Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 3.8e-143 511.5 267 100.0
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 2.4e-129 465.7 268 92.5
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 4.5e-128 461.5 268 91.0
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.0e-127 460.3 270 91.5
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 1.3e-127 459.9 268 90.7
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 8.5e-127 457.2 272 89.7
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 6.8e-124 447.6 268 88.8
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 2.6e-123 445.7 264 90.9
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 2.7e-120 435.6 270 87.8
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 2.3e-119 432.6 268 87.3
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 1.6e-117 426.4 251 89.6
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 9.8e-115 417.2 273 82.1
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 2.9e-114 415.6 274 81.8
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 3.3e-110 402.1 276 80.1
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.4e-108 396.7 220 94.1
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 2.6e-107 392.5 267 79.8
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 4.3e-102 375.2 290 70.3
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.8e-101 372.5 206 91.7
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.7e-95 353.2 271 69.7
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 4.6e-88 328.6 216 78.7
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.3e-87 327.0 217 79.3
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.7e-87 326.6 221 77.4
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 3.9e-87 325.5 231 74.9
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.1e-87 325.1 240 72.5
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 5.1e-87 325.1 240 72.5
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 6.6e-87 324.7 213 77.9
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 8.6e-87 324.3 263 70.7
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.1e-86 323.9 270 68.5
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.5e-86 323.6 214 78.5
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.9e-86 323.2 203 80.8
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.9e-86 323.2 224 75.4
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.9e-86 323.2 213 77.9
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 5.6e-86 321.6 212 77.4
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 7.3e-86 321.2 222 74.3
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.6e-85 320.1 180 86.7
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 1.6e-85 320.1 221 75.6
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.1e-85 319.7 254 68.5
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 2.1e-85 319.7 223 74.9
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 2.8e-85 319.3 219 75.3
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 3.6e-85 318.9 262 67.9
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 4.7e-85 318.5 257 66.5
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 8.1e-85 317.8 183 83.6
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 8.1e-85 317.8 216 76.4
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 8.1e-85 317.8 216 75.0
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 8.1e-85 317.8 264 68.9
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 8.1e-85 317.8 275 65.5
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 1.4e-84 317.0 214 73.8
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.4e-84 317.0 257 66.5
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.4e-84 317.0 215 74.9
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 1.4e-84 317.0 277 63.5
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.4e-84 317.0 217 76.5
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 1.8e-84 316.6 262 67.9
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.8e-84 316.6 217 74.7
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 3.1e-84 315.8 250 67.6
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 4.0e-84 315.5 215 74.9
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 4.0e-84 315.5 247 70.4
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 4.0e-84 315.5 260 66.9
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 6.8e-84 314.7 220 73.2
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 8.9e-84 314.3 219 74.4
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 8.9e-84 314.3 255 67.8
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.2e-83 313.9 202 78.7
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.2e-83 313.9 249 67.5
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.5e-83 313.5 215 74.0
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.5e-83 313.5 214 74.3
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.5e-83 313.5 249 67.5
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.6e-83 312.8 214 74.3
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.6e-83 312.8 254 66.5
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 2.6e-83 312.8 249 67.5
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.6e-83 312.8 216 74.5
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 3.4e-83 312.4 256 66.0
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 3.4e-83 312.4 264 67.0
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.4e-83 312.4 214 74.8
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 3.4e-83 312.4 260 68.5
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 4.4e-83 312.0 266 65.4
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.8e-83 311.6 213 75.1
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 7.6e-83 311.2 217 74.2
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 7.6e-83 311.2 204 77.0
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 9.9e-83 310.8 239 69.0
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 9.9e-83 310.8 261 65.5
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.3e-82 310.5 203 75.9
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.3e-82 310.5 249 66.7
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 2.2e-82 309.7 233 69.5
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.2e-82 309.7 214 74.3
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 6.4e-82 308.1 233 69.1
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 8.4e-82 307.8 229 72.1
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 8.4e-82 307.8 216 72.7
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.1e-81 307.4 255 64.7
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 3.2e-81 305.8 212 72.2
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.2e-81 305.8 214 72.9
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 3.2e-81 305.8 214 72.9
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 5.4e-81 305.1 268 63.8
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.2e-80 303.9 179 82.7
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.6e-80 303.5 212 73.6
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 2.7e-80 302.8 228 69.3
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 2.7e-80 302.8 216 72.2
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 4.6e-80 302.0 200 76.0
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.3e-79 300.4 232 66.8
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 3.0e-79 299.3 263 60.5
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.1e-79 298.5 240 68.3
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 6.6e-79 298.1 178 81.5
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.5e-78 297.0 270 60.4
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.9e-78 296.6 261 61.7
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 5.6e-78 295.0 254 63.8
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 7.3e-78 294.7 212 71.2
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 7.3e-78 294.7 227 65.2
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.2e-72 277.3 179 70.9
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.2e-72 277.3 213 68.5
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 3.0e-71 272.7 234 60.3
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 3.9e-71 272.3 170 73.5
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 3.1e-68 262.7 201 70.1
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 6.2e-61 238.4 179 61.5
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.0e-55 221.1 228 48.2
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 4.2e-49 199.1 133 75.2
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 7.4e-46 188.3 118 75.4
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.4e-44 184.1 111 79.3
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 2.6e-43 179.9 209 45.9
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.0e-39 167.9 244 41.8
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 4.0e-23 112.8 171 36.3
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.0e-18 98.2 75 69.3
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 3.8e-18 96.3 78 65.4
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.7e-16 90.1 56 76.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 8.3e-13 78.6 61 62.3
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 1.9e-09 67.4 228 25.0
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.6e-08 64.3 207 26.1
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 1.0e-07 61.6 213 25.8
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 1.8e-07 60.8 218 26.6
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 1.8e-07 60.8 245 26.5
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 2.3e-07 60.5 215 26.5
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 2.3e-07 60.5 211 25.6
Gohir.D04G061800 Gossypium hirsutum HOM05D002933 ORTHO05D009221 6.8e-07 58.9 245 25.7
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 6.8e-07 58.9 233 24.0
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 6.8e-07 58.9 213 25.4
FAN06G0750 Fragaria x ananassa HOM05D002933 ORTHO05D009221 8.8e-07 58.5 218 24.8
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 8.8e-07 58.5 262 22.9
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 1.5e-06 57.8 207 25.1
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 1.5e-06 57.8 215 27.0
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.5e-06 57.8 242 25.6
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 2.0e-06 57.4 247 25.9
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 2.0e-06 57.4 213 24.9
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 2.6e-06 57.0 211 26.1
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 2.6e-06 57.0 211 25.6
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 3.4e-06 56.6 211 26.5
FAN03G0743 Fragaria x ananassa HOM05D002933 ORTHO05D009221 3.4e-06 56.6 213 25.4
FAN06G0728 Fragaria x ananassa HOM05D002933 ORTHO05D009221 3.4e-06 56.6 213 25.4
Atru.chr12.545 Acer truncatum HOM05D002933 ORTHO05D009221 4.4e-06 56.2 252 25.4
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 4.4e-06 56.2 239 26.4
Phvul.007G010700 Phaseolus vulgaris HOM05D002933 ORTHO05D009221 4.4e-06 56.2 263 24.7
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 5.7e-06 55.8 217 24.9
COL.COLO4_14921 Corchorus olitorius HOM05D002933 ORTHO05D009221 5.7e-06 55.8 257 24.5
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 5.7e-06 55.8 216 26.4
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 5.7e-06 55.8 215 26.0
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 7.5e-06 55.5 260 23.5
RcHm_v2.0_Chr1g0365771 Rosa chinensis HOM05D002933 ORTHO05D009221 7.5e-06 55.5 213 25.4
Sabra10G0162300 Salix brachista HOM05D002933 ORTHO05D009221 7.5e-06 55.5 211 25.1
Lj5g0017951 Lotus japonicus HOM05D002933 ORTHO05D009221 9.8e-06 55.1 208 26.0


User provided reference genes

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