Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 6.8e-87 324.3 209 100.0
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 8.0e-80 300.8 211 90.0
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 3.9e-74 282.0 210 88.1
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 8.6e-74 280.8 208 87.5
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.1e-73 280.4 208 87.0
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 5.6e-73 278.1 208 87.5
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 5.6e-73 278.1 208 87.5
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 9.8e-70 267.3 212 84.0
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.9e-69 265.8 211 82.5
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.2e-68 262.3 210 85.2
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 5.4e-68 261.5 212 82.1
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.7e-64 248.4 210 82.9
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 7.0e-60 234.6 210 67.6
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.0e-58 229.2 209 64.6
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 8.6e-58 227.6 193 67.4
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 8.6e-58 227.6 193 67.4
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 8.3e-53 211.1 221 62.9
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 2.4e-52 209.5 210 74.3
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.1e-51 206.5 127 80.3
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.7e-51 206.1 225 60.0
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.3e-50 203.8 127 79.5
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.0e-50 202.6 127 79.5
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.0e-50 202.6 127 79.5
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.5e-49 200.3 127 79.5
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.3e-49 198.7 126 78.6
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 5.6e-49 198.4 126 78.6
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 7.3e-49 198.0 123 80.5
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 9.5e-49 197.6 214 70.6
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 9.5e-49 197.6 214 56.1
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.5e-49 197.6 126 78.6
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 9.5e-49 197.6 213 57.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 3.6e-48 195.7 126 77.8
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 3.6e-48 195.7 127 77.2
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 6.2e-48 194.9 210 60.5
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 6.2e-48 194.9 213 59.2
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 8.1e-48 194.5 210 62.9
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 1.1e-47 194.1 126 76.2
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.4e-47 193.0 127 75.6
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 4.0e-47 192.2 211 59.2
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 4.0e-47 192.2 215 57.7
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 6.8e-47 191.4 127 72.4
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 6.8e-47 191.4 127 72.4
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 6.8e-47 191.4 214 57.5
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.0e-46 189.9 230 53.5
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.4e-46 188.7 127 74.8
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 4.4e-46 188.7 127 73.2
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 5.8e-46 188.3 125 74.4
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 5.8e-46 188.3 127 74.0
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 5.8e-46 188.3 215 58.1
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 5.8e-46 188.3 127 70.9
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 5.8e-46 188.3 216 59.7
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 7.6e-46 188.0 127 73.2
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 7.6e-46 188.0 127 74.8
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 9.9e-46 187.6 127 73.2
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.3e-45 187.2 213 58.7
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.7e-45 186.8 127 73.2
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 2.2e-45 186.4 122 73.8
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.2e-45 186.4 126 72.2
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.2e-45 186.4 221 55.7
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 2.9e-45 186.0 127 72.4
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.9e-45 186.0 127 72.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 2.9e-45 186.0 120 76.7
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.8e-45 185.7 126 72.2
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 3.8e-45 185.7 210 55.2
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 3.8e-45 185.7 213 54.0
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 3.8e-45 185.7 128 72.7
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 4.9e-45 185.3 127 73.2
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.9e-45 185.3 218 53.2
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.4e-45 184.9 210 55.2
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.1e-44 184.1 127 72.4
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.1e-44 184.1 224 54.0
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.1e-44 184.1 126 73.8
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.4e-44 183.7 128 74.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-44 183.7 173 61.3
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.4e-44 183.7 127 72.4
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.4e-44 183.7 216 54.2
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.9e-44 183.3 127 71.7
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.4e-44 183.0 127 70.9
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.4e-44 183.0 127 70.9
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.4e-44 183.0 127 73.2
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.4e-44 183.0 209 54.5
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 2.4e-44 183.0 131 71.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 2.4e-44 183.0 126 73.0
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.2e-44 182.6 215 52.6
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 3.2e-44 182.6 222 51.4
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 3.2e-44 182.6 127 71.7
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 4.2e-44 182.2 127 72.4
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 5.4e-44 181.8 127 71.7
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 5.4e-44 181.8 126 70.6
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.1e-44 181.4 127 68.5
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 7.1e-44 181.4 127 70.9
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.2e-43 180.6 206 57.8
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.6e-43 180.3 214 57.5
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.6e-43 180.3 127 68.5
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.1e-43 179.9 127 68.5
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.1e-43 179.9 127 68.5
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.7e-43 179.5 126 69.0
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 3.5e-43 179.1 127 70.1
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 3.5e-43 179.1 213 54.0
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 4.6e-43 178.7 162 60.5
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 6.0e-43 178.3 127 68.5
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.3e-42 177.2 208 56.2
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 3.9e-42 175.6 218 51.4
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 6.6e-42 174.9 210 53.8
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.6e-42 174.9 124 70.2
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 6.6e-42 174.9 213 54.5
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.9e-41 173.3 128 69.5
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.5e-41 172.9 209 56.0
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.5e-41 172.9 127 66.9
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.5e-41 172.9 124 69.4
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 3.3e-41 172.6 213 50.7
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 9.6e-41 171.0 217 54.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.4e-39 167.2 115 72.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 2.4e-39 166.4 110 78.2
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.4e-39 166.4 219 50.7
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 4.0e-39 165.6 106 78.3
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 9.0e-39 164.5 236 44.1
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.2e-38 164.1 104 78.8
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 5.8e-38 161.8 134 62.7
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 9.9e-38 161.0 111 71.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 3.8e-37 159.1 127 66.9
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 5.4e-36 155.2 206 52.4
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-35 153.7 211 48.3
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 6.0e-35 151.8 181 53.0
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 6.0e-35 151.8 125 59.2
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 7.8e-35 151.4 192 50.5
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-34 151.0 131 62.6
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 3.9e-34 149.1 95 75.8
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.5e-33 146.4 125 57.6
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 6.2e-32 141.7 123 62.6
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.4e-30 136.0 107 61.7
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.2e-29 133.3 109 65.1
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.1e-28 131.0 108 62.0
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.4e-28 129.8 101 67.3
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 7.1e-28 128.3 84 76.2
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.0e-27 125.2 98 63.3
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 6.0e-27 125.2 209 42.1
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.9e-25 120.2 103 57.3
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 9.6e-25 117.9 90 65.6
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.8e-24 116.3 94 63.8
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 4.0e-23 112.5 82 65.9
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 2.6e-22 109.8 173 47.4
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.6e-22 109.8 171 47.4
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-21 107.1 79 68.4
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 7.1e-20 101.7 166 47.0
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 2.5e-17 93.2 58 81.0
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-16 90.9 82 56.1
BcaB03g11665 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-16 90.1 105 80.0
BcaB08g34314 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-14 84.0 106 79.2
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.6e-14 83.2 74 56.8
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.4e-14 82.8 48 81.2
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-13 80.1 43 93.0
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.1e-12 77.8 113 39.8
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.9e-12 77.0 110 39.1
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 6.1e-11 72.0 155 40.6
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-09 67.4 57 61.4
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 3.3e-09 66.2 100 43.0
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.7e-09 65.5 138 40.6
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.3e-08 64.3 41 68.3
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 1.4e-07 60.8 37 73.0


User provided reference genes

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