Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 1.6e-129 466.1 226 100.0
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.2e-113 413.3 224 87.5
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 2.9e-112 408.7 224 86.6
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 8.6e-112 407.1 224 86.6
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 2.1e-110 402.5 224 85.3
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.4e-109 399.8 224 84.4
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.8e-109 399.4 222 83.3
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.5e-108 396.4 222 82.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.6e-108 395.6 222 83.3
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 3.7e-107 391.7 222 82.4
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 6.4e-107 391.0 227 84.1
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.1e-106 390.2 222 82.4
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.9e-106 389.4 225 84.0
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.3e-104 383.3 222 81.5
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.3e-104 383.3 224 81.2
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 1.7e-99 366.3 222 78.4
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 5.1e-88 328.2 218 69.7
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.8e-86 322.4 225 70.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.2e-73 280.4 171 76.0
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.2e-73 280.4 171 76.0
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.6e-73 280.0 229 57.6
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.7e-73 279.3 222 57.7
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.3e-71 272.3 228 56.6
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 4.3e-71 271.9 228 56.6
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 5.6e-71 271.6 222 55.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 7.3e-71 271.2 220 57.3
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 9.6e-71 270.8 228 56.1
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.3e-70 270.4 228 55.7
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 2.1e-70 269.6 226 56.2
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.1e-70 269.6 225 56.9
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 2.8e-70 269.2 224 56.7
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 3.6e-70 268.9 228 57.5
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 6.2e-70 268.1 220 57.3
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 6.2e-70 268.1 227 56.4
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.1e-69 267.3 229 55.5
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.1e-69 267.3 226 56.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.8e-69 266.5 228 57.0
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.8e-69 266.5 229 55.0
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.8e-69 266.5 226 55.3
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 4.0e-69 265.4 228 56.1
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 5.3e-69 265.0 230 56.1
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 5.3e-69 265.0 226 54.4
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.2e-68 263.8 228 56.6
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 2.0e-68 263.1 228 55.7
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.4e-68 262.3 225 55.6
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 4.5e-68 261.9 215 55.8
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 4.5e-68 261.9 227 55.5
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 5.8e-68 261.5 225 56.9
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.6e-68 261.2 224 55.4
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.7e-67 260.0 228 56.1
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 2.2e-67 259.6 225 54.7
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 2.9e-67 259.2 225 54.7
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 3.8e-67 258.8 223 53.8
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 8.4e-67 257.7 227 55.1
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 3.2e-66 255.8 228 53.5
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.2e-66 255.8 224 54.5
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 4.2e-66 255.4 223 52.9
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 4.2e-66 255.4 230 53.5
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 5.5e-66 255.0 224 53.6
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 5.5e-66 255.0 200 57.0
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 1.2e-65 253.8 228 53.5
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.2e-65 253.8 201 57.7
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.2e-65 253.8 223 56.1
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.6e-65 253.4 228 53.1
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 2.7e-65 252.7 226 53.5
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.5e-65 252.3 228 53.1
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.9e-65 251.1 222 55.9
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 7.9e-65 251.1 228 53.5
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 7.9e-65 251.1 228 54.4
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.0e-64 250.8 225 52.9
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.3e-64 249.6 228 53.5
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 3.9e-64 248.8 215 51.2
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.1e-63 247.3 226 53.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.5e-63 246.9 227 52.4
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.5e-63 246.9 229 55.9
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.5e-63 246.1 226 52.2
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.5e-63 246.1 230 52.2
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.5e-63 246.1 226 51.3
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 7.4e-63 244.6 220 52.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 9.6e-63 244.2 222 50.9
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.8e-62 242.7 232 54.3
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.8e-62 242.7 230 53.5
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 3.7e-62 242.3 232 53.9
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 4.8e-62 241.9 222 51.4
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 8.1e-62 241.1 224 46.4
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-61 240.7 232 53.9
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.0e-61 238.8 232 53.4
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 6.9e-61 238.0 224 51.8
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 9.0e-61 237.7 228 54.4
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.0e-60 236.5 204 53.9
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.9e-59 232.6 225 51.6
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 2.9e-59 232.6 228 51.8
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.5e-58 229.6 227 51.1
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.5e-57 225.7 228 52.2
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.8e-56 223.4 226 49.6
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-54 217.2 182 57.7
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 9.0e-53 211.1 223 46.6
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.2e-49 200.7 224 43.8
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 2.7e-49 199.5 250 41.2
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.3e-48 196.4 219 48.4
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 6.7e-48 194.9 220 47.7
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.5e-47 193.7 219 48.9
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 5.9e-44 181.8 243 42.0
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.7e-43 180.3 242 42.1
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.7e-43 180.3 238 40.8
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 1.6e-41 173.7 226 39.4
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.6e-41 172.6 232 41.4
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.6e-41 172.2 253 37.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.6e-41 172.2 243 37.4
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.8e-40 170.2 229 38.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.0e-40 169.5 225 41.3
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 5.1e-40 168.7 150 55.3
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.1e-40 168.7 253 37.2
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-39 167.2 230 39.6
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.3e-39 166.0 229 38.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.3e-39 165.6 226 41.6
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.3e-38 164.1 227 37.4
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 4.8e-38 162.2 228 36.0
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 4.8e-38 162.2 146 50.0
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.1e-37 161.0 192 42.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.9e-37 158.3 194 42.3
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.2e-36 157.5 262 33.6
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 2.6e-36 156.4 237 35.9
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 5.9e-36 155.2 227 34.8
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.3e-35 154.1 264 34.5
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.5e-34 149.8 236 35.6
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.2e-34 149.4 264 34.1
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 7.9e-33 144.8 215 37.2
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 8.8e-32 141.4 262 32.1
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.0e-31 140.2 222 35.6
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.6e-31 139.8 257 33.1
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 4.4e-31 139.0 210 37.6
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 2.8e-30 136.3 150 45.3
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 6.3e-30 135.2 188 36.7
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 6.3e-30 135.2 151 43.7
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.1e-29 131.3 215 37.7
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 9.1e-29 131.3 226 32.7
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.2e-28 131.0 201 36.8
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.2e-28 131.0 140 44.3
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.6e-28 130.6 225 35.1
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.0e-28 130.2 150 42.7
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.0e-27 127.9 102 55.9
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.2e-27 126.7 225 34.7
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 3.8e-27 125.9 139 42.4
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 2.5e-26 123.2 255 31.4
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.5e-26 123.2 274 29.9
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 5.5e-26 122.1 143 43.4
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 7.2e-26 121.7 298 27.2
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.0e-25 118.2 272 29.0
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.6e-23 113.2 110 41.8
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 8.2e-22 108.2 152 38.8
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.1e-21 106.3 211 31.8
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 7.0e-21 105.1 143 37.1
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.7e-20 103.2 143 37.8
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 3.5e-20 102.8 190 36.3
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.0e-16 89.7 110 38.2
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.8e-16 88.2 218 30.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.2e-15 87.8 151 31.8
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.2e-14 83.6 77 45.5
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.0e-08 64.7 111 32.4
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.0e-08 64.7 96 34.4
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.2e-08 62.4 54 46.3
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.2e-07 61.2 200 28.5
Psat2g064720 Pisum sativum HOM05D001292 ORTHO05D001202 1.7e-06 57.4 264 24.2
EL10Ac1g01055 Beta vulgaris HOM05D001292 ORTHO05D001202 2.8e-06 56.6 219 26.0
Pp3c25_3200 Physcomitrium patens HOM05D001292 ORTHO05D001202 4.9e-06 55.8 198 25.8
unitig_8.g4849 Utricularia gibba HOM05D001292 ORTHO05D001202 6.3e-06 55.5 184 21.7


User provided reference genes

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