Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g20110 Schrenkiella parvula HOM05D001790 ORTHO05D371813 1.8e-70 269.2 145 100.0
AL8G17390 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.6e-18 96.7 118 52.5
Thhalv10029181m.g Eutrema salsugineum HOM05D001790 ORTHO05D003691 3.9e-17 92.0 117 47.0
AL1G50890 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.5e-16 90.1 124 46.8
Sp2g20690 Schrenkiella parvula HOM05D001790 ORTHO05D003691 1.5e-16 90.1 131 48.1
THA.LOC104818684 Tarenaya hassleriana HOM05D001790 ORTHO05D003691 1.9e-16 89.7 125 50.4
THA.LOC104821709 Tarenaya hassleriana HOM05D001790 ORTHO05D003691 1.9e-16 89.7 131 48.9
Carub.0001s3362 Capsella rubella HOM05D001790 ORTHO05D003691 7.4e-16 87.8 124 45.2
A02p38650 Brassica napus HOM05D001790 ORTHO05D003691 1.3e-15 87.0 136 44.1
BraA02t08841Z Brassica rapa HOM05D001790 ORTHO05D003691 1.3e-15 87.0 136 44.1
Aa31LG11G9230 Aethionema arabicum HOM05D001790 ORTHO05D003691 2.2e-15 86.3 125 46.4
BcaC03g17790 Brassica carinata HOM05D001790 ORTHO05D003691 3.7e-15 85.5 125 46.4
C02p58140 Brassica napus HOM05D001790 ORTHO05D003691 3.7e-15 85.5 125 46.4
BolC2t11882H Brassica oleracea HOM05D001790 ORTHO05D003691 3.7e-15 85.5 125 46.4
Thhalv10004203m.g Eutrema salsugineum HOM05D001790 ORTHO05D003691 4.8e-15 85.1 126 46.0
AL6G39530 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 4.1e-14 82.0 131 45.0
Carub.0006s2506 Capsella rubella HOM05D001790 ORTHO05D003691 5.3e-14 81.6 136 44.1
AT5G27470 Arabidopsis thaliana HOM05D001790 ORTHO05D003691 9.0e-14 80.9 131 43.5
CARHR289470 Cardamine hirsuta HOM05D001790 ORTHO05D003691 1.0e-12 77.4 125 44.8
Atru.chr8.1410 Acer truncatum HOM05D001790 ORTHO05D003691 1.3e-12 77.0 125 43.2
TWI56G0634 Tripterygium wilfordii HOM05D001790 ORTHO05D003691 3.8e-12 75.5 125 41.6
Hma1.2p1_0617F.1_g190250 Hydrangea macrophylla HOM05D001790 ORTHO05D003691 1.4e-11 73.6 128 38.3
Hma1.2p1_0928F.1_g237860 Hydrangea macrophylla HOM05D001790 ORTHO05D003691 1.9e-11 73.2 128 41.4
GSVIVG01000041001 Vitis vinifera HOM05D001790 ORTHO05D003691 7.2e-11 71.2 125 39.2
AL6G39540 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.6e-10 70.1 130 38.5
Ciclev10001143m.g Citrus clementina HOM05D001790 ORTHO05D003691 1.6e-10 70.1 128 39.8
Gohir.A01G179400 Gossypium hirsutum HOM05D001790 ORTHO05D003691 1.6e-10 70.1 125 38.4
TAR365G0532 Trochodendron aralioides HOM05D001790 ORTHO05D003691 1.6e-10 70.1 125 38.4
Gohir.D01G170200 Gossypium hirsutum HOM05D001790 ORTHO05D003691 2.1e-10 69.7 125 38.4
Gorai.002G211800 Gossypium raimondii HOM05D001790 ORTHO05D003691 2.1e-10 69.7 125 38.4
Sc06g0003380 Simmondsia chinensis HOM05D001790 ORTHO05D003691 2.1e-10 69.7 125 40.8
Eucgr.H04482 Eucalyptus grandis HOM05D001790 ORTHO05D003691 2.7e-10 69.3 128 40.6
Lsat_1_v5_gn_5_1480 Lactuca sativa HOM05D001790 ORTHO05D003691 2.7e-10 69.3 128 40.6
A09p05320 Brassica napus HOM05D001790 ORTHO05D003691 3.6e-10 68.9 161 36.6
PGR031G2902 Punica granatum HOM05D001790 ORTHO05D003691 3.6e-10 68.9 125 40.8
AUR62011866 Chenopodium quinoa HOM05D001790 ORTHO05D003691 4.6e-10 68.6 125 40.8
RcHm_v2.0_Chr2g0115881 Rosa chinensis HOM05D001790 ORTHO05D003691 4.6e-10 68.6 131 38.2
TAR362G0657 Trochodendron aralioides HOM05D001790 ORTHO05D003691 4.6e-10 68.6 176 33.5
Cc02_g33530 Coffea canephora HOM05D001790 ORTHO05D003691 6.1e-10 68.2 128 38.3
MELO3C026449.2 Cucumis melo HOM05D001790 ORTHO05D003691 6.1e-10 68.2 136 35.3
CsaV3_5G013970 Cucumis sativus L. HOM05D001790 ORTHO05D003691 6.1e-10 68.2 136 35.3
Lsat_1_v5_gn_4_42741 Lactuca sativa HOM05D001790 ORTHO05D003691 6.1e-10 68.2 128 39.1
AUR62024709 Chenopodium quinoa HOM05D001790 ORTHO05D003691 7.9e-10 67.8 125 40.8
Duzib132G0634 Durio zibethinus HOM05D001790 ORTHO05D003691 7.9e-10 67.8 125 39.2
Peaxi162Scf00037g00237 Petunia axillaris HOM05D001790 ORTHO05D003691 7.9e-10 67.8 128 39.1
Sc16g0008440 Simmondsia chinensis HOM05D001790 ORTHO05D003691 7.9e-10 67.8 125 40.8
BraA09t36170Z Brassica rapa HOM05D001790 ORTHO05D003691 1.0e-09 67.4 137 38.0
ECA234G0311 Erigeron canadensis HOM05D001790 ORTHO05D003691 1.0e-09 67.4 128 38.3
Manes.02G210900 Manihot esculenta HOM05D001790 ORTHO05D003691 1.0e-09 67.4 131 37.4
Psat6g149440 Pisum sativum HOM05D001790 ORTHO05D003691 1.0e-09 67.4 128 37.5
BcaNung04373 Brassica carinata HOM05D001790 ORTHO05D003691 1.4e-09 67.0 123 41.5
CSS0035783 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 1.4e-09 67.0 125 39.2
Cpa.g.sc26.176 Carica papaya HOM05D001790 ORTHO05D003691 1.4e-09 67.0 125 39.2
Ca_01500_v3 Cicer arietinum L. HOM05D001790 ORTHO05D003691 1.4e-09 67.0 128 37.5
Manes.10G109523 Manihot esculenta HOM05D001790 ORTHO05D003691 1.4e-09 67.0 125 39.2
RcHm_v2.0_Chr3g0454601 Rosa chinensis HOM05D001790 ORTHO05D003691 1.4e-09 67.0 128 39.1
Thecc.02G035000 Theobroma cacao HOM05D001790 ORTHO05D003691 1.4e-09 67.0 125 39.2
Lj5g0001404 Lotus japonicus HOM05D001790 ORTHO05D003691 1.8e-09 66.6 128 37.5
PGSC0003DMG400013480 Solanum tuberosum HOM05D001790 ORTHO05D003691 1.8e-09 66.6 172 30.8
Actinidia20058 Actinidia chinensis HOM05D001790 ORTHO05D003691 2.3e-09 66.2 128 39.1
C09p05790 Brassica napus HOM05D001790 ORTHO05D003691 2.3e-09 66.2 161 35.4
BolC9t53506H Brassica oleracea HOM05D001790 ORTHO05D003691 2.3e-09 66.2 161 35.4
FAN05G5279 Fragaria x ananassa HOM05D001790 ORTHO05D003691 2.3e-09 66.2 128 39.1
Glyma.20G233300 Glycine max HOM05D001790 ORTHO05D003691 2.3e-09 66.2 128 36.7
Gohir.D02G234200 Gossypium hirsutum HOM05D001790 ORTHO05D003691 2.3e-09 66.2 125 39.2
Gorai.005G262200 Gossypium raimondii HOM05D001790 ORTHO05D003691 2.3e-09 66.2 125 39.2
Nitab4.5_0005388g0030 Nicotiana tabacum HOM05D001790 ORTHO05D003691 2.3e-09 66.2 128 38.3
Nitab4.5_0008677g0040 Nicotiana tabacum HOM05D001790 ORTHO05D003691 2.3e-09 66.2 128 38.3
Rhsim01G0059500 Rhododendron simsii HOM05D001790 ORTHO05D003691 2.3e-09 66.2 123 39.0
HanXRQChr04g0099811 Helianthus annuus HOM05D001790 ORTHO05D003691 3.0e-09 65.9 176 33.5
Lj7A664T57 Lonicera japonica HOM05D001790 ORTHO05D003691 3.0e-09 65.9 128 38.3
CSS0029145 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 3.9e-09 65.5 125 39.2
FvH4_6g05710 Fragaria vesca HOM05D001790 ORTHO05D003691 3.9e-09 65.5 128 38.3
FAN14G1835 Fragaria x ananassa HOM05D001790 ORTHO05D003691 3.9e-09 65.5 128 38.3
Gohir.A03G212700 Gossypium hirsutum HOM05D001790 ORTHO05D003691 3.9e-09 65.5 125 39.2
Medtr1g082850 Medicago truncatula HOM05D001790 ORTHO05D003691 3.9e-09 65.5 128 37.5
Psat6g149680 Pisum sativum HOM05D001790 ORTHO05D003691 3.9e-09 65.5 129 37.2
QL02p001500 Quercus lobata HOM05D001790 ORTHO05D003691 3.9e-09 65.5 121 36.4
Hund21240 Selenicereus undatus HOM05D001790 ORTHO05D003691 3.9e-09 65.5 125 40.0
TPR.G14125 Trifolium pratense HOM05D001790 ORTHO05D003691 3.9e-09 65.5 125 36.8
Actinidia16513 Actinidia chinensis HOM05D001790 ORTHO05D003691 5.1e-09 65.1 125 38.4
Dinv40278 Davidia involucrata HOM05D001790 ORTHO05D003691 5.1e-09 65.1 125 38.4
FAN09G3771 Fragaria x ananassa HOM05D001790 ORTHO05D003691 5.1e-09 65.1 128 38.3
Glyma.10G155000 Glycine max HOM05D001790 ORTHO05D003691 5.1e-09 65.1 128 36.7
Lsat_1_v5_gn_2_87680 Lactuca sativa HOM05D001790 ORTHO05D003691 5.1e-09 65.1 128 39.1
BcaC04g23675 Brassica carinata HOM05D001790 ORTHO05D003691 6.7e-09 64.7 161 35.4
FAN02G4035 Fragaria x ananassa HOM05D001790 ORTHO05D003691 6.7e-09 64.7 128 38.3
MD04G1206400 Malus domestica HOM05D001790 ORTHO05D003691 6.7e-09 64.7 128 39.8
Cpa.g.sc48.197 Carica papaya HOM05D001790 ORTHO05D003691 8.8e-09 64.3 124 38.7
PSO832G0951 Papaver somniferum HOM05D001790 ORTHO05D003691 8.8e-09 64.3 128 37.5
Solyc01g098880.3 Solanum lycopersicum HOM05D001790 ORTHO05D003691 8.8e-09 64.3 176 33.0
vmacro12777 Vaccinium macrocarpon HOM05D001790 ORTHO05D003691 8.8e-09 64.3 142 35.9
arahy.Tifrunner.gnm1.ann1.DW9AST Arachis hypogaea HOM05D001790 ORTHO05D003691 1.1e-08 63.9 125 36.0
BcaNung02448 Brassica carinata HOM05D001790 ORTHO05D003691 1.1e-08 63.9 123 41.5
HanXRQChr07g0195751 Helianthus annuus HOM05D001790 ORTHO05D003691 1.1e-08 63.9 176 33.0
Sopen01g042420 Solanum pennellii HOM05D001790 ORTHO05D003691 1.1e-08 63.9 176 32.4
PGSC0003DMG402028588 Solanum tuberosum HOM05D001790 ORTHO05D003691 1.1e-08 63.9 176 32.4
Actinidia06601 Actinidia chinensis HOM05D001790 ORTHO05D003691 1.5e-08 63.5 128 38.3
MD12G1220200 Malus domestica HOM05D001790 ORTHO05D003691 1.5e-08 63.5 122 38.5
Prupe.6G327000 Prunus persica HOM05D001790 ORTHO05D003691 1.5e-08 63.5 122 39.3
Ca_10108_v3 Cicer arietinum L. HOM05D001790 ORTHO05D003691 2.0e-08 63.2 128 35.2
BolC7t44620H Brassica oleracea HOM05D001790 ORTHO05D003691 2.5e-08 62.8 122 41.0
CiPaw.07G016900 Carya illinoinensis HOM05D001790 ORTHO05D003691 2.5e-08 62.8 125 36.0
BraA06t26669Z Brassica rapa HOM05D001790 ORTHO05D003691 3.3e-08 62.4 123 41.5
Rhsim01G0058000 Rhododendron simsii HOM05D001790 ORTHO05D003691 3.3e-08 62.4 142 34.5
CiPaw.08G165400 Carya illinoinensis HOM05D001790 ORTHO05D003691 4.3e-08 62.0 125 34.4
ClCG03G016950 Citrullus lanatus HOM05D001790 ORTHO05D003691 4.3e-08 62.0 136 34.6
MBI04_g35660_MAGBIO Magnolia biondii HOM05D001790 ORTHO05D003691 5.7e-08 61.6 126 37.3
Sed0000871 Sechium edule HOM05D001790 ORTHO05D003691 5.7e-08 61.6 135 32.6
arahy.Tifrunner.gnm1.ann1.PXJ7J7 Arachis hypogaea HOM05D001790 ORTHO05D003691 7.4e-08 61.2 125 34.4
Sed0016587 Sechium edule HOM05D001790 ORTHO05D003691 7.4e-08 61.2 135 33.3
arahy.Tifrunner.gnm1.ann1.8W4KMR Arachis hypogaea HOM05D001790 ORTHO05D003691 9.7e-08 60.8 122 35.2
CDE10G0434 Ceratophyllum demersum HOM05D001790 ORTHO05D003691 9.7e-08 60.8 125 37.6
Phvul.007G180500 Phaseolus vulgaris HOM05D001790 ORTHO05D003691 9.7e-08 60.8 128 35.9
QL03p006890 Quercus lobata HOM05D001790 ORTHO05D003691 9.7e-08 60.8 125 34.4
VMungo0720G0527 Vigna mungo HOM05D001790 ORTHO05D003691 9.7e-08 60.8 128 35.9
arahy.Tifrunner.gnm1.ann1.29QZWB Arachis hypogaea HOM05D001790 ORTHO05D003691 1.3e-07 60.5 125 34.4
C07p40910 Brassica napus HOM05D001790 ORTHO05D003691 1.3e-07 60.5 122 40.2
CAN.G134.54 Capsicum annuum HOM05D001790 ORTHO05D003691 1.3e-07 60.5 128 34.4
Cfa006580 Carpinus fangiana HOM05D001790 ORTHO05D003691 1.7e-07 60.1 128 34.4
COL.COLO4_17835 Corchorus olitorius HOM05D001790 ORTHO05D003691 1.7e-07 60.1 128 37.5
Duzib248G1449 Durio zibethinus HOM05D001790 ORTHO05D003691 1.7e-07 60.1 125 36.8
Lalb_Chr18g0045581 Lupinus albus HOM05D001790 ORTHO05D003691 1.7e-07 60.1 131 32.8
Lsat_1_v5_gn_3_25760 Lactuca sativa HOM05D001790 ORTHO05D003691 2.2e-07 59.7 121 36.4
ATR0706G137 Amborella trichopoda HOM05D001790 ORTHO05D003691 2.8e-07 59.3 128 37.5
A06p37450 Brassica napus HOM05D001790 ORTHO05D003691 2.8e-07 59.3 122 40.2
Medtr7g029025 Medicago truncatula HOM05D001790 ORTHO05D003691 2.8e-07 59.3 167 31.1
Hund07063 Selenicereus undatus HOM05D001790 ORTHO05D003691 2.8e-07 59.3 109 41.3
PSO210G1133 Papaver somniferum HOM05D001790 ORTHO05D003691 4.8e-07 58.5 128 35.2
PSO210G6516 Papaver somniferum HOM05D001790 ORTHO05D003691 4.8e-07 58.5 128 35.2
Os03g0198400 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 1.1e-06 57.4 128 34.4
HPP92_015353 Vanilla planifolia HOM05D001790 ORTHO05D023066 1.1e-06 57.4 124 34.7
ECA246G3796 Erigeron canadensis HOM05D001790 ORTHO05D003691 3.1e-06 55.8 121 34.7
Os01g0559100 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 4.1e-06 55.5 108 38.9
Potri.005G094400 Populus trichocarpa HOM05D001790 ORTHO05D003691 5.3e-06 55.1 122 36.1
Migut.F00862 Erythranthe guttata HOM05D001790 ORTHO05D003691 6.9e-06 54.7 122 34.4


User provided reference genes

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