Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 5.5e-290 1000.3 538 100.0
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 9.7e-263 909.8 536 90.1
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.4e-232 809.7 538 81.8
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 2.3e-232 808.9 539 81.4
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 4.4e-231 804.7 532 80.6
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 9.8e-231 803.5 539 79.4
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.7e-230 802.7 533 79.9
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 4.9e-230 801.2 533 79.7
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 2.3e-227 792.3 536 79.5
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 1.2e-225 786.6 544 80.0
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 6.0e-220 767.7 530 77.4
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.0e-219 766.9 530 77.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 9.2e-205 717.2 533 72.8
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 9.6e-194 680.6 543 70.5
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 1.6e-177 626.7 521 65.3
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.8e-176 623.2 523 67.5
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 3.4e-167 592.4 476 67.6
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.2e-135 487.6 524 51.5
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.2e-135 487.6 544 52.6
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 5.0e-134 482.3 524 50.6
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.6e-132 477.2 509 56.2
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.7e-132 476.5 553 50.3
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.8e-131 473.8 551 50.1
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 2.3e-131 473.4 556 50.2
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 3.0e-131 473.0 557 51.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.0e-130 470.3 546 48.7
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.6e-130 469.9 546 51.5
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.3e-129 467.6 546 48.4
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.7e-129 467.2 524 49.4
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.7e-129 467.2 534 50.9
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 2.8e-129 466.5 532 49.8
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 2.8e-129 466.5 543 50.3
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 2.4e-128 463.4 534 49.8
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 4.1e-128 462.6 554 47.3
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 5.4e-128 462.2 554 47.1
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 9.1e-128 461.5 539 49.4
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.0e-127 460.3 539 49.4
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 7.7e-127 458.4 527 50.7
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.2e-126 456.8 534 49.4
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 6.5e-126 455.3 531 49.7
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.5e-125 453.4 551 48.3
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 2.5e-125 453.4 519 50.3
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 3.2e-125 453.0 537 51.0
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 6.1e-124 448.7 542 49.6
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 1.4e-123 447.6 564 46.8
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.4e-123 447.6 547 48.3
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.8e-123 447.2 529 50.1
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 4.0e-123 446.0 533 46.0
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.0e-123 446.0 533 46.0
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.0e-123 446.0 530 47.2
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.0e-123 446.0 548 47.3
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 4.0e-123 446.0 547 48.3
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 5.2e-123 445.7 542 51.1
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.5e-122 444.1 534 46.3
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.6e-122 443.4 567 47.1
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 2.6e-122 443.4 586 46.8
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.7e-122 442.2 539 46.2
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 2.2e-121 440.3 543 48.3
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 2.2e-121 440.3 544 48.0
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 7.0e-120 435.3 537 49.9
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.2e-119 434.5 550 47.1
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 2.0e-119 433.7 537 47.7
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 2.7e-119 433.3 567 47.6
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 6.6e-118 428.7 528 50.6
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.1e-117 427.9 551 46.8
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.5e-117 427.6 554 45.8
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 3.3e-117 426.4 473 50.3
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.8e-116 423.3 554 44.4
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 4.4e-114 416.0 558 48.2
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.7e-113 414.1 564 44.1
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 1.8e-112 410.6 549 47.0
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 9.2e-112 408.3 551 45.6
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 9.2e-112 408.3 530 47.7
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.3e-110 403.7 561 48.0
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 2.9e-110 403.3 560 44.6
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 8.6e-110 401.7 560 47.3
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.5e-109 401.0 574 42.9
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.9e-109 400.6 435 51.7
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 2.5e-109 400.2 529 47.4
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 4.0e-107 392.9 564 42.7
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.9e-105 386.7 552 42.2
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.1e-104 384.8 570 43.5
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.1e-104 382.9 563 41.4
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 4.1e-104 382.9 559 42.8
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 9.2e-104 381.7 522 43.9
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.3e-102 377.9 557 42.9
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 6.6e-102 375.6 621 38.0
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.9e-101 374.0 571 42.7
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 9.5e-101 371.7 552 42.8
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.6e-100 369.8 600 41.5
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.4e-99 367.9 579 39.7
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 2.3e-99 367.1 564 41.7
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 4.0e-99 366.3 577 42.1
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 5.2e-99 365.9 554 42.1
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 6.8e-99 365.5 477 45.9
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 8.9e-99 365.2 576 40.8
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.2e-98 364.8 560 41.8
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.3e-97 361.3 594 42.1
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.4e-96 357.1 229 77.3
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 5.4e-96 355.9 302 57.3
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 3.5e-95 353.2 519 43.5
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.0e-94 351.7 324 54.3
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.7e-94 350.9 498 45.8
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 3.9e-94 349.7 565 40.9
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.1e-92 344.0 590 41.4
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.5e-90 337.8 511 43.8
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 4.4e-90 336.3 446 45.1
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 2.2e-89 334.0 567 40.0
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 7.3e-85 318.9 567 38.8
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 4.7e-84 316.2 588 35.7
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 6.8e-83 312.4 416 41.8
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 8.9e-83 312.0 504 41.1
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 9.3e-80 302.0 701 32.8
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.8e-79 298.9 641 32.8
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.3e-78 297.4 547 35.8
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 5.1e-78 296.2 537 36.3
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 1.0e-70 271.9 409 43.3
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.1e-68 264.2 536 32.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.4e-59 234.2 634 30.4
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 2.5e-56 224.2 270 45.9
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.5e-53 214.9 650 27.4
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 7.4e-53 212.6 544 30.5
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.3e-52 211.8 489 35.2
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.1e-48 198.7 415 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 7.9e-47 192.6 669 26.9
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 7.9e-47 192.6 328 33.2
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 7.7e-42 176.0 180 49.4
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 7.2e-40 169.5 460 28.0
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 4.5e-34 150.2 141 53.2
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.0e-33 149.1 286 32.5
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 4.2e-32 143.7 273 33.3
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 9.1e-27 125.9 134 51.5
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 9.1e-27 125.9 153 49.7
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 3.6e-23 114.0 168 41.1
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 5.2e-22 110.2 263 28.1
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 4.8e-20 103.6 81 58.0
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.8e-20 103.6 81 58.0
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 3.8e-17 94.0 164 34.8
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.4e-14 85.5 135 37.0
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 9.8e-13 79.3 130 38.5
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 5.5e-08 63.5 104 35.6
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 1.4e-06 58.9 73 43.8


User provided reference genes

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