Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 0.0e+00 1684.1 832 100.0
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 0.0e+00 1394.8 831 84.4
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 0.0e+00 1352.4 826 81.8
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 0.0e+00 1350.5 835 82.6
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 0.0e+00 1347.4 835 82.6
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 0.0e+00 1339.7 833 82.4
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 0.0e+00 1334.7 830 80.4
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 0.0e+00 1327.4 834 80.7
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 0.0e+00 1309.3 842 79.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 0.0e+00 1309.3 842 79.5
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 0.0e+00 1307.7 833 79.1
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 0.0e+00 1294.3 833 78.0
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 0.0e+00 1109.4 846 69.3
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.4e-228 797.0 873 51.1
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 6.0e-227 791.6 871 50.1
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.5e-225 786.9 871 50.1
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 6.8e-223 778.1 864 50.7
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 9.8e-222 774.2 864 49.7
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 9.8e-222 774.2 858 50.6
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 4.9e-221 771.9 859 49.4
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-220 770.8 858 49.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 3.2e-220 769.2 858 49.2
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.2e-219 767.3 853 50.3
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 2.1e-219 766.5 841 50.3
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.0e-218 764.2 858 49.2
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.5e-217 759.6 872 49.4
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 2.8e-216 756.1 861 48.9
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 3.7e-213 745.7 854 47.8
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.9e-213 745.3 815 50.9
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 9.2e-212 741.1 854 47.4
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.1e-211 740.0 870 47.7
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 4.6e-211 738.8 858 48.5
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 3.0e-210 736.1 875 48.1
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.1e-207 727.6 862 47.8
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.8e-207 724.9 863 48.3
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.2e-206 724.2 862 48.6
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.2e-205 719.9 680 58.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 4.9e-205 718.8 850 47.9
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.1e-203 713.4 886 47.4
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.1e-203 713.4 868 46.8
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 2.7e-203 713.0 830 48.1
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 6.0e-203 711.8 856 47.0
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.3e-201 706.1 878 46.8
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.1e-199 699.5 859 46.2
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.0e-194 684.5 851 45.6
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.0e-194 684.5 851 45.6
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 8.7e-194 681.4 839 47.3
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 1.1e-193 681.0 835 48.4
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.5e-193 679.9 842 46.0
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.6e-192 677.2 887 44.8
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.1e-192 676.8 870 44.6
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 6.2e-192 675.2 850 46.2
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.4e-191 674.1 898 44.9
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.4e-191 673.3 864 44.8
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.0e-191 672.5 870 44.3
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 6.9e-191 671.8 898 44.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 2.6e-190 669.8 829 47.2
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 2.6e-190 669.8 829 47.2
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 5.8e-190 668.7 862 45.1
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.8e-190 668.7 874 45.7
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 5.8e-190 668.7 857 45.7
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 3.8e-189 666.0 878 44.4
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.9e-188 663.7 853 46.2
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 7.1e-188 661.8 874 44.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 7.1e-188 661.8 857 46.0
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.6e-187 660.6 873 44.4
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 6.0e-187 658.7 884 44.5
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 7.9e-187 658.3 819 45.7
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 3.0e-186 656.4 869 45.7
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 5.1e-186 655.6 856 44.5
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 6.7e-186 655.2 859 44.9
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.9e-185 653.7 848 43.8
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.8e-184 649.8 877 44.2
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 4.8e-184 649.0 869 44.2
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 4.8e-184 649.0 821 44.0
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 9.0e-183 644.8 856 44.3
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.3e-181 641.0 903 42.9
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.9e-181 639.8 869 44.0
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 4.9e-181 639.0 854 41.9
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.9e-180 637.1 860 43.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-180 636.7 720 48.5
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 1.6e-179 634.0 853 44.0
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 6.7e-178 628.6 856 44.2
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 8.7e-178 628.2 846 42.4
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 3.3e-177 626.3 904 42.1
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 7.4e-177 625.2 751 46.2
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.5e-174 617.5 845 41.7
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.1e-172 608.6 839 43.4
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.2e-171 607.8 855 42.7
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.6e-171 607.4 876 41.4
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.0e-170 604.7 852 43.0
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 5.1e-170 602.4 933 40.4
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 6.7e-170 602.1 911 41.3
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.7e-170 601.7 737 45.5
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 8.2e-168 595.1 824 41.6
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.2e-166 591.3 816 43.9
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 6.7e-162 575.5 671 48.3
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 5.7e-161 572.4 387 75.7
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 3.7e-160 569.7 788 40.9
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.1e-159 568.2 900 39.2
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.4e-159 567.8 858 40.9
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.4e-159 567.8 856 40.4
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 5.0e-157 559.3 808 42.9
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 2.2e-152 543.9 832 41.3
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.5e-145 521.2 722 41.4
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.2e-136 490.7 599 47.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.8e-135 487.6 580 46.2
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 4.7e-131 473.0 775 39.2
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.1e-124 451.8 681 39.5
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.7e-123 446.4 852 36.2
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.5e-121 441.4 576 44.1
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.0e-121 441.0 604 44.0
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.6e-118 431.4 651 40.2
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 1.7e-117 427.9 502 48.6
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 1.4e-114 418.3 619 41.5
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 8.9e-114 415.6 549 44.3
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 1.5e-97 361.7 377 53.6
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.7e-93 348.2 546 38.8
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 7.6e-89 332.8 543 39.2
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 8.4e-88 329.3 491 42.4
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 2.1e-86 324.7 631 34.9
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 4.2e-79 300.4 958 29.0
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.1e-78 298.1 534 37.5
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 4.5e-73 280.4 619 30.5
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 6.4e-72 276.6 626 32.4
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 3.0e-69 267.7 516 34.3
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 8.1e-67 259.6 235 54.5
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 5.8e-65 253.4 456 36.4
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 7.6e-65 253.1 689 30.2
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.4e-60 236.5 204 61.3
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 3.0e-53 214.5 198 60.6
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 6.7e-53 213.4 276 48.6
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 2.2e-51 208.4 193 58.0
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.2e-51 206.5 224 50.0
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 7.7e-49 199.9 155 69.0
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.0e-45 189.5 176 56.8
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.8e-45 188.7 159 60.4
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.2e-43 181.8 318 37.7
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 2.0e-41 175.3 175 56.0
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 5.9e-41 173.7 155 57.4
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 7.7e-41 173.3 190 51.1
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.5e-36 159.1 131 61.8
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.7e-35 155.6 149 54.4
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 4.1e-34 151.0 148 54.1
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 4.5e-33 147.5 110 60.9
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 2.9e-32 144.8 246 38.2
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 7.2e-31 140.2 260 34.2
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.6e-30 139.0 107 57.9
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 3.6e-30 137.9 107 57.0
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 8.0e-30 136.7 135 55.6
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 3.0e-29 134.8 153 49.7
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.5e-28 132.5 134 53.7
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.6e-28 131.7 133 53.4
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.7e-27 127.9 91 69.2
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 3.7e-27 127.9 94 59.6
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 6.3e-27 127.1 93 67.7
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-25 122.9 91 67.0
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 2.0e-25 122.1 196 38.3
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.1e-22 112.1 429 26.8
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 3.4e-20 104.8 78 64.1
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.4e-20 104.8 227 32.2
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 9.8e-20 103.2 267 26.2
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 8.3e-19 100.1 335 25.7
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.1e-18 99.8 99 46.5
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.1e-15 89.7 146 39.0
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 5.5e-15 87.4 136 39.0
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.0e-13 81.6 80 56.2
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 2.8e-11 75.1 72 58.3
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.4e-10 72.8 87 52.9
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 7.0e-10 70.5 100 43.0
Cfa027026 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.0e-08 66.6 464 22.4
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 1.0e-08 66.6 55 63.6
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.0e-08 66.6 71 46.5
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-08 66.6 57 63.2
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.0e-08 66.6 58 55.2
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.7e-08 65.9 49 59.2
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 1.6e-06 59.3 76 34.2
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.8e-06 58.5 91 39.6


User provided reference genes

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