Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 3620.5 1815 100.0
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 3310.8 1818 91.1
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 3306.5 1824 91.0
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 3296.9 1815 91.1
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 3280.3 1813 90.7
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 3277.3 1823 90.0
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 3259.2 1824 89.9
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 3242.6 1817 89.9
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 3238.0 1839 89.1
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 3216.0 1825 89.4
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 3212.2 1819 88.5
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 3205.2 1849 88.0
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 3205.2 1851 88.4
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 3161.7 1843 87.6
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 3112.8 1832 86.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 3004.2 1843 83.1
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2935.2 1818 81.0
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2680.6 1501 90.1
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2377.4 1850 66.1
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2374.0 1827 66.0
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2372.0 1827 66.0
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2363.6 1828 66.2
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2362.8 1827 65.8
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2360.5 1835 65.7
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2356.3 1829 65.8
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2353.9 1833 64.7
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2349.3 1831 64.4
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2348.2 1837 64.2
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2344.7 1932 62.5
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2342.8 1845 65.2
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2340.1 1824 65.7
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2335.8 1843 64.0
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2335.8 1933 62.8
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2332.0 1843 65.0
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2312.7 1855 63.1
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2300.4 1832 64.5
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2297.7 1890 61.9
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2297.3 1796 65.5
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2279.2 1824 63.3
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2278.4 1964 61.2
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2277.7 1700 68.2
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2264.6 1823 63.0
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2264.2 1827 62.3
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2259.6 1829 62.7
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2253.4 1831 62.9
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2253.4 1818 63.6
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2251.9 1827 62.2
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2251.9 1828 62.6
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2251.5 1949 60.9
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2250.7 1828 63.2
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2246.1 1837 62.3
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2241.1 1825 62.6
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2240.7 1825 62.5
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2237.2 1830 62.6
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2236.8 1824 62.6
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2233.8 1830 63.5
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2233.0 1823 62.5
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2229.9 1824 62.8
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2227.6 1830 62.4
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2224.1 1863 61.4
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2219.1 1946 60.1
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2189.5 1823 61.1
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2186.8 1819 62.3
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2184.1 1896 61.0
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2183.7 1820 61.4
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2167.9 1830 61.4
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2164.4 1832 61.2
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2156.7 1821 60.8
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2155.9 1828 61.2
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2148.2 1836 60.7
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2135.1 1829 60.4
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2133.2 1824 60.2
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2122.8 1731 62.2
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2120.9 1594 67.3
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2110.9 1830 59.8
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2084.3 1946 56.0
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2081.6 1727 62.2
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2064.3 1697 62.5
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2016.1 1858 59.0
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2001.9 1846 56.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1987.6 1837 57.0
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1958.3 1837 55.6
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1928.3 1453 67.7
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1873.6 1756 57.7
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1786.9 1472 62.6
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1634.0 1212 66.7
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1608.2 1215 66.2
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1569.3 1879 47.4
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1537.7 1326 60.2
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1448.0 1408 55.4
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1396.7 1925 42.2
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1384.8 973 71.8
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1361.3 1940 40.6
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1325.8 1779 42.4
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1267.7 1054 62.3
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1231.5 1351 51.8
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1140.2 935 59.8
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1127.1 1823 39.2
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1092.0 1211 48.6
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1089.7 901 60.4
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 5.0e-311 1072.0 785 68.3
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 3.6e-309 1065.8 1144 50.9
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 7.0e-289 998.4 914 59.6
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 3.0e-284 983.0 2138 33.8
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 2.6e-259 900.2 911 53.9
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.7e-234 817.8 810 54.0
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.7e-213 746.9 732 53.0
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 9.7e-206 722.2 855 46.3
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.4e-204 718.4 546 66.5
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 6.1e-200 703.0 516 67.4
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 4.2e-193 680.2 643 56.9
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 1.2e-192 678.7 508 66.3
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.0e-176 622.9 626 53.7
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.1e-172 612.5 526 57.2
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.2e-166 592.4 881 43.0
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 2.6e-166 591.3 881 40.0
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.1e-164 585.9 1067 36.4
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.8e-160 571.2 564 55.9
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 9.8e-150 536.2 731 43.4
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 6.0e-147 526.9 435 61.1
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 2.5e-137 495.0 402 62.7
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 2.1e-131 475.3 327 70.0
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.6e-123 449.1 439 54.2
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.5e-121 441.8 531 46.3
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 1.3e-120 439.5 315 70.5
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 3.8e-117 427.9 374 59.6
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.5e-113 416.0 511 45.6
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 8.7e-106 390.2 818 33.7
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 2.3e-98 365.5 328 59.5
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.3e-97 361.3 375 51.7
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 2.2e-96 359.0 395 51.4
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 5.9e-94 350.9 338 56.2
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 2.9e-93 348.6 312 58.3
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 8.5e-93 347.1 253 67.6
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.5e-89 336.3 410 51.5
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 5.7e-81 307.8 1010 27.3
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.0e-77 297.0 186 76.9
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 2.0e-73 282.7 168 88.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 8.0e-67 260.8 416 38.5
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 3.0e-58 232.3 325 41.5
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 1.1e-55 223.8 164 65.9
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.9e-39 169.9 232 44.4
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 3.6e-35 155.6 133 56.4
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 4.7e-35 155.2 272 37.1
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 8.9e-34 151.0 127 63.0
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 3.4e-33 149.1 224 39.7
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 4.9e-32 145.2 119 69.7
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 3.2e-31 142.5 101 65.3
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 1.3e-29 137.1 224 35.3
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.9e-28 133.3 299 32.1
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.3e-28 132.5 214 37.4
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 5.6e-28 131.7 154 48.1
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 9.5e-28 131.0 457 25.8
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.8e-27 129.4 106 62.3
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 8.9e-26 124.4 130 54.6
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 2.0e-25 123.2 115 55.7
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 2.6e-25 122.9 123 52.0
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 1.4e-23 117.1 167 44.3
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 3.2e-23 115.9 109 60.6
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 2.1e-22 113.2 163 39.3
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 3.0e-21 109.4 164 40.2
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 3.0e-21 109.4 128 46.1
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 1.5e-20 107.1 178 37.1
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 9.6e-20 104.4 54 83.3
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 1.5e-17 97.1 131 45.0
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 7.6e-17 94.7 95 49.5
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 2.9e-16 92.8 161 44.1
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 4.9e-16 92.0 76 63.2
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 6.4e-16 91.7 86 54.7
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 7.1e-15 88.2 73 61.6
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 1.2e-14 87.4 137 41.6
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 6.0e-14 85.1 78 56.4
CARHR104430 Cardamine hirsuta HOM05D003492 ORTHO05D115953 7.8e-14 84.7 53 77.4
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 2.3e-13 83.2 133 39.8
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 3.9e-13 82.4 71 62.0
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 7.3e-12 78.2 58 70.7
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 9.6e-12 77.8 83 44.6
BcaB01g05925 Brassica carinata HOM05D003492 ORTHO05D092842 2.6e-09 69.7 62 61.3
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 2.6e-09 69.7 60 56.7
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.4e-09 68.9 101 41.6
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 9.9e-09 67.8 60 56.7
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 3.8e-08 65.9 73 49.3
Thhalv10015101m.g Eutrema salsugineum HOM05D003492 ORTHO05D196031 7.1e-07 61.6 31 93.5


User provided reference genes

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