Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 7.5e-184 647.1 346 100.0
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 9.9e-168 593.6 389 84.8
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 6.4e-167 590.9 389 84.6
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 6.4e-167 590.9 404 82.2
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 3.9e-164 581.6 405 79.5
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 1.3e-159 566.6 400 79.5
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.1e-158 563.5 389 81.7
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 4.8e-154 548.1 385 79.2
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 1.2e-152 543.5 389 80.5
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 3.0e-140 502.3 411 70.6
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 5.0e-135 485.0 350 78.9
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 2.0e-123 446.4 364 71.2
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.4e-121 439.5 419 59.2
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 2.4e-121 439.5 402 60.4
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 5.3e-121 438.3 410 64.1
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 3.8e-119 432.2 420 61.0
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.8e-119 432.2 397 62.2
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 6.5e-119 431.4 400 59.2
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 5.5e-118 428.3 447 60.0
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 7.2e-118 427.9 410 62.0
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 9.4e-118 427.6 361 68.7
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 3.6e-117 425.6 426 62.7
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 4.7e-117 425.2 330 68.5
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 1.0e-116 424.1 418 61.2
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 1.4e-116 423.7 437 59.0
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.8e-116 423.3 356 69.7
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 3.0e-116 422.5 418 61.5
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.9e-116 422.2 435 59.5
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 5.2e-116 421.8 430 57.7
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 8.8e-116 421.0 420 61.9
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 8.8e-116 421.0 419 62.1
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 8.8e-116 421.0 338 65.7
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 8.8e-116 421.0 432 60.4
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.1e-115 420.6 411 59.9
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.0e-115 419.9 425 61.2
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 2.6e-115 419.5 423 61.9
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.3e-115 419.1 427 58.5
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 7.4e-115 417.9 445 57.3
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.4e-115 417.9 382 64.4
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 7.4e-115 417.9 431 59.6
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 2.2e-114 416.4 439 57.9
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 2.2e-114 416.4 389 62.7
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 2.8e-114 416.0 440 57.0
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 3.7e-114 415.6 383 63.4
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 6.3e-114 414.8 421 60.3
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 8.2e-114 414.5 442 57.9
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 8.2e-114 414.5 449 59.0
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 1.1e-113 414.1 253 81.0
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.1e-113 414.1 394 58.1
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.4e-113 413.7 442 57.0
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.4e-113 413.7 429 57.3
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 2.4e-113 412.9 455 55.2
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 2.4e-113 412.9 430 60.5
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 4.1e-113 412.1 444 55.6
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 5.3e-113 411.8 442 56.6
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.2e-112 410.6 400 62.5
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 1.6e-112 410.2 449 54.3
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 4.5e-112 408.7 416 57.7
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 4.5e-112 408.7 435 57.7
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 5.9e-112 408.3 407 60.2
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 7.7e-112 407.9 259 79.2
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 1.7e-111 406.8 386 62.2
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.7e-111 406.8 436 56.0
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 2.2e-111 406.4 394 59.4
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 2.2e-111 406.4 436 59.6
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 5.0e-111 405.2 268 78.7
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 5.0e-111 405.2 363 68.3
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 6.5e-111 404.8 413 60.8
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 6.5e-111 404.8 438 55.9
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.5e-111 404.4 394 61.9
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 1.5e-110 403.7 407 61.2
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.9e-110 403.3 394 61.4
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 4.2e-110 402.1 265 75.1
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.5e-110 401.7 394 61.2
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 5.5e-110 401.7 447 54.1
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 7.2e-110 401.4 438 54.3
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 1.2e-109 400.6 447 55.5
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.6e-109 400.2 424 56.6
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.6e-109 400.2 489 51.9
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 2.1e-109 399.8 454 55.9
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.6e-109 399.1 400 61.0
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 3.6e-109 399.1 228 84.2
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 6.1e-109 398.3 448 54.7
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 6.1e-109 398.3 432 59.3
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.0e-108 397.5 376 64.9
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 8.8e-108 394.4 456 52.9
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 1.5e-107 393.7 477 50.1
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 4.4e-107 392.1 388 61.6
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 3.7e-106 389.0 247 77.7
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.1e-105 387.5 467 51.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 7.0e-105 384.8 337 68.0
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 9.1e-105 384.4 483 52.6
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 7.7e-104 381.3 429 56.2
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 5.0e-103 378.6 255 76.5
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 3.2e-102 375.9 524 49.6
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.6e-101 373.6 229 78.2
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 8.0e-101 371.3 408 55.9
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 2.3e-100 369.8 398 54.0
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 4.0e-100 369.0 511 47.9
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 2.0e-99 366.7 265 70.6
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 5.9e-96 355.1 228 73.2
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 5.9e-96 355.1 228 73.2
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 4.2e-94 349.0 228 74.1
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.2e-93 347.4 268 66.8
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 4.7e-85 318.9 389 52.2
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 5.2e-84 315.5 387 53.0
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 6.8e-84 315.1 261 75.9
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.6e-77 292.7 154 85.7
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.4e-73 280.0 208 68.3
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 4.1e-73 279.3 145 87.6
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 8.9e-68 261.5 311 53.4
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.2e-65 253.1 159 73.6
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 4.6e-64 249.2 351 50.1
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 7.3e-62 241.9 345 49.0
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 2.8e-61 240.0 259 52.1
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 6.8e-60 235.3 226 50.0
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.7e-58 230.7 146 76.0
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 3.8e-58 229.6 153 76.5
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.9e-57 227.3 264 57.2
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 9.2e-57 224.9 264 47.0
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 3.9e-55 219.5 173 66.5
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.8e-52 210.7 322 49.1
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 7.6e-51 205.3 98 96.9
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.3e-50 204.5 311 52.4
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.6e-48 197.6 342 47.4
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 2.1e-48 197.2 114 80.7
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 6.0e-48 195.7 372 44.4
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.5e-43 179.5 92 84.8
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 1.3e-42 177.9 101 82.2
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.5e-40 169.9 96 84.4
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 3.0e-39 166.8 319 45.1
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 3.9e-39 166.4 96 81.2
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 7.4e-38 162.2 130 59.2
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 3.1e-36 156.8 84 84.5
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 2.6e-35 153.7 83 83.1
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 2.1e-32 144.1 80 86.2
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.3e-31 141.4 85 81.2
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 8.7e-31 138.7 80 83.8
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 4.3e-30 136.3 291 39.5
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 4.8e-29 132.9 110 66.4
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 9.0e-28 128.6 79 75.9
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.8e-23 114.4 83 69.9
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.3e-21 108.2 78 73.1
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 4.8e-21 106.3 74 70.3
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 6.3e-21 105.9 182 50.5
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 9.0e-20 102.1 257 39.3
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 2.6e-19 100.5 68 67.6
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.5e-19 99.8 241 40.7
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 5.9e-19 99.4 60 80.0
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.5e-18 95.5 235 37.4
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 5.1e-15 86.3 61 63.9
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 9.7e-14 82.0 251 40.6
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 5.9e-11 72.8 43 79.1
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 1.4e-07 61.6 231 30.3


User provided reference genes

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