Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 0.0e+00 1256.5 651 100.0
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 0.0e+00 1157.1 651 92.8
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 0.0e+00 1151.3 649 91.8
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 0.0e+00 1140.2 649 91.2
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 0.0e+00 1139.8 650 91.2
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 0.0e+00 1130.5 649 89.8
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 0.0e+00 1124.8 654 88.8
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 0.0e+00 1122.8 648 90.0
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 0.0e+00 1119.8 651 89.1
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 0.0e+00 1119.4 654 88.4
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 1.2e-294 1016.1 656 81.1
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 1.6e-256 889.4 655 73.4
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.6e-225 785.8 664 64.2
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.3e-224 783.5 664 64.0
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 2.0e-222 776.2 659 62.5
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 1.0e-221 773.9 670 63.9
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 3.8e-221 771.9 665 63.6
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 1.0e-218 763.8 659 60.8
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 4.0e-218 761.9 672 60.3
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 4.0e-218 761.9 662 60.9
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.8e-216 755.7 662 60.0
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 6.3e-216 754.6 663 62.3
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 1.6e-214 750.0 660 61.1
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 3.5e-214 748.8 662 60.1
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.0e-213 747.3 666 59.9
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 3.8e-213 745.3 659 61.6
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 5.0e-213 745.0 655 60.8
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 7.2e-212 741.1 660 61.5
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.6e-211 740.0 671 61.4
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 2.1e-211 739.6 659 61.5
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 8.0e-211 737.6 668 61.1
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.8e-210 736.5 671 61.1
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 1.2e-209 733.8 661 59.3
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 9.8e-209 730.7 664 61.1
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 1.4e-207 726.9 659 61.8
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.8e-207 726.5 661 57.9
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 9.1e-207 724.2 663 58.7
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 3.5e-206 722.2 662 59.4
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.9e-205 719.2 663 58.5
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.1e-204 717.2 658 58.5
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 2.5e-204 716.1 668 60.5
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 5.5e-204 714.9 663 59.1
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.2e-203 713.8 667 58.2
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 1.6e-203 713.4 658 59.0
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 2.8e-203 712.6 658 58.8
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 1.0e-202 710.7 657 58.4
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 3.0e-202 709.1 655 59.8
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 8.8e-202 707.6 654 59.8
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.2e-201 707.2 670 57.9
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 5.7e-201 704.9 668 57.8
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 4.9e-200 701.8 664 57.4
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.4e-199 700.3 678 55.6
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.4e-199 700.3 678 55.6
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 3.1e-199 699.1 661 57.8
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 4.5e-198 695.3 656 58.4
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 2.9e-197 692.6 661 58.1
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 3.8e-197 692.2 658 57.9
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.5e-196 690.3 754 52.0
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 3.3e-196 689.1 653 57.6
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 3.3e-196 689.1 663 56.9
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 5.6e-196 688.3 655 56.9
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 7.3e-196 688.0 665 55.3
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 9.5e-196 687.6 659 56.4
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 1.2e-195 687.2 665 55.8
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.2e-195 687.2 637 58.2
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 2.3e-194 682.9 657 58.1
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 3.4e-193 679.1 667 55.2
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 7.5e-193 677.9 671 55.4
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 7.5e-193 677.9 918 44.8
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 1.4e-191 673.7 684 55.0
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 5.4e-191 671.8 672 57.0
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 5.4e-191 671.8 662 56.9
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 1.6e-190 670.2 656 57.2
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 5.9e-190 668.3 664 58.0
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 5.9e-190 668.3 626 57.5
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 1.0e-189 667.5 663 54.4
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 1.3e-189 667.2 654 55.5
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 6.6e-189 664.8 663 54.8
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 8.6e-189 664.5 634 57.3
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 8.6e-189 664.5 655 56.3
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 4.3e-188 662.1 653 55.0
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 4.7e-187 658.7 645 55.5
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 8.0e-187 657.9 671 56.5
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 1.8e-186 656.8 628 56.1
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 6.8e-186 654.8 665 54.3
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 3.4e-185 652.5 667 54.0
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 4.3e-180 635.6 656 52.0
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 3.6e-179 632.5 589 58.7
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 3.1e-178 629.4 743 48.5
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.3e-173 613.2 650 51.4
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 6.6e-173 611.7 648 51.1
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 6.6e-165 585.1 715 49.0
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 2.5e-164 583.2 664 48.3
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 2.2e-160 570.1 657 47.8
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 4.9e-160 568.9 620 49.4
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 1.3e-155 554.3 660 46.1
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 3.3e-148 529.6 664 45.0
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 4.3e-148 529.3 680 47.9
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 3.1e-146 523.1 492 59.6
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 6.7e-141 505.4 662 42.7
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 5.5e-135 485.7 712 40.0
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 4.1e-130 469.5 557 47.2
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 2.5e-127 460.3 647 41.6
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 2.0e-121 440.7 521 46.6
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 6.1e-110 402.5 538 44.6
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 5.7e-92 342.8 297 61.6
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 4.1e-82 310.1 531 38.8
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 3.8e-80 303.5 707 32.1
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 5.6e-79 299.7 410 44.6
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 3.6e-78 297.0 655 32.1
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 2.7e-73 280.8 643 30.6
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.6e-57 226.9 165 70.3
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 3.1e-45 187.6 477 31.0
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 5.8e-44 183.3 138 70.3
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 1.5e-36 158.7 136 61.8
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.9e-31 141.7 342 34.2
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.3e-30 139.0 100 79.0
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 4.8e-30 137.1 153 49.0
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 1.1e-26 125.9 301 37.5
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.6e-25 122.1 178 46.1
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.1e-15 89.4 50 82.0
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 7.4e-15 86.7 101 44.6
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.8e-13 82.0 127 38.6
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 7.7e-12 76.6 58 58.6
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 2.2e-11 75.1 66 51.5
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 2.5e-10 71.6 49 71.4
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 4.3e-07 60.8 37 78.4
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 5.7e-07 60.5 70 42.9
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 9.7e-07 59.7 37 78.4


User provided reference genes

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