Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 1.7e-51 205.7 102 100.0
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 8.8e-48 193.4 102 94.1
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 5.7e-47 190.7 102 94.1
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 7.4e-47 190.3 103 93.2
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 1.3e-46 189.5 102 93.1
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 2.2e-46 188.7 102 94.1
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.8e-45 185.7 102 92.2
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.8e-45 185.7 102 92.2
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 9.1e-45 183.3 100 92.0
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 1.6e-44 182.6 102 90.2
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 1.6e-44 182.6 102 90.2
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 6.5e-43 177.2 101 86.1
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 1.5e-42 176.0 98 87.8
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 4.2e-42 174.5 97 89.7
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.1e-34 149.8 94 76.6
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 1.9e-34 149.1 94 77.7
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 2.5e-34 148.7 87 82.8
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 5.5e-34 147.5 94 76.6
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 5.5e-34 147.5 94 76.6
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 1.2e-33 146.4 95 74.7
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.6e-33 146.0 96 76.0
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.1e-33 145.6 96 76.0
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.1e-33 145.6 96 76.0
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 2.1e-33 145.6 94 75.5
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 2.7e-33 145.2 97 72.2
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 2.7e-33 145.2 96 75.0
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 4.7e-33 144.4 96 71.9
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 6.1e-33 144.1 96 74.0
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 3.0e-32 141.7 87 79.3
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 5.2e-32 141.0 87 75.9
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 6.8e-32 140.6 94 73.4
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 8.8e-32 140.2 87 78.2
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 2.0e-31 139.0 97 69.1
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.6e-31 138.7 97 69.1
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.6e-31 138.7 97 69.1
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 4.4e-31 137.9 99 67.7
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 7.5e-31 137.1 97 71.1
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.3e-30 136.3 88 77.3
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 2.2e-30 135.6 96 69.8
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.2e-30 135.6 88 73.9
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 3.7e-30 134.8 94 72.3
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 8.3e-30 133.7 97 67.0
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.1e-29 133.3 87 72.4
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.4e-29 132.9 89 76.4
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 1.8e-29 132.5 88 72.7
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.4e-29 132.1 97 64.9
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 3.1e-29 131.7 97 66.0
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 3.1e-29 131.7 88 71.6
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 4.1e-29 131.3 87 71.3
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 9.1e-29 130.2 87 69.0
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.2e-28 129.8 70 85.7
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 1.2e-28 129.8 98 68.4
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 1.2e-28 129.8 88 70.5
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 1.2e-28 129.8 88 70.5
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.0e-28 129.0 98 67.3
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.0e-28 129.0 98 67.3
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.0e-28 129.0 98 67.3
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 5.9e-28 127.5 89 74.2
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.7e-27 125.9 87 69.0
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 3.8e-27 124.8 98 65.3
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 5.0e-27 124.4 87 70.1
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 6.5e-27 124.0 87 69.0
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 1.5e-26 122.9 85 68.2
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.5e-26 122.9 95 61.1
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 3.3e-26 121.7 94 66.0
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 3.3e-26 121.7 99 61.6
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 4.2e-26 121.3 70 81.4
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 5.5e-26 120.9 143 49.0
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 9.5e-26 120.2 93 65.6
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 1.2e-25 119.8 135 52.6
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.6e-25 119.4 95 66.3
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.6e-25 119.4 87 65.5
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.1e-25 119.0 85 69.4
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 2.8e-25 118.6 87 64.4
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 4.7e-25 117.9 88 65.9
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 6.1e-25 117.5 87 64.4
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.0e-24 116.7 87 65.5
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 3.0e-24 115.2 91 64.8
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 5.2e-24 114.4 98 62.2
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 2.0e-23 112.5 96 59.4
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 3.4e-23 111.7 80 70.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.3e-22 109.8 88 65.9
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 1.3e-22 109.8 84 60.7
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.8e-22 108.6 98 57.1
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 3.7e-22 108.2 98 58.2
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 6.3e-22 107.5 167 44.3
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.4e-21 106.3 100 58.0
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 5.9e-20 100.9 88 61.4
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 1.1e-18 96.7 89 60.7
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 2.5e-18 95.5 64 71.9
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.1e-17 92.4 53 81.1
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 2.8e-17 92.0 88 58.0
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 6.1e-17 90.9 49 83.7
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 6.1e-17 90.9 61 65.6
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.4e-16 89.7 69 63.8
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 1.8e-16 89.4 49 83.7
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 5.2e-16 87.8 94 54.3
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 6.8e-16 87.4 69 68.1
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 3.7e-14 81.6 69 59.4
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 1.4e-13 79.7 73 61.6
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.8e-13 79.3 57 70.2
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 9.2e-13 77.0 49 65.3
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 2.0e-07 59.3 46 65.2
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 7.5e-07 57.4 40 70.0


User provided reference genes

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