Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 6.2e-280 966.8 495 100.0
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 6.4e-237 823.9 478 87.2
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 3.9e-234 814.7 479 86.8
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.2e-227 793.1 488 83.6
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 3.5e-227 791.6 481 83.4
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 2.3e-226 788.9 519 79.8
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 5.1e-226 787.7 529 77.9
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 3.2e-220 768.5 477 83.0
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 1.3e-218 763.1 495 79.8
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 5.1e-218 761.1 467 83.7
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 3.7e-216 755.0 487 79.3
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.1e-187 659.4 467 69.8
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 4.0e-178 628.6 473 66.6
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 4.3e-148 528.9 481 56.3
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 1.7e-144 516.9 471 55.4
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 2.9e-144 516.2 472 54.4
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 4.1e-143 512.3 472 54.2
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 7.8e-142 508.1 469 53.9
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 1.3e-141 507.3 471 55.2
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 3.0e-141 506.1 472 54.2
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 1.8e-138 496.9 472 53.2
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 5.8e-137 491.9 479 53.0
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 1.7e-136 490.3 469 52.5
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 2.9e-136 489.6 469 52.2
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 2.9e-136 489.6 477 53.7
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 4.9e-136 488.8 474 53.2
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.9e-135 486.9 471 53.3
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 3.2e-135 486.1 474 53.0
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 1.6e-134 483.8 483 52.2
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 8.1e-131 471.5 474 51.5
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 1.8e-130 470.3 473 50.7
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 3.1e-130 469.5 481 50.7
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 9.0e-130 468.0 471 53.1
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 9.0e-130 468.0 477 51.8
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 2.6e-129 466.5 477 51.4
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 7.6e-129 464.9 476 50.8
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 9.9e-129 464.5 476 49.4
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 3.8e-128 462.6 492 48.8
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 3.8e-128 462.6 471 49.7
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 2.4e-127 459.9 462 51.1
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 1.6e-126 457.2 503 49.5
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 2.7e-126 456.4 449 51.9
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 2.7e-126 456.4 498 48.2
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 3.5e-126 456.1 476 52.5
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 7.9e-126 454.9 472 52.3
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.0e-125 454.5 465 49.5
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 3.9e-125 452.6 472 47.9
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 5.1e-125 452.2 473 49.5
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.5e-124 450.7 477 49.1
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.3e-123 447.6 470 49.6
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 3.7e-123 446.0 473 50.3
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 3.7e-123 446.0 472 47.7
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 4.0e-122 442.6 471 46.9
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 5.3e-122 442.2 472 51.3
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 5.3e-122 442.2 520 46.2
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.7e-120 437.2 459 48.1
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 1.9e-119 433.7 471 48.0
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 4.2e-119 432.6 477 48.2
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.6e-118 430.6 471 47.1
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 5.3e-114 415.6 528 44.9
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 1.7e-112 410.6 481 45.3
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 8.4e-112 408.3 480 47.3
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 8.4e-112 408.3 389 51.9
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 3.2e-111 406.4 480 46.0
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 9.3e-111 404.8 388 53.9
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.9e-109 399.4 459 46.8
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 3.3e-108 396.4 509 41.8
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 5.7e-108 395.6 465 46.0
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 2.8e-107 393.3 478 45.6
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 9.0e-106 388.3 387 49.4
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.3e-104 384.4 478 44.6
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 1.7e-104 384.0 472 43.4
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 5.0e-104 382.5 481 45.3
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 6.5e-104 382.1 458 48.5
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.2e-103 379.8 519 42.2
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 3.9e-101 372.9 387 50.1
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.1e-100 371.3 568 39.6
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 9.7e-100 368.2 471 43.9
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 6.9e-98 362.1 379 49.6
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 1.3e-96 357.8 474 44.9
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.7e-96 357.5 436 45.6
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.2e-96 357.1 509 39.7
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.7e-91 340.9 455 41.5
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 2.6e-89 333.6 499 39.3
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 1.9e-87 327.4 329 47.4
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 2.7e-86 323.6 459 39.0
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 2.9e-80 303.5 326 44.2
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 3.8e-80 303.1 311 50.8
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 6.7e-77 292.4 473 36.8
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 8.8e-77 292.0 255 55.7
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 1.1e-71 275.0 498 34.7
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 1.5e-68 264.6 325 48.6
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 5.0e-64 249.6 282 43.3
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 5.5e-63 246.1 293 44.4
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.2e-62 245.0 288 43.8
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 8.0e-62 242.3 503 31.0
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 3.7e-59 233.4 284 42.3
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 1.2e-52 211.8 186 55.4
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.7e-51 208.0 173 59.5
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 5.4e-50 203.0 301 40.5
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 3.3e-47 193.7 228 46.1
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.2e-44 185.3 189 50.3
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.2e-44 185.3 135 63.7
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 2.2e-43 181.0 471 30.1
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.0e-40 172.2 190 43.7
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 1.4e-34 151.8 186 43.5
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 3.9e-32 143.7 166 44.6
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.1e-26 125.6 130 49.2
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 9.2e-26 122.5 352 25.0
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 4.3e-23 113.6 191 35.1
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 3.1e-21 107.5 91 58.2
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 4.9e-19 100.1 90 53.3
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 5.4e-18 96.7 283 33.9
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 3.9e-16 90.5 151 38.4
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 8.7e-16 89.4 362 28.5
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.1e-14 84.7 53 67.9
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 2.2e-11 74.7 130 36.2
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 5.4e-10 70.1 78 44.9
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.5e-07 62.0 57 45.6
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 4.8e-06 57.0 57 47.4
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 6.2e-06 56.6 94 36.2


User provided reference genes

Program Settings