Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 0.0e+00 1252.7 668 100.0
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 0.0e+00 1182.5 667 92.8
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 0.0e+00 1172.1 667 92.1
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 0.0e+00 1171.0 669 92.2
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 0.0e+00 1160.6 669 92.5
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 0.0e+00 1151.0 669 90.7
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 0.0e+00 1145.6 668 89.7
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 0.0e+00 1142.9 668 89.2
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 0.0e+00 1137.5 667 88.6
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 0.0e+00 1137.1 669 89.1
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.0e-297 1025.4 664 81.3
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 2.0e-270 935.6 663 73.6
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 5.0e-269 931.0 672 72.2
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 2.5e-268 928.7 671 72.4
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 8.1e-267 923.7 663 71.6
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.1e-266 923.3 661 72.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.2e-265 919.8 663 71.3
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 2.6e-265 918.7 668 71.9
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 7.5e-265 917.1 651 72.2
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 8.3e-264 913.7 663 71.6
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.4e-263 911.0 660 71.1
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.7e-262 908.7 661 71.9
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.7e-262 908.7 668 70.5
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 6.0e-262 907.5 664 71.4
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.3e-261 905.6 661 72.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 3.9e-261 904.8 668 71.3
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 5.1e-261 904.4 657 72.0
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 1.5e-260 902.9 664 70.0
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 4.7e-259 897.9 659 70.3
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 5.8e-257 891.0 662 69.8
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 2.9e-256 888.6 660 70.6
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 2.4e-255 885.6 664 69.3
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.6e-254 882.9 653 71.2
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 5.1e-253 877.9 664 69.4
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 8.7e-253 877.1 661 70.2
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 4.3e-252 874.8 663 69.2
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 5.6e-252 874.4 667 67.0
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.6e-251 872.8 672 67.1
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.6e-251 872.8 663 69.1
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 3.6e-251 871.7 661 69.0
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 8.1e-251 870.5 661 69.3
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.1e-250 870.2 660 68.5
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.4e-250 869.8 660 68.9
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 9.0e-250 867.1 660 68.5
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.2e-249 866.7 693 66.4
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.5e-249 866.3 665 67.5
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 3.8e-248 861.7 652 68.4
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 8.4e-248 860.5 661 69.3
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.9e-247 859.4 664 67.2
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 3.2e-247 858.6 655 68.1
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 4.2e-247 858.2 662 68.4
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 3.5e-246 855.1 658 67.3
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 6.0e-246 854.4 662 66.5
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.0e-245 853.6 645 68.2
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.0e-245 853.6 658 67.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.9e-244 849.4 661 66.4
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 3.3e-244 848.6 658 67.3
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 5.6e-244 847.8 669 66.4
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 2.8e-243 845.5 659 67.5
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 3.6e-243 845.1 663 67.3
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.4e-242 843.2 658 67.5
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 5.3e-242 841.3 658 66.4
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 2.6e-241 839.0 594 72.4
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 7.1e-239 830.9 648 67.7
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.6e-238 828.2 661 65.8
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.3e-237 826.6 696 63.4
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.3e-237 826.6 663 66.7
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.8e-237 826.2 696 63.6
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.1e-235 819.3 689 65.0
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.8e-235 818.9 668 64.8
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 8.1e-235 817.4 673 64.3
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.1e-234 815.5 656 65.2
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 5.3e-234 814.7 610 70.5
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.3e-229 799.3 661 64.6
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 2.3e-229 799.3 607 68.5
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 6.7e-229 797.7 643 66.6
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 4.3e-228 795.0 622 67.2
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 5.6e-228 794.7 664 63.0
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 7.4e-228 794.3 587 70.5
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 1.9e-223 779.6 731 59.9
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 7.1e-223 777.7 674 63.4
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 8.7e-221 770.8 663 63.8
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 8.7e-221 770.8 592 67.2
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 4.8e-211 738.4 874 50.1
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 6.5e-208 728.0 683 57.2
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 4.2e-207 725.3 665 60.5
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 8.8e-205 717.6 681 59.3
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 3.4e-201 705.7 658 57.8
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.4e-199 700.3 658 58.8
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 7.5e-188 661.4 513 66.7
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 1.9e-183 646.7 853 46.8
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.4e-181 640.6 476 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.0e-181 639.4 669 53.2
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.0e-173 612.5 573 56.9
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 8.9e-173 611.3 478 66.5
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.0e-158 561.6 605 51.9
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 2.3e-157 560.1 497 62.8
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.0e-156 557.0 580 52.6
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.1e-143 514.6 436 62.4
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 5.3e-133 479.2 437 58.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.0e-112 410.2 466 50.0
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 5.5e-106 389.4 345 60.3
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.6e-81 308.1 237 65.0
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.0e-80 303.9 319 53.0
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 7.0e-77 292.7 441 43.1
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 7.7e-68 262.7 205 68.8
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.0e-67 260.0 209 67.0
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 3.7e-62 243.8 377 42.2
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 5.4e-61 240.0 284 49.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.3e-59 234.6 180 66.7
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 5.5e-58 229.9 250 55.2
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.3e-51 208.0 174 60.9
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 5.2e-48 196.8 145 71.0
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 3.0e-43 181.0 168 60.7
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 9.8e-39 166.0 522 28.5
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 8.3e-38 162.9 95 85.3
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 3.5e-36 157.5 151 57.6
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.3e-35 155.6 132 65.2
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.5e-34 151.4 146 54.8
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 5.8e-31 140.2 79 86.1
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 8.4e-30 136.3 88 75.0
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 8.6e-27 126.3 94 72.3
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.1e-26 125.9 98 64.3
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.6e-25 122.1 153 44.4
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 6.8e-24 116.7 96 61.5
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 8.9e-24 116.3 164 42.7
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 9.9e-23 112.8 148 50.0
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 1.2e-20 105.9 83 68.7
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.6e-20 104.0 125 46.4
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 7.8e-20 103.2 162 39.5
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.3e-19 102.4 96 59.4
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.5e-18 99.0 54 88.9
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 5.6e-18 97.1 65 70.8
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 7.3e-18 96.7 84 59.5
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.0e-15 88.6 67 64.2
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 3.4e-15 87.8 50 78.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 3.4e-15 87.8 50 78.0
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 4.4e-15 87.4 90 57.8
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 4.9e-14 84.0 62 66.1
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.4e-13 82.4 60 65.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.0e-11 76.3 89 51.7
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.3e-09 69.3 65 46.2
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-08 63.5 72 44.4
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 5.8e-07 60.5 54 59.3
BraA10t43982Z Brassica rapa HOM05D000234 ORTHO05D001258 1.7e-06 58.9 47 66.0
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.9e-06 58.2 49 59.2


User provided reference genes

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