Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 7.1e-139 497.3 255 100.0
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 3.2e-131 471.9 256 94.1
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 1.0e-129 466.8 256 93.8
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 3.0e-129 465.3 256 93.4
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 3.9e-129 464.9 255 93.3
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 3.9e-129 464.9 255 93.3
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 6.7e-129 464.2 256 93.4
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 1.5e-128 463.0 256 93.8
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 4.8e-127 458.0 256 93.0
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 4.0e-126 454.9 255 92.2
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 1.3e-124 449.9 256 90.6
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 7.1e-123 444.1 255 90.2
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.5e-120 436.4 251 90.8
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 1.3e-116 423.3 240 91.7
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 1.3e-116 423.3 256 85.9
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 5.9e-109 397.9 257 79.8
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 7.7e-109 397.5 260 78.5
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 3.2e-107 392.1 256 79.3
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.2e-107 392.1 257 78.6
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.6e-106 388.7 255 78.0
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 6.1e-106 387.9 253 76.3
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 1.4e-105 386.7 253 76.3
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 1.8e-105 386.3 253 75.9
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 2.6e-104 382.5 253 75.9
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 3.7e-103 378.6 253 75.9
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 3.7e-103 378.6 255 76.1
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 6.3e-103 377.9 255 74.9
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 9.1e-102 374.0 254 76.0
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 2.0e-101 372.9 253 74.7
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.0e-101 372.9 257 73.5
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 7.7e-101 370.9 251 74.9
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 7.7e-101 370.9 251 74.9
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 5.0e-100 368.2 254 75.2
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 8.5e-100 367.5 255 75.7
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 1.1e-99 367.1 258 73.3
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.2e-99 365.5 253 73.9
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 9.4e-99 364.0 205 91.2
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 9.4e-99 364.0 254 72.8
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.2e-98 363.6 253 73.1
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 2.1e-98 362.8 257 73.9
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 2.7e-98 362.5 257 73.9
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 3.6e-98 362.1 253 73.5
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 1.0e-97 360.5 255 72.9
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 1.4e-97 360.1 255 72.5
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 1.8e-97 359.8 253 72.7
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 3.9e-97 358.6 252 74.6
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 3.9e-97 358.6 253 73.1
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 6.7e-97 357.8 253 72.7
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 8.8e-97 357.5 255 71.4
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 8.8e-97 357.5 254 71.3
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 7.4e-96 354.4 257 73.2
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 1.7e-95 353.2 256 71.9
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 2.2e-95 352.8 254 71.7
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 2.2e-95 352.8 257 72.8
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 8.2e-95 350.9 252 72.2
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.8e-94 349.7 252 70.6
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.8e-94 349.7 252 70.6
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 1.8e-94 349.7 252 69.4
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 3.1e-94 349.0 253 70.8
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 4.1e-94 348.6 258 70.2
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 4.1e-94 348.6 254 70.5
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 5.3e-94 348.2 253 70.0
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 7.0e-94 347.8 255 70.6
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 7.0e-94 347.8 251 71.3
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 9.1e-94 347.4 257 70.4
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 2.0e-93 346.3 255 69.8
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 3.5e-93 345.5 272 68.8
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 4.5e-93 345.1 255 69.4
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 7.7e-93 344.4 270 69.6
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.0e-92 344.0 257 72.0
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.7e-92 343.2 257 68.5
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.7e-92 343.2 255 67.8
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 2.2e-92 342.8 257 70.0
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 5.0e-92 341.7 257 69.6
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 5.0e-92 341.7 258 69.8
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 6.5e-92 341.3 265 67.9
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 8.5e-92 340.9 255 67.5
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 8.5e-92 340.9 255 67.5
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 1.1e-91 340.5 255 69.8
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 2.5e-91 339.3 254 67.7
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 2.1e-90 336.3 251 69.3
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 3.6e-90 335.5 303 61.4
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 6.1e-90 334.7 259 67.6
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 8.0e-90 334.3 257 68.1
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 1.4e-89 333.6 241 68.9
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 1.8e-89 333.2 254 66.5
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 3.0e-89 332.4 253 68.8
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 4.0e-89 332.0 240 70.4
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 2.6e-88 329.3 263 65.4
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.8e-87 325.9 280 62.5
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 8.3e-87 324.3 240 69.6
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 1.8e-86 323.2 259 63.7
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.1e-86 322.0 259 64.1
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 1.2e-85 320.5 256 67.6
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 2.9e-84 315.8 254 61.4
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 3.8e-84 315.5 223 72.2
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 3.2e-83 312.4 257 69.6
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 3.2e-83 312.4 239 67.4
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 9.4e-83 310.8 256 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 4.0e-81 305.4 255 61.2
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 6.3e-79 298.1 255 61.6
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 4.1e-78 295.4 256 59.8
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 1.9e-75 286.6 254 59.1
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.8e-74 282.7 167 80.8
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 8.0e-74 281.2 201 69.7
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 1.4e-73 280.4 255 58.0
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 2.3e-73 279.6 206 70.9
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 3.2e-70 269.2 164 78.7
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 5.4e-70 268.5 259 59.1
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 1.1e-67 260.8 237 59.9
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 3.1e-65 252.7 167 78.4
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 6.8e-65 251.5 243 54.7
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 1.2e-64 250.8 176 72.2
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 4.4e-64 248.8 185 68.1
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 1.7e-63 246.9 197 66.0
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 5.6e-59 231.9 219 55.3
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 7.3e-59 231.5 221 58.4
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 2.1e-58 229.9 222 55.4
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 3.6e-58 229.2 255 51.4
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 6.2e-50 201.8 115 83.5
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 7.3e-43 178.3 101 79.2
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 2.8e-42 176.4 142 66.9
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.2e-40 171.0 262 40.1
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 3.4e-40 169.5 142 66.9
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 1.2e-37 161.0 152 59.2
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 4.4e-32 142.5 68 98.5
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 3.6e-26 122.9 117 54.7
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.4e-25 120.2 93 64.5
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 1.3e-23 114.4 57 89.5
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 8.7e-20 101.7 72 65.3
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 2.0e-16 90.5 72 69.4
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 3.4e-16 89.7 78 62.8
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 2.9e-15 86.7 77 62.3
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 1.3e-12 77.8 71 60.6
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.3e-12 77.0 74 59.5
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-11 73.9 60 68.3
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 4.1e-09 66.2 69 50.7
MBI07_g43742_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.2e-06 56.6 116 40.5
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 4.2e-06 56.2 144 31.2


User provided reference genes

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