Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 0.0e+00 1438.3 735 100.0
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 0.0e+00 1314.3 735 91.2
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 0.0e+00 1283.1 736 89.0
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 0.0e+00 1269.6 736 88.2
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 0.0e+00 1262.7 735 87.9
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 0.0e+00 1249.6 736 87.2
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 0.0e+00 1245.7 730 87.4
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 0.0e+00 1229.5 703 89.0
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 0.0e+00 1229.5 789 81.2
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 0.0e+00 1212.6 731 85.5
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 0.0e+00 1198.7 784 80.4
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 0.0e+00 1099.7 753 78.1
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.2e-279 966.5 741 68.7
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 1.1e-221 773.9 748 55.7
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 7.4e-221 771.2 748 54.9
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 1.8e-214 750.0 752 54.1
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 6.7e-214 748.0 750 52.9
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 3.7e-212 742.3 739 53.0
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 1.1e-211 740.7 738 54.2
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.8e-211 740.0 738 53.9
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 7.6e-210 734.6 750 54.0
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 2.2e-209 733.0 748 53.2
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.2e-208 729.2 739 52.8
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 9.7e-205 717.6 745 52.3
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 5.3e-203 711.8 752 50.9
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 4.5e-202 708.8 654 56.1
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 5.9e-202 708.4 710 53.8
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 3.9e-198 695.7 734 51.6
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 6.9e-195 684.9 724 51.1
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 9.1e-195 684.5 738 50.9
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 4.5e-194 682.2 713 51.1
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.2e-192 676.0 756 49.6
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 5.5e-192 675.2 749 49.1
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 1.8e-190 670.2 750 49.5
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.8e-190 670.2 750 49.7
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 5.7e-189 665.2 809 47.1
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 1.4e-187 660.6 749 48.5
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 2.0e-186 656.8 741 47.8
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 3.4e-186 656.0 755 47.8
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 7.7e-186 654.8 757 47.6
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 1.3e-185 654.1 750 47.5
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 3.8e-185 652.5 723 49.9
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.4e-184 650.6 736 47.4
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 1.2e-183 647.5 785 47.5
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 8.0e-183 644.8 817 45.8
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 4.4e-181 639.0 779 46.9
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 4.8e-180 635.6 740 48.4
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 1.4e-179 634.0 711 48.9
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 9.1e-179 631.3 726 49.0
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 4.5e-178 629.0 750 47.9
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 3.8e-177 625.9 726 48.3
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 1.9e-176 623.6 726 48.1
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 7.2e-176 621.7 750 47.3
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 3.6e-175 619.4 726 47.1
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 1.4e-174 617.5 686 48.7
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 4.0e-174 615.9 728 46.7
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.5e-173 614.0 760 47.2
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 7.5e-173 611.7 646 50.2
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.4e-171 606.7 708 47.6
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 7.0e-171 605.1 725 45.8
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.2e-170 604.4 749 47.0
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 3.8e-169 599.4 765 45.5
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 5.0e-169 599.0 701 47.9
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 3.2e-168 596.3 708 47.5
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 2.8e-164 583.2 742 43.8
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 3.7e-164 582.8 756 44.6
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 8.3e-164 581.6 727 45.8
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.0e-162 577.0 730 46.0
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 1.7e-161 573.9 734 43.5
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 6.6e-161 572.0 729 44.3
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.2e-160 569.3 741 44.8
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 9.5e-160 568.2 613 50.1
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 1.2e-159 567.8 720 44.4
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 2.8e-159 566.6 750 44.0
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 2.4e-155 553.5 722 42.7
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 6.1e-151 538.9 740 40.4
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 4.0e-150 536.2 743 41.5
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 2.0e-149 533.9 707 45.1
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 4.1e-147 526.2 720 40.6
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 8.1e-135 485.3 587 44.8
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 3.5e-130 469.9 675 39.3
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 8.4e-124 448.7 509 46.6
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.4e-123 448.0 457 52.5
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.1e-118 431.8 587 43.4
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 3.1e-118 430.3 558 45.0
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 2.0e-117 427.6 566 44.2
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.3e-116 424.9 404 54.2
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 9.6e-112 408.7 428 49.3
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.6e-111 407.9 341 58.4
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.8e-110 404.4 579 42.5
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.4e-110 404.1 739 35.9
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 4.0e-110 403.3 455 48.1
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 9.0e-110 402.1 424 50.2
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.0e-97 362.1 352 52.6
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 6.7e-97 359.4 808 31.8
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 2.5e-96 357.5 677 33.4
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 5.3e-94 349.7 371 50.4
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 3.5e-90 337.0 357 49.3
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 2.4e-86 324.3 547 37.1
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 1.5e-85 321.6 298 51.3
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 3.4e-85 320.5 676 32.7
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 9.4e-83 312.4 861 28.0
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.2e-82 312.0 277 57.0
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 4.1e-78 297.0 369 44.7
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 5.1e-73 280.0 327 47.1
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 2.8e-71 274.2 266 55.6
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.6e-66 258.5 492 34.8
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 4.7e-66 256.9 248 54.0
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.6e-61 241.9 197 63.5
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 4.5e-61 240.4 891 24.8
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 2.0e-56 224.9 704 30.3
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 5.5e-51 206.8 199 53.8
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 2.1e-50 204.9 705 28.1
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 4.7e-50 203.8 159 64.2
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 6.1e-50 203.4 162 61.1
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 2.4e-46 191.4 276 39.9
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 4.1e-46 190.7 159 62.3
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 1.5e-40 172.2 260 37.7
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.0e-40 171.8 136 65.4
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.3e-27 127.9 104 55.8
Sp6g11530 Schrenkiella parvula HOM05D001244 ORTHO05D001076 4.7e-26 124.0 185 45.9
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 6.8e-25 120.2 98 62.2
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 1.9e-22 112.1 149 43.6
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 5.1e-20 104.0 163 36.8
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 1.6e-10 72.4 175 32.6
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 2.0e-08 65.5 285 27.4
Sp6g00470 Schrenkiella parvula HOM05D001244 ORTHO05D001076 3.4e-08 64.7 38 92.1
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 7.6e-08 63.5 113 31.9
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 1.3e-07 62.8 45 62.2
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.3e-07 62.8 34 82.4
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 1.3e-07 62.8 131 34.4


User provided reference genes

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