 537 50.8
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 3.5e-140 502.7 505 52.5
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 3.5e-140 502.7 529 51.0
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 6.0e-140 501.9 540 50.6
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 4.0e-136 489.2 505 51.7
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 2.6e-135 486.5 542 50.9
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 4.4e-135 485.7 526 50.0
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 6.4e-134 481.9 517 50.1
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 5.4e-133 478.8 513 51.5
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 1.1e-130 471.1 545 46.8
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 1.9e-130 470.3 534 49.4
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 5.8e-127 458.8 550 46.4
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 1.7e-126 457.2 533 47.8
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 1.1e-125 454.5 554 46.8
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 1.2e-124 451.1 548 46.5
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 4.6e-124 449.1 562 44.3
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 2.3e-123 446.8 550 46.2
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 5.1e-123 445.7 475 51.8
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 8.6e-123 444.9 548 46.0
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 2.5e-122 443.4 431 52.7
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 4.3e-122 442.6 530 45.7
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 4.7e-121 439.1 552 45.3
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 1.4e-120 437.6 549 44.6
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 1.8e-120 437.2 516 45.5
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 4.0e-120 436.0 536 47.9
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 1.7e-118 430.6 538 44.6
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 1.7e-118 430.6 527 44.2
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 1.7e-118 430.6 543 45.7
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 1.1e-117 427.9 549 44.6
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 2.4e-117 426.8 581 41.8
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 7.1e-117 425.2 544 43.8
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 1.6e-116 424.1 587 41.9
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 6.0e-116 422.2 486 47.7
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 3.0e-115 419.9 606 41.6
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.5e-114 416.8 524 44.3
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.6e-113 412.9 521 44.0
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 6.2e-113 412.1 532 45.7
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 9.0e-112 408.3 513 45.2
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 7.6e-111 405.2 517 44.5
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 3.8e-110 402.9 472 46.2
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 4.9e-110 402.5 498 47.8
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 1.1e-109 401.4 393 53.4
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 3.2e-109 399.8 519 44.3
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 9.3e-109 398.3 523 42.1
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 3.5e-108 396.4 504 46.2
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 5.1e-107 392.5 433 48.7
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 6.2e-105 385.6 625 37.4
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 2.6e-103 380.2 437 48.1
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 1.1e-101 374.8 393 49.6
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 1.1e-101 374.8 575 38.6
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 3.2e-101 373.2 706 35.6
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 1.0e-99 368.2 466 44.8
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 6.7e-99 365.5 426 45.5
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.1e-98 364.8 477 44.7
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 3.3e-98 363.2 468 44.2
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 3.3e-98 363.2 427 48.7
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 3.7e-97 359.8 539 40.1
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.4e-96 357.8 423 45.4
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.8e-96 357.5 391 48.6
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 9.0e-96 355.1 412 46.4
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 3.8e-94 349.7 580 38.8
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 6.5e-94 349.0 538 38.1
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 9.3e-93 345.1 358 48.9
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 4.6e-92 342.8 423 45.9
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 6.0e-92 342.4 569 38.7
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 5.1e-91 339.3 391 46.0
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 5.7e-90 335.9 388 50.5
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 2.1e-89 334.0 512 40.2
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 4.1e-88 329.7 398 48.0
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 2.0e-87 327.4 440 42.5
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 5.7e-82 309.3 385 46.5
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 3.3e-74 283.5 393 39.4
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 8.2e-73 278.9 361 42.7
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 9.1e-64 248.8 280 47.1
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 5.5e-61 239.6 307 43.0
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 1.4e-56 224.9 331 40.2
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.1e-53 215.3 233 50.2
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 9.4e-53 212.2 235 48.1
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 8.0e-52 209.1 497 29.8
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 1.7e-46 191.4 534 27.7
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 2.9e-38 164.1 222 41.0
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 4.7e-36 156.8 275 38.5
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 7.8e-31 139.4 201 41.3
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.3e-30 138.7 378 29.1
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 2.2e-25 121.3 224 29.9
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 2.0e-23 114.8 208 30.8
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 5.4e-16 90.1 154 36.4
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.2e-12 79.0 169 33.1
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 3.4e-10 70.9 156 34.6
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.4e-10 70.5 94 39.4
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 9.9e-10 69.3 101 37.6
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.8e-09 67.4 69 46.4


User provided reference genes

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