Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.7e-184 648.7 357 100.0
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.9e-150 536.2 355 83.9
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.1e-148 530.4 342 85.1
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.8e-148 529.6 355 80.8
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.2e-146 522.7 360 79.7
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.2e-146 522.7 360 79.7
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.9e-146 522.3 355 81.7
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 1.0e-143 513.8 339 84.1
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 3.9e-143 511.9 358 81.0
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 7.4e-142 507.7 338 83.1
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 4.5e-139 498.4 341 80.9
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.9e-134 483.0 340 77.1
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.5e-134 482.6 357 75.1
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.9e-130 469.2 360 73.6
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.1e-129 467.2 340 75.6
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 7.2e-129 464.5 360 72.5
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.1e-128 463.0 347 76.4
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.5e-110 403.7 349 69.3
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 8.0e-104 381.3 335 64.2
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.2e-102 377.5 360 61.9
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.5e-102 377.1 363 60.9
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.6e-102 376.3 333 63.1
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.7e-101 372.5 333 64.0
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.8e-101 372.1 355 60.3
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 6.3e-101 371.7 262 73.3
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.8e-100 370.2 311 66.2
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 3.1e-100 369.4 354 58.8
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 5.3e-100 368.6 264 72.7
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 5.3e-100 368.6 273 70.3
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.2e-99 367.5 266 72.2
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.2e-99 367.5 262 72.1
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.2e-99 367.5 264 72.7
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.6e-99 367.1 267 71.2
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.0e-99 366.7 254 72.4
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.0e-99 366.7 254 72.4
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.7e-99 366.3 325 63.4
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 4.5e-99 365.5 274 69.7
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.3e-98 364.0 257 73.2
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.3e-98 364.0 350 60.0
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.3e-98 364.0 279 70.6
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-98 364.0 328 60.4
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 2.2e-98 363.2 322 63.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 3.8e-98 362.5 255 72.9
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 5.0e-98 362.1 265 70.6
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 6.5e-98 361.7 260 72.7
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 6.5e-98 361.7 306 65.7
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.1e-97 360.9 341 61.6
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.1e-97 360.9 249 73.9
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.9e-97 360.1 263 67.7
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 3.2e-97 359.4 257 72.0
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 4.2e-97 359.0 327 62.4
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 7.2e-97 358.2 261 70.5
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 7.2e-97 358.2 259 71.8
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-96 357.5 245 73.9
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.6e-96 357.1 257 70.0
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.7e-96 356.3 307 64.8
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 3.6e-96 355.9 349 57.9
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 3.6e-96 355.9 341 61.3
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 3.6e-96 355.9 256 71.1
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 4.7e-96 355.5 260 70.0
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 4.7e-96 355.5 258 69.0
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.0e-95 354.4 251 71.7
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.4e-95 354.0 319 61.4
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.2e-94 350.9 265 68.7
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.5e-94 350.5 351 58.4
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.5e-94 350.5 352 56.8
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 4.4e-94 349.0 288 64.9
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 5.7e-94 348.6 278 66.5
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 5.7e-94 348.6 317 61.5
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 5.7e-94 348.6 322 58.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 5.7e-94 348.6 319 61.4
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 7.5e-94 348.2 307 62.5
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 7.5e-94 348.2 266 67.3
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 9.8e-94 347.8 288 64.6
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.3e-93 347.4 251 68.9
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 1.3e-93 347.4 322 59.3
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 2.2e-93 346.7 299 62.2
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 2.2e-93 346.7 255 68.2
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 6.3e-93 345.1 259 69.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.4e-92 344.0 267 67.4
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 1.8e-92 343.6 256 69.9
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 4.1e-92 342.4 239 72.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 7.0e-92 341.7 249 70.7
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 9.1e-92 341.3 255 68.6
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.7e-91 339.7 266 66.2
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 4.5e-91 339.0 263 66.9
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 3.8e-90 335.9 327 58.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 5.0e-90 335.5 330 56.7
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 6.5e-90 335.1 318 58.5
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 8.5e-90 334.7 337 57.6
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.1e-89 334.3 239 69.5
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.5e-89 334.0 239 69.0
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.9e-89 333.6 273 64.5
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.6e-88 330.5 252 65.1
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.8e-88 329.7 273 63.4
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.4e-84 317.4 286 60.8
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.5e-81 307.4 325 53.5
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 8.0e-80 301.6 279 64.2
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 7.3e-73 278.5 199 70.9
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.6e-70 270.0 314 51.3
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 8.3e-69 265.0 256 57.4
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-68 264.6 279 50.9
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.5e-67 259.6 264 51.5
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 6.0e-67 258.8 287 49.8
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.2e-64 251.1 267 53.6
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 6.8e-55 218.8 248 47.6
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 8.9e-55 218.4 222 54.1
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.5e-54 217.6 166 68.7
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.4e-54 216.5 134 77.6
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.3e-49 199.9 177 62.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 2.4e-47 193.7 118 83.1
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 8.4e-45 185.3 199 54.3
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.3e-42 177.9 178 57.9
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 3.9e-42 176.4 208 52.9
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.6e-40 171.0 181 52.5
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 4.9e-37 159.5 161 55.3
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 4.2e-36 156.4 174 55.7
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.1e-35 154.1 111 72.1
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 6.0e-35 152.5 120 66.7
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.9e-33 147.5 179 50.3
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.5e-27 126.7 121 58.7
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 4.6e-27 126.3 104 62.5
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 6.0e-27 125.9 94 67.0
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 8.7e-26 122.1 80 75.0
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.1e-25 121.7 74 78.4
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.8e-24 117.1 120 52.5
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 2.4e-23 114.0 244 31.6
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 2.5e-20 104.0 160 50.0
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.0e-18 98.6 91 58.2
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.8e-18 97.8 90 51.1
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.3e-17 93.6 218 35.8
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.6e-16 91.3 56 80.4
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 2.8e-16 90.5 67 67.2
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 2.8e-16 90.5 50 80.0
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 2.4e-15 87.4 146 39.7
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.4e-14 83.6 55 72.7
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.5e-14 83.2 162 35.8
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 8.5e-13 79.0 96 51.0
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.6e-11 74.7 92 47.8
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.7e-11 73.9 149 34.9
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 1.9e-09 67.8 61 62.3
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 3.3e-09 67.0 209 28.7
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.4e-07 61.6 38 71.1
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 5.3e-07 59.7 80 43.8


User provided reference genes

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