Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.9e-239 832.0 396 100.0
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.5e-215 752.7 381 91.6
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 9.5e-215 750.0 385 91.7
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.8e-214 748.4 383 92.2
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 4.7e-214 747.7 384 90.9
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 4.7e-214 747.7 382 90.6
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 3.0e-213 745.0 384 90.4
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 5.2e-213 744.2 383 90.1
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 6.3e-211 737.3 382 89.8
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 6.3e-211 737.3 384 89.3
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 2.4e-210 735.3 382 89.5
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-210 735.3 385 89.6
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 4.5e-209 731.1 377 89.4
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.4e-202 708.8 383 88.5
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 4.1e-202 708.0 382 87.4
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 5.0e-200 701.0 412 80.6
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 7.3e-191 670.6 384 83.3
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 2.0e-188 662.5 372 80.4
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.6e-177 626.3 370 75.9
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.6e-177 626.3 375 74.7
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.0e-176 623.6 376 74.5
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.5e-175 619.8 366 76.2
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 5.6e-175 617.8 376 73.9
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 7.3e-175 617.5 381 73.8
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 7.3e-175 617.5 373 73.5
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 2.8e-174 615.5 369 75.1
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 2.8e-174 615.5 370 75.1
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.7e-174 614.8 370 74.6
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 6.2e-174 614.4 376 73.1
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.4e-173 613.2 367 74.1
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.8e-173 612.8 369 74.5
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.8e-173 612.8 369 75.3
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 2.4e-173 612.5 372 74.5
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 2.4e-173 612.5 371 74.1
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 3.1e-173 612.1 366 76.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 5.2e-173 611.3 369 74.3
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 5.2e-173 611.3 366 75.4
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 6.9e-173 610.9 369 74.5
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 1.5e-172 609.8 368 73.9
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 4.4e-172 608.2 366 75.7
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 9.9e-172 607.1 377 72.9
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.7e-171 606.3 370 73.8
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 2.2e-171 605.9 365 74.8
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.2e-171 605.9 370 73.8
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 2.2e-171 605.9 377 72.7
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 2.9e-171 605.5 371 74.1
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 2.9e-171 605.5 368 74.7
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 4.9e-171 604.7 366 74.3
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.4e-171 604.4 366 72.4
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 8.4e-171 604.0 370 74.1
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 8.4e-171 604.0 366 74.0
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 8.4e-171 604.0 369 74.3
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.1e-170 603.6 365 74.2
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.1e-170 603.6 366 74.0
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 1.4e-170 603.2 365 74.5
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.4e-170 602.4 366 75.7
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.4e-170 602.4 369 73.7
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 3.2e-170 602.1 383 70.5
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 3.2e-170 602.1 367 74.4
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 3.2e-170 602.1 368 73.6
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 9.3e-170 600.5 366 73.0
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.2e-169 600.1 366 72.1
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.6e-169 599.7 374 73.5
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.1e-169 599.4 369 73.7
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 2.7e-169 599.0 368 74.5
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 2.7e-169 599.0 376 71.8
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 6.0e-169 597.8 367 73.3
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.0e-168 597.0 372 74.2
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 3.9e-168 595.1 366 74.9
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.9e-168 595.1 384 71.4
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 3.9e-168 595.1 371 72.0
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 5.1e-168 594.7 369 71.5
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 6.6e-168 594.3 366 73.0
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 6.6e-168 594.3 371 71.4
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.9e-167 592.8 376 71.3
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.9e-167 592.8 365 72.3
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 3.3e-167 592.0 365 72.1
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.3e-166 590.1 375 70.4
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.3e-166 590.1 365 71.8
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.6e-166 589.7 366 73.0
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 6.2e-166 587.8 366 72.1
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 6.2e-166 587.8 367 73.0
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 8.1e-166 587.4 369 70.7
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 2.4e-165 585.9 368 72.3
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 3.1e-165 585.5 371 70.1
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 6.9e-165 584.3 372 71.0
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.2e-164 583.6 367 72.8
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.0e-164 582.8 365 72.9
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 2.0e-164 582.8 375 70.4
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 3.4e-164 582.0 365 73.2
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 4.5e-164 581.6 366 71.0
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 2.4e-162 575.9 373 68.9
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.0e-160 570.5 369 69.1
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.3e-160 570.1 432 63.0
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 6.7e-160 567.8 371 68.2
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.1e-159 567.0 344 73.3
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.1e-159 567.0 395 66.8
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 9.6e-159 563.9 455 59.3
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.4e-157 559.3 369 68.6
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 5.3e-157 558.1 374 67.4
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 6.9e-157 557.8 380 68.2
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 2.0e-156 556.2 352 70.2
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 1.1e-154 550.4 366 68.0
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.2e-153 547.0 373 68.4
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.0e-152 543.9 371 66.8
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 9.6e-151 537.3 375 65.9
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.3e-150 537.0 320 74.1
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 2.8e-150 535.8 366 65.3
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 4.8e-150 535.0 366 67.8
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 5.3e-149 531.6 368 64.4
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.0e-148 529.6 403 62.5
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 2.6e-148 529.3 284 85.9
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 3.4e-148 528.9 370 66.5
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 7.6e-148 527.7 367 64.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 6.3e-142 508.1 373 63.0
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.3e-139 500.4 366 62.0
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 7.9e-137 491.1 308 72.7
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 1.0e-136 490.7 413 59.1
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.1e-130 470.7 294 70.7
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 4.4e-127 458.8 365 60.8
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 5.9e-124 448.4 384 56.5
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 5.7e-103 378.6 381 50.1
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 4.7e-97 359.0 342 53.2
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.0e-96 355.9 221 73.3
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.5e-95 354.0 382 45.3
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.4e-93 345.5 250 63.6
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 5.9e-92 342.0 379 45.4
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.3e-88 330.1 228 66.7
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.9e-86 322.4 220 65.9
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 1.0e-83 314.7 404 42.1
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 9.5e-82 308.1 365 44.7
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.2e-80 302.4 204 66.2
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-73 280.4 164 72.6
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 3.5e-68 263.1 165 68.5
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 2.7e-60 236.9 171 67.3
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.4e-48 198.0 110 86.4
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 4.0e-48 196.4 100 92.0
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 5.3e-48 196.1 475 29.7
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 3.3e-42 176.8 93 82.8
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.6e-33 147.9 134 59.7
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 3.9e-27 126.7 82 73.2
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.1e-24 118.6 93 62.4
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 3.2e-21 107.1 346 26.0
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 1.7e-14 84.7 43 86.0
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 5.5e-13 79.7 71 53.5
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 5.5e-13 79.7 163 30.1
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 9.4e-13 79.0 47 74.5
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 4.7e-12 76.6 47 70.2
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 2.8e-09 67.4 40 75.0
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 2.4e-08 64.3 32 87.5
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 2.4e-08 64.3 32 87.5


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