Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 6.3e-97 357.5 182 100.0
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 2.2e-86 322.4 182 90.1
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 8.5e-86 320.5 182 89.0
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 2.7e-84 315.5 179 90.5
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 8.0e-84 313.9 183 89.6
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 2.0e-82 309.3 182 89.6
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 1.7e-70 269.6 183 79.8
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 2.5e-69 265.8 180 78.9
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 2.5e-69 265.8 180 78.9
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 2.5e-69 265.8 187 78.1
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 3.2e-69 265.4 163 85.3
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 9.4e-69 263.8 163 84.7
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 1.0e-67 260.4 163 83.4
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 5.4e-64 248.1 163 81.0
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 5.6e-61 238.0 176 71.0
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 2.1e-60 236.1 177 69.5
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 3.6e-60 235.3 172 69.8
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.4e-59 233.4 176 69.3
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.4e-59 233.4 176 69.3
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 8.9e-59 230.7 168 69.6
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 8.9e-59 230.7 172 70.9
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 1.2e-58 230.3 177 68.9
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 1.3e-57 226.9 176 68.8
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 1.7e-57 226.5 176 67.6
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 6.4e-57 224.6 175 66.9
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 8.3e-57 224.2 173 67.6
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 1.1e-56 223.8 172 68.6
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 1.4e-56 223.4 165 69.7
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 1.8e-56 223.0 173 65.9
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.8e-56 223.0 171 70.2
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 2.4e-56 222.6 172 66.9
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 3.2e-56 222.2 173 65.9
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 3.2e-56 222.2 176 67.0
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 4.1e-56 221.9 172 68.0
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 4.1e-56 221.9 172 68.0
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 7.0e-56 221.1 177 63.8
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 9.2e-56 220.7 175 66.3
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 9.2e-56 220.7 176 65.9
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 9.2e-56 220.7 164 70.1
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 1.2e-55 220.3 173 64.7
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 2.0e-55 219.5 176 66.5
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 3.5e-55 218.8 176 64.2
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 3.5e-55 218.8 176 64.2
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 5.9e-55 218.0 176 64.8
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 7.8e-55 217.6 172 63.4
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 1.0e-54 217.2 147 74.8
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 1.3e-54 216.9 176 63.6
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 2.3e-54 216.1 176 64.2
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 3.9e-54 215.3 171 64.9
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 3.9e-54 215.3 176 63.6
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 5.0e-54 214.9 174 64.4
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 5.0e-54 214.9 176 63.1
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 8.6e-54 214.2 172 66.3
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.5e-53 213.4 174 63.2
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.5e-53 213.4 151 72.8
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 1.9e-53 213.0 172 62.8
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 1.9e-53 213.0 172 64.0
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.9e-53 213.0 172 67.4
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 2.5e-53 212.6 177 63.8
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 4.3e-53 211.8 179 60.9
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 4.3e-53 211.8 163 68.7
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 7.3e-53 211.1 172 65.7
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 2.1e-52 209.5 176 61.4
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 3.6e-52 208.8 172 64.5
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 6.2e-52 208.0 172 63.4
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 8.0e-52 207.6 172 64.0
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 8.0e-52 207.6 179 60.3
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 8.0e-52 207.6 179 60.3
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 1.0e-51 207.2 172 63.4
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.4e-51 206.8 130 77.7
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 1.4e-51 206.8 174 61.5
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 3.1e-51 205.7 164 65.2
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.2e-51 204.9 179 59.8
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 2.0e-50 203.0 172 64.0
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 5.8e-50 201.4 170 62.4
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 7.5e-50 201.1 174 61.5
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 9.8e-50 200.7 142 71.8
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 1.7e-49 199.9 176 60.8
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 2.9e-49 199.1 174 62.6
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 2.9e-49 199.1 164 62.8
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 3.7e-49 198.7 135 72.6
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 4.9e-49 198.4 137 75.9
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 4.9e-49 198.4 172 61.6
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 1.1e-48 197.2 201 57.7
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 1.4e-48 196.8 172 61.0
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 1.4e-48 196.8 174 61.5
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.9e-48 196.4 151 68.2
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 1.9e-48 196.4 151 68.2
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 1.9e-48 196.4 137 74.5
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.9e-48 196.4 135 71.9
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 2.4e-48 196.1 169 63.3
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 3.2e-48 195.7 171 63.2
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 4.1e-48 195.3 171 60.2
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.6e-47 193.4 176 58.5
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 2.0e-47 193.0 168 59.5
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 3.5e-47 192.2 132 75.0
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 3.9e-46 188.7 174 60.9
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 1.1e-45 187.2 117 81.2
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 3.3e-45 185.7 231 50.2
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 4.3e-45 185.3 128 71.9
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 7.3e-45 184.5 165 61.2
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 3.6e-44 182.2 117 75.2
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 3.1e-43 179.1 178 56.2
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 5.2e-43 178.3 163 60.7
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 3.4e-42 175.6 164 59.8
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 2.9e-41 172.6 153 59.5
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 8.3e-41 171.0 106 77.4
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 2.4e-40 169.5 176 58.0
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.1e-39 166.4 114 71.1
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 1.7e-38 163.3 136 64.0
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 5.6e-37 158.3 180 56.7
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 7.3e-37 157.9 123 65.9
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 9.5e-37 157.5 133 63.2
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 2.1e-36 156.4 162 56.8
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 2.6e-34 149.4 144 56.9
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 2.7e-31 139.4 184 45.7
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 4.6e-31 138.7 167 49.7
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.7e-30 136.7 176 48.9
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 3.3e-29 132.5 162 50.0
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 4.0e-27 125.6 176 46.6
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 5.4e-24 115.2 104 54.8
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 2.1e-23 113.2 99 57.6
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 2.7e-23 112.8 140 48.6
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 9.6e-21 104.4 122 50.0
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 4.0e-19 99.0 80 63.8
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.2e-18 97.4 85 60.0
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-17 93.6 138 42.8
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 2.4e-16 89.7 61 73.8
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 4.3e-13 79.0 81 53.1
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 2.8e-12 76.3 54 61.1
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 1.1e-08 64.3 126 37.3
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 7.1e-08 61.6 124 36.3


User provided reference genes

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