Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g17580 Schrenkiella parvula HOM05D003882 ORTHO05D004598 3.7e-76 288.1 145 100.0
A05p29250 Brassica napus HOM05D003882 ORTHO05D004598 7.3e-40 167.5 125 71.2
BcaNung02678 Brassica carinata HOM05D003882 ORTHO05D004598 1.5e-37 159.8 103 79.6
AL2G37760 Arabidopsis lyrata HOM05D003882 ORTHO05D004598 3.4e-37 158.7 103 75.7
BcaC06g30598 Brassica carinata HOM05D003882 ORTHO05D004598 9.9e-37 157.1 103 78.6
Carub.0008s1098 Capsella rubella HOM05D003882 ORTHO05D004598 1.3e-36 156.8 103 77.7
AL8G25150 Arabidopsis lyrata HOM05D003882 ORTHO05D004598 1.4e-35 153.3 103 74.8
AT5G50960 Arabidopsis thaliana HOM05D003882 ORTHO05D004598 4.2e-35 151.8 103 73.8
Sp3g17870 Schrenkiella parvula HOM05D003882 ORTHO05D004598 6.0e-34 147.9 103 73.8
Thhalv10024147m.g Eutrema salsugineum HOM05D003882 ORTHO05D004598 8.7e-33 144.1 103 69.9
C05p44780 Brassica napus HOM05D003882 ORTHO05D004598 1.1e-32 143.7 103 73.8
BolC5t33204H Brassica oleracea HOM05D003882 ORTHO05D004598 1.1e-32 143.7 103 73.8
A05p29270 Brassica napus HOM05D003882 ORTHO05D004598 5.6e-32 141.4 103 73.8
BraA05t21810Z Brassica rapa HOM05D003882 ORTHO05D004598 1.3e-31 140.2 103 72.8
CARHR257250 Cardamine hirsuta HOM05D003882 ORTHO05D004598 1.6e-31 139.8 103 70.9
THA.LOC104802387 Tarenaya hassleriana HOM05D003882 ORTHO05D004598 4.8e-31 138.3 103 71.8
BraA01t03571Z Brassica rapa HOM05D003882 ORTHO05D004598 1.4e-30 136.7 102 69.6
A01p34890 Brassica napus HOM05D003882 ORTHO05D004598 4.0e-30 135.2 102 68.6
Aa31LG11G15090 Aethionema arabicum HOM05D003882 ORTHO05D004598 5.3e-30 134.8 103 70.9
C01p44280 Brassica napus HOM05D003882 ORTHO05D004598 1.5e-29 133.3 102 67.6
BolC1t04394H Brassica oleracea HOM05D003882 ORTHO05D004598 1.5e-29 133.3 102 67.6
BcaC05g24912 Brassica carinata HOM05D003882 ORTHO05D004598 3.4e-29 132.1 104 68.3
THA.LOC104820947 Tarenaya hassleriana HOM05D003882 ORTHO05D004598 2.2e-28 129.4 103 68.0
CARHR257230 Cardamine hirsuta HOM05D003882 ORTHO05D004598 2.9e-28 129.0 103 67.0
BcaC09g48941 Brassica carinata HOM05D003882 ORTHO05D004598 6.4e-28 127.9 90 72.2
Eucgr.D01084 Eucalyptus grandis HOM05D003882 ORTHO05D004598 2.7e-26 122.5 103 65.0
CiPaw.03G050800 Carya illinoinensis HOM05D003882 ORTHO05D004598 4.6e-26 121.7 103 64.1
Thecc.04G028000 Theobroma cacao HOM05D003882 ORTHO05D004598 4.6e-26 121.7 103 64.1
Solyc12g096690.2 Solanum lycopersicum HOM05D003882 ORTHO05D004598 6.0e-26 121.3 103 63.1
Thecc.05G285600 Theobroma cacao HOM05D003882 ORTHO05D004598 6.0e-26 121.3 103 62.1
COL.COLO4_15327 Corchorus olitorius HOM05D003882 ORTHO05D004598 7.9e-26 120.9 103 62.1
Sopen12g032520 Solanum pennellii HOM05D003882 ORTHO05D004598 7.9e-26 120.9 103 63.1
Duzib177G1128 Durio zibethinus HOM05D003882 ORTHO05D004598 1.0e-25 120.6 103 61.2
Thhalv10021039m.g Eutrema salsugineum HOM05D003882 ORTHO05D004598 1.3e-25 120.2 103 56.3
Ciclev10015755m.g Citrus clementina HOM05D003882 ORTHO05D004598 1.8e-25 119.8 103 61.2
PGSC0003DMG402029267 Solanum tuberosum HOM05D003882 ORTHO05D004598 1.8e-25 119.8 103 63.1
Cfa007272 Carpinus fangiana HOM05D003882 ORTHO05D004598 2.3e-25 119.4 103 63.1
Haze_14818 Corylus avellana HOM05D003882 ORTHO05D004598 2.3e-25 119.4 103 63.1
CiPaw.04G033400 Carya illinoinensis HOM05D003882 ORTHO05D004598 3.0e-25 119.0 103 63.1
Prupe.1G532900 Prunus persica HOM05D003882 ORTHO05D004598 5.1e-25 118.2 103 60.2
Sabra16G0217800 Salix brachista HOM05D003882 ORTHO05D004598 5.1e-25 118.2 103 62.1
Sed0009517 Sechium edule HOM05D003882 ORTHO05D004598 5.1e-25 118.2 103 63.1
PGSC0003DMG401029267 Solanum tuberosum HOM05D003882 ORTHO05D004598 5.1e-25 118.2 103 62.1
QL02p072792 Quercus lobata HOM05D003882 ORTHO05D004598 6.7e-25 117.9 103 60.2
TWI36G1591 Tripterygium wilfordii HOM05D003882 ORTHO05D004598 6.7e-25 117.9 103 60.2
Hma1.2p1_0227F.1_g095890 Hydrangea macrophylla HOM05D003882 ORTHO05D004598 8.7e-25 117.5 103 62.1
Manes.15G156600 Manihot esculenta HOM05D003882 ORTHO05D004598 8.7e-25 117.5 103 61.2
Gohir.A09G033520 Gossypium hirsutum HOM05D003882 ORTHO05D004598 1.1e-24 117.1 103 59.2
Gohir.D09G033800 Gossypium hirsutum HOM05D003882 ORTHO05D004598 1.1e-24 117.1 103 59.2
Gorai.006G038800 Gossypium raimondii HOM05D003882 ORTHO05D004598 1.1e-24 117.1 103 59.2
Psat6g020160 Pisum sativum HOM05D003882 ORTHO05D004598 1.1e-24 117.1 103 59.2
Duzib106G0341 Durio zibethinus HOM05D003882 ORTHO05D004598 1.5e-24 116.7 103 61.2
Lju41A47T20 Lonicera japonica HOM05D003882 ORTHO05D004598 1.5e-24 116.7 103 59.2
arahy.Tifrunner.gnm1.ann1.61M3XX Arachis hypogaea HOM05D003882 ORTHO05D004598 1.9e-24 116.3 103 61.2
Actinidia06312 Actinidia chinensis HOM05D003882 ORTHO05D004598 2.5e-24 115.9 103 61.2
EL10Ac7g16174 Beta vulgaris HOM05D003882 ORTHO05D004598 2.5e-24 115.9 103 60.2
CDE09G0216 Ceratophyllum demersum HOM05D003882 ORTHO05D004598 2.5e-24 115.9 103 58.3
MBI17_g07068_MAGBIO Magnolia biondii HOM05D003882 ORTHO05D004598 2.5e-24 115.9 103 61.2
Sed0012212 Sechium edule HOM05D003882 ORTHO05D004598 2.5e-24 115.9 103 61.2
Lsat_1_v5_gn_0_8180 Lactuca sativa HOM05D003882 ORTHO05D004598 3.3e-24 115.5 103 60.2
QL06p031218 Quercus lobata HOM05D003882 ORTHO05D004598 3.3e-24 115.5 103 59.2
Atru.chr6.2490 Acer truncatum HOM05D003882 ORTHO05D004598 4.3e-24 115.2 103 61.2
C07p50020 Brassica napus HOM05D003882 ORTHO05D000252 4.3e-24 115.2 76 78.9
Lj1g0003723 Lotus japonicus HOM05D003882 ORTHO05D004598 4.3e-24 115.2 103 59.2
TWI18G0330 Tripterygium wilfordii HOM05D003882 ORTHO05D004598 4.3e-24 115.2 103 58.3
arahy.Tifrunner.gnm1.ann1.2L480B Arachis hypogaea HOM05D003882 ORTHO05D004598 5.6e-24 114.8 103 60.2
BraA03t14240Z Brassica rapa HOM05D003882 ORTHO05D004598 5.6e-24 114.8 76 78.9
ClCG04G001410 Citrullus lanatus HOM05D003882 ORTHO05D004598 5.6e-24 114.8 103 61.2
Potri.001G336900 Populus trichocarpa HOM05D003882 ORTHO05D004598 5.6e-24 114.8 103 60.2
CAN.G566.35 Capsicum annuum HOM05D003882 ORTHO05D004598 7.4e-24 114.4 103 61.2
Medtr1g016110 Medicago truncatula HOM05D003882 ORTHO05D004598 9.6e-24 114.0 103 58.3
Nitab4.5_0001961g0110 Nicotiana tabacum HOM05D003882 ORTHO05D004598 9.6e-24 114.0 103 62.1
PSO675G6248 Papaver somniferum HOM05D003882 ORTHO05D004598 9.6e-24 114.0 103 58.3
Peaxi162Scf00169g00820 Petunia axillaris HOM05D003882 ORTHO05D004598 9.6e-24 114.0 103 61.2
QL09p018923 Quercus lobata HOM05D003882 ORTHO05D004598 9.6e-24 114.0 103 58.3
Dinv41146 Davidia involucrata HOM05D003882 ORTHO05D004598 1.3e-23 113.6 103 60.2
Lalb_Chr05g0220891 Lupinus albus HOM05D003882 ORTHO05D004598 1.3e-23 113.6 103 61.2
Peaxi162Scf00046g02622 Petunia axillaris HOM05D003882 ORTHO05D004598 1.3e-23 113.6 103 61.2
Ca_13161_v3 Cicer arietinum L. HOM05D003882 ORTHO05D004598 1.6e-23 113.2 103 57.3
FAN05G0109 Fragaria x ananassa HOM05D003882 ORTHO05D004598 1.6e-23 113.2 104 60.6
Lalb_Chr16g0386401 Lupinus albus HOM05D003882 ORTHO05D004598 1.6e-23 113.2 103 59.2
Prupe.3G300400 Prunus persica HOM05D003882 ORTHO05D004598 1.6e-23 113.2 103 58.3
Nitab4.5_0005160g0070 Nicotiana tabacum HOM05D003882 ORTHO05D004598 2.1e-23 112.8 103 61.2
TPR.G13098 Trifolium pratense HOM05D003882 ORTHO05D004598 2.1e-23 112.8 103 58.3
Migut.H00063 Erythranthe guttata HOM05D003882 ORTHO05D004598 2.8e-23 112.5 103 58.3
PSO017G7334 Papaver somniferum HOM05D003882 ORTHO05D004598 2.8e-23 112.5 103 57.3
PSO541G0693 Papaver somniferum HOM05D003882 ORTHO05D004598 2.8e-23 112.5 103 57.3
Zm00001eb246360 Zea mays HOM05D003882 ORTHO05D004598 2.8e-23 112.5 103 58.3
Actinidia36170 Actinidia chinensis HOM05D003882 ORTHO05D004598 3.7e-23 112.1 103 59.2
Aqoxy6G00237 Aquilegia oxysepala HOM05D003882 ORTHO05D004598 3.7e-23 112.1 103 57.3
Duzib264G0449 Durio zibethinus HOM05D003882 ORTHO05D004598 4.8e-23 111.7 103 58.3
Glyma.17G228500 Glycine max HOM05D003882 ORTHO05D004598 4.8e-23 111.7 92 64.1
Zm00001eb183970 Zea mays HOM05D003882 ORTHO05D004598 4.8e-23 111.7 103 61.2
Cc00_g03690 Coffea canephora HOM05D003882 ORTHO05D004598 6.2e-23 111.3 103 59.2
FAN09G0633 Fragaria x ananassa HOM05D003882 ORTHO05D004598 6.2e-23 111.3 104 58.7
Glyma.14G095000 Glycine max HOM05D003882 ORTHO05D004598 6.2e-23 111.3 103 58.3
TAR629G1857 Trochodendron aralioides HOM05D003882 ORTHO05D004598 6.2e-23 111.3 103 59.2
Medtr1g019620 Medicago truncatula HOM05D003882 ORTHO05D004598 8.2e-23 110.9 103 57.3
CSS0015034 Camellia sinensis var. sinensis HOM05D001584 ORTHO05D004598 1.1e-22 110.5 103 59.2
CDE02G2967 Ceratophyllum demersum HOM05D003882 ORTHO05D004598 1.1e-22 110.5 103 56.3
FvH4_6g52730 Fragaria vesca HOM05D003882 ORTHO05D004598 1.1e-22 110.5 104 58.7
FAN14G5526 Fragaria x ananassa HOM05D003882 ORTHO05D004598 1.1e-22 110.5 104 58.7
DCAR_015078 Daucus carota HOM05D003882 ORTHO05D004598 1.4e-22 110.2 103 59.2
ATR0782G139 Amborella trichopoda HOM05D003882 ORTHO05D004598 1.8e-22 109.8 103 51.5
MELO3C008983.2 Cucumis melo HOM05D003882 ORTHO05D004598 1.8e-22 109.8 103 60.2
CsaV3_4G031060 Cucumis sativus L. HOM05D003882 ORTHO05D004598 1.8e-22 109.8 103 60.2
Os04g0485400 Oryza sativa ssp. japonica HOM05D003882 ORTHO05D004598 1.8e-22 109.8 103 59.2
ECA232G3599 Erigeron canadensis HOM05D003882 ORTHO05D004598 2.4e-22 109.4 103 58.3
Hma1.2p1_1484F.1_g286340 Hydrangea macrophylla HOM05D003882 ORTHO05D004598 2.4e-22 109.4 103 58.3
MD17G1017500 Malus domestica HOM05D003882 ORTHO05D004598 2.4e-22 109.4 103 60.2
HanXRQChr11g0321651 Helianthus annuus HOM05D003882 ORTHO05D004598 3.1e-22 109.0 104 59.6
Cc00_g01950 Coffea canephora HOM05D003882 ORTHO05D004598 4.0e-22 108.6 103 58.3
PGR142G3649 Punica granatum HOM05D003882 ORTHO05D004598 4.0e-22 108.6 103 58.3
RcHm_v2.0_Chr2g0174341 Rosa chinensis HOM05D003882 ORTHO05D004598 4.0e-22 108.6 104 59.6
CANSAT64G0400 Cannabis sativa HOM05D003882 ORTHO05D004598 5.3e-22 108.2 103 59.2
DCAR_005600 Daucus carota HOM05D003882 ORTHO05D004598 5.3e-22 108.2 103 57.3
Oeu058762.1 Olea europaea HOM05D003882 ORTHO05D004598 6.9e-22 107.8 103 59.2
LjContig00155g0003661 Lotus japonicus HOM05D003882 ORTHO05D004598 9.0e-22 107.5 103 55.3
HanXRQChr15g0470031 Helianthus annuus HOM05D003882 ORTHO05D004598 1.2e-21 107.1 105 58.1
Nitab4.5_0000136g0010 Nicotiana tabacum HOM05D003882 ORTHO05D004598 1.2e-21 107.1 103 58.3
Phvul.001G035900 Phaseolus vulgaris HOM05D003882 ORTHO05D004598 1.5e-21 106.7 103 55.3
VMungo0647G1296 Vigna mungo HOM05D003882 ORTHO05D004598 1.5e-21 106.7 103 55.3
AUR62014165 Chenopodium quinoa HOM05D003882 ORTHO05D004598 2.0e-21 106.3 103 57.3
AUR62014166 Chenopodium quinoa HOM05D003882 ORTHO05D004598 2.0e-21 106.3 103 57.3
MSTRG.3108 Avicennia marina HOM05D003882 ORTHO05D004598 2.6e-21 105.9 103 56.3
MSTRG.24071 Avicennia marina HOM05D003882 ORTHO05D004598 3.4e-21 105.5 103 57.3
AUR62002701 Chenopodium quinoa HOM05D003882 ORTHO05D004598 3.4e-21 105.5 103 56.3
Lj1g0002107 Lotus japonicus HOM05D003882 ORTHO05D004598 3.4e-21 105.5 103 53.4
MD09G1017000 Malus domestica HOM05D003882 ORTHO05D004598 3.4e-21 105.5 103 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3627 Anthoceros agrestis HOM05D003882 ORTHO05D004598 5.8e-21 104.8 103 52.4
SalBow8G1058 Salvia bowleyana HOM05D003882 ORTHO05D004598 7.6e-21 104.4 103 54.4
SHI03873 Sapria himalayana HOM05D003882 ORTHO05D004598 1.0e-20 104.0 103 57.3
CSS0002062 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D003383 1.3e-20 103.6 103 57.3
SEGI_31184 Sequoiadendron giganteum HOM05D003882 ORTHO05D004598 1.3e-20 103.6 103 49.5
Hund27387 Selenicereus undatus HOM05D003882 ORTHO05D004598 4.9e-20 101.7 103 56.3
TAR371G0752 Trochodendron aralioides HOM05D003882 ORTHO05D004598 4.9e-20 101.7 103 57.3
HanXRQChr05g0147771 Helianthus annuus HOM05D003882 ORTHO05D004598 6.5e-20 101.3 104 53.8
Sc14g0001460 Simmondsia chinensis HOM05D003882 ORTHO05D004598 1.1e-19 100.5 103 52.4
HPP92_019923 Vanilla planifolia HOM05D003882 ORTHO05D004598 5.5e-19 98.2 103 52.4
SMO301G0043 Selaginella moellendorffii HOM05D003882 ORTHO05D004598 9.3e-19 97.4 103 50.5
BolC7t45504H Brassica oleracea HOM05D003882 ORTHO05D000252 6.7e-17 91.3 64 78.1
BcaC05g28398 Brassica carinata HOM05D003882 ORTHO05D004598 8.7e-17 90.9 73 67.1
CSS0000820 Camellia sinensis var. sinensis HOM05D001584 ORTHO05D004598 2.5e-16 89.4 103 52.4
Pp3c11_10240 Physcomitrium patens HOM05D003882 ORTHO05D004598 2.2e-15 86.3 103 44.7
Mapoly0071s0001 Marchantia polymorpha HOM05D003882 ORTHO05D004598 6.3e-15 84.7 103 45.6
TPR.G39975 Trifolium pratense HOM05D003882 ORTHO05D004598 9.0e-14 80.9 82 53.7
Oeu033367.1 Olea europaea HOM05D003882 ORTHO05D004598 1.9e-11 73.2 57 66.7
QL04p003729 Quercus lobata HOM05D003882 ORTHO05D004598 3.2e-11 72.4 83 51.8
FAN02G2946 Fragaria x ananassa HOM05D003882 ORTHO05D004598 4.2e-11 72.0 132 40.2
GSVIVG01001845001 Vitis vinifera HOM05D003882 ORTHO05D004598 2.1e-10 69.7 103 42.7
CBR_g50436 Chara braunii HOM05D003882 ORTHO05D004598 6.1e-10 68.2 45 68.9
MCO01G078 Micromonas commoda HOM05D003882 ORTHO05D004598 2.3e-09 66.2 69 47.8
Os02g0601100 Oryza sativa ssp. japonica HOM05D003882 ORTHO05D004598 3.9e-09 65.5 79 50.6
PRCOL_00004632 Prasinoderma coloniale HOM05D003882 ORTHO05D004598 3.9e-09 65.5 90 43.3
Cre12.g494400 Chlamydomonas reinhardtii HOM05D003882 ORTHO05D004598 7.4e-08 61.2 43 65.1
Hma1.2p1_0227F.1_g095900 Hydrangea macrophylla HOM05D003882 ORTHO05D004598 3.7e-07 58.9 36 77.8


User provided reference genes

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